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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036390
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We have found 378 results. Now displaying 8 of 8 with 50 rows per page. This search has taken 7.588s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0112500.1
n.a. Cell division control 6; TAIR: AT1G07270.1 Cell division control, Cdc6; Swiss-Prot: sp|Q8W032|CDC6B_ARATH Cell division control protein 6 homolog B; TrEMBL-Plants: tr|I1KYU8|I1KYU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112500 LjG1.1_chr6 26840187 26846024 -
2 domain predictions
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LotjaGi6g1v0112500.2
n.a. Cell division control 6; TAIR: AT1G07270.1 Cell division control, Cdc6; Swiss-Prot: sp|Q8W032|CDC6B_ARATH Cell division control protein 6 homolog B; TrEMBL-Plants: tr|I1KYU8|I1KYU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112500 LjG1.1_chr6 26840648 26845910 -
2 domain predictions
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LotjaGi6g1v0133200.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072U1J0|A0A072U1J0_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi6g1v0133200 LjG1.1_chr6 38428562 38449952 +
2 domain predictions
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LotjaGi6g1v0133200.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072UH68|A0A072UH68_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi6g1v0133200 LjG1.1_chr6 38438439 38449612 +
2 domain predictions
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LotjaGi6g1v0166400.1
n.a. Vacuolar protein sorting-associated protein; TAIR: AT4G27040.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q5M759|VP221_ARATH Vacuolar protein sorting-associated protein 22 homolog 1; TrEMBL-Plants: tr|G7IXK4|G7IXK4_MEDTR Vacuolar protein sorting-associated protein; Found in the gene: LotjaGi6g1v0166400 LjG1.1_chr6 45059006 45065782 +
2 domain predictions
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LotjaGi6g1v0178100.1
n.a. Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4; TrEMBL-Plants: tr|A0A151SI68|A0A151SI68_CAJCA Heat stress transcription factor B-4; Found in the gene: LotjaGi6g1v0178100 LjG1.1_chr6 47011921 47013736 -
2 domain predictions
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LotjaGi6g1v0183600.1
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7IQ97|G7IQ97_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi6g1v0183600 LjG1.1_chr6 47662557 47666825 -
2 domain predictions
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LotjaGi6g1v0183700.1
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7IQ97|G7IQ97_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi6g1v0183700 LjG1.1_chr6 47675404 47679755 -
2 domain predictions
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LotjaGi6g1v0183700.2
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7IQ97|G7IQ97_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi6g1v0183700 LjG1.1_chr6 47675512 47679741 -
2 domain predictions
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LotjaGi6g1v0193000.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7K1I4|K7K1I4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0193000 LjG1.1_chr6 48913913 48919109 +
2 domain predictions
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LotjaGi6g1v0195900.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7K1I5|K7K1I5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0195900 LjG1.1_chr6 49217978 49229874 -
2 domain predictions
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LotjaGi6g1v0201000.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A151TGL3|A0A151TGL3_CAJCA TMV resistance protein N; Found in the gene: LotjaGi6g1v0201000 LjG1.1_chr6 49801962 49808486 +
2 domain predictions
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LotjaGi6g1v0248100.1
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1L117|I1L117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 LjG1.1_chr6 56018318 56027834 -
2 domain predictions
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LotjaGi6g1v0248100.2
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MGR4|I1MGR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 LjG1.1_chr6 56019684 56020186 -
2 domain predictions
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LotjaGi6g1v0248100.3
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|A0A0B2STE7|A0A0B2STE7_GLYSO Cullin-1; Found in the gene: LotjaGi6g1v0248100 LjG1.1_chr6 56019684 56022342 -
2 domain predictions
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LotjaGi6g1v0248100.4
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|A0A0R0G189|A0A0R0G189_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 LjG1.1_chr6 56019684 56027176 -
2 domain predictions
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LotjaGi6g1v0248100.5
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1L117|I1L117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 LjG1.1_chr6 56019684 56027176 -
2 domain predictions
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LotjaGi6g1v0248100.6
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1L117|I1L117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 LjG1.1_chr6 56019684 56027476 -
2 domain predictions
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LotjaGi6g1v0265800.1
n.a. Telomere repeat binding factor 1; TAIR: AT1G49950.1 telomere repeat binding factor 1; Swiss-Prot: sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1; TrEMBL-Plants: tr|A0A1J7HM45|A0A1J7HM45_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0265800 LjG1.1_chr6 57964594 57974026 -
2 domain predictions
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LotjaGi6g1v0287300.1
n.a. Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A151T6L6|A0A151T6L6_CAJCA Transcription initiation factor IIF subunit alpha; Found in the gene: LotjaGi6g1v0287300 LjG1.1_chr6 60478085 60484587 +
2 domain predictions
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LotjaGi6g1v0308500.4
n.a. La; TAIR: AT5G46250.1 RNA-binding protein; Swiss-Prot: sp|Q94A38|LRP6A_ARATH La-related protein 6A; TrEMBL-Plants: tr|A0A151R8A3|A0A151R8A3_CAJCA La-related protein 7; Found in the gene: LotjaGi6g1v0308500 LjG1.1_chr6 62577041 62582062 -
2 domain predictions
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LotjaGi6g1v0310200.1
n.a. Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A0S3S3A0|A0A0S3S3A0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0310200 LjG1.1_chr6 62898708 62907853 +
2 domain predictions
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LotjaGi6g1v0310200.2
n.a. Cullin; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 LjG1.1_chr6 62898940 62906163 +
2 domain predictions
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LotjaGi6g1v0310200.4
n.a. Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|V7BPK5|V7BPK5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0310200 LjG1.1_chr6 62898940 62906163 +
2 domain predictions
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LotjaGi6g1v0310200.5
n.a. Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 LjG1.1_chr6 62899330 62906163 +
2 domain predictions
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LotjaGi6g1v0310200.6
n.a. Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 LjG1.1_chr6 62899330 62906163 +
2 domain predictions
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LotjaGi6g1v0310200.7
n.a. Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 LjG1.1_chr6 62899386 62906163 +
2 domain predictions
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LotjaGi6g1v0318700.1
n.a. Heat shock transcription factor; TAIR: AT4G18880.1 heat shock transcription factor A4A; Swiss-Prot: sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a; TrEMBL-Plants: tr|I1M1P7|I1M1P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0318700 LjG1.1_chr6 63573549 63579436 +
2 domain predictions
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