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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0183909 |
| Transcript ID | Lj0g3v0183909.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: lon protease homolog 1, mitochondrial-like [Glycine max] gi|356533540|ref|XP_003535321.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 111 | 1071 | 961 | 70.039 | ||
| PANTHER | 174 | 813 | 640 | 0 | ||
| PANTHER | 174 | 813 | 640 | 0 | – | |
| SMART | 198 | 408 | 211 | 2.10E-48 | ||
| Pfam | 199 | 408 | 210 | 3.50E-33 | ||
| TIGRFAM | 201 | 1068 | 868 | 0 | ||
| SUPERFAMILY | 202 | 407 | 206 | 5.96E-14 | ||
| Coils | 396 | 425 | 30 | – | – | |
| SUPERFAMILY | 516 | 779 | 264 | 1.97E-45 | ||
| Gene3D | 526 | 698 | 173 | 1.70E-33 | ||
| CDD | 540 | 703 | 164 | 3.50E-14 | – | |
| SMART | 557 | 702 | 146 | 4.40E-11 | ||
| Pfam | 561 | 698 | 138 | 4.40E-21 | ||
| PRINTS | 565 | 584 | 20 | 1.10E-50 | – | |
| Gene3D | 701 | 772 | 72 | 2.40E-30 | – | |
| MobiDBLite | 778 | 857 | 80 | – | – | |
| PANTHER | 855 | 1071 | 217 | 0 | ||
| PANTHER | 855 | 1071 | 217 | 0 | – | |
| Gene3D | 857 | 878 | 22 | 2.40E-30 | – | |
| Pfam | 864 | 1068 | 205 | 5.50E-73 | ||
| Gene3D | 884 | 1069 | 186 | 5.70E-73 | ||
| SUPERFAMILY | 889 | 1068 | 180 | 1.97E-47 | ||
| PRINTS | 889 | 905 | 17 | 1.10E-50 | – | |
| PRINTS | 970 | 989 | 20 | 1.10E-50 | – | |
| ProSitePatterns | 973 | 981 | 9 | – | ||
| PRINTS | 1000 | 1019 | 20 | 1.10E-50 | – | |
| PRINTS | 1023 | 1041 | 19 | 1.10E-50 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP-dependent peptidase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds. | ||
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Biological process | Protein quality control for misfolded or incompletely synthesized proteins | The chemical reactions and pathways resulting in the breakdown of misfolded or attenuated proteins. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of Lj0g3v0183909.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0183909.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.