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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2585500 |
| Transcript ID | Lj2g3v2585500.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable dual-specificity RNA methyltransferase RlmN-like [Cicer arietinum] gi|502097051|ref|XP_004490899.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 2 | 10 | 9 | – | – | |
| PANTHER | 2 | 396 | 395 | 6.40E-270 | ||
| PANTHER | 2 | 396 | 395 | 6.40E-270 | – | |
| Phobius | 11 | 15 | 5 | – | – | |
| Phobius | 16 | 406 | 391 | – | – | |
| SFLD | 25 | 388 | 364 | 0 | – | |
| PIRSF | 29 | 396 | 368 | 1.90E-128 | ||
| SFLD | 37 | 386 | 350 | 0 | – | |
| Hamap | 38 | 383 | 346 | 62.585 | ||
| TIGRFAM | 40 | 380 | 341 | 4.20E-119 | ||
| SUPERFAMILY | 118 | 342 | 225 | 1.23E-17 | – | |
| SMART | 143 | 351 | 209 | 0.0064 | ||
| Gene3D | 146 | 363 | 218 | 7.60E-15 | ||
| Pfam | 148 | 309 | 162 | 5.50E-15 | ||
| CDD | 152 | 345 | 194 | 2.42E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. | ||
| Biological process | TRNA methylation | The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Biological process | RRNA base methylation | The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule. |
Expression pattern of Lj2g3v2585500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2585500.1, powered by CORGI.
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