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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0090900 |
| Transcript ID | LotjaGi1g1v0090900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dual-specificity RNA methyltransferase RlmN; TAIR: AT2G39670.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q8DG98|RLMN_THEEB Probable dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|G7KBR0|G7KBR0_MEDTR 23S rRNA m2A2503 methyltransferase; Found in the gene: LotjaGi1g1v0090900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13217820..13224334) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTCCCAAAAAAGAGGGTTTAATAAGACTAGGGGGTTTGGTTCCTCTTGATGATTTTTCATCTTCATTATCTCCTCT TGTGGAAGACACTGTAAGAGAAGAGCGATAATGCTGGCGTTGCTTCAGCACTGCTCTGCGCCTCTCGCACGTGCGTTCCG TCCGCCACCTCGCACACGTGCCATGGCCATCGCCGCCGCTTCCCCTCGCACCATCTCACAGCCTCAGGTTCTCCTTGGCT TATCTGAGCAGGACCTTCGACAGCTTGCCCTTGACTTGGGTCAGGTAAAGTTGTTCTCTTTTTCCAATTCACTTCACTTT TGCATCATTCAATTCCTCTAAAAACAACAACACAGAAAGATATTTGAATTTCTTTTTTTTGGAAATTTTCTTAGCAAGGT TTCAGGGGGAGGCAACTGTATCATCTTATATACAAGAGGAAGATTAGAGAAGTTCAGGAGTTTATTCAGTGTGGGTATTT TTTAATTTTTTTTTATAAATTTAATTTCCATTTTTTTTATTAATCTTTTTCTGTTGTTTTTGGTTGGGATTGTGGAGGTA GAGACATTAACATTGGATTGTGGTGTGGTCCTGTTATGGTTTGTTTGTATTGCAGTGCCTCAGGCATTTAGGAATGATCT CGAGGAAGCTGGATGGAAGGTGGGGCGGTCTCCTATTTTCAAGAGTGTCACTGCAGCTGATGGGACTGTTAAGGTAAAGG ATGCAGTCACAATTCGGCAGCTCTAATGTTGTTGTTCTTAATTTAGGATGCGTTTGGAGAAACTTATTTGAGCTTATCTT AATAGTTAATAGTATAAACGCTTATGCAAGTGTTGAGAAAGTTTATGGAAATAGTTTATTTTCATAAGCTGCTCTGATTA GCTTATGAATTAACGTTATATATACCTATAAGCTATTTTGAGCTTATTTCAATGAGCTTCTCAAATTAGCTTATAAGCGC TTATTGTCTCAAAATGGCTAATTGAGTTGTTTACCCAAATGCACCCTTATCGCATAGATGGTAGCTTTTAAGCTTTTTGG TTTTTTTTAAGATTTCTTGTTGTTTTAGTTACCATTTTATATTCAGAGATATCTACATGCAAACTTAATTTGATTGCATG GTCACTGTTCCAAATTATTTAGGCAATGTTTTGAGGTTTTTCTTTTCGTGTTTTACTTGGTATGTGCAGACAGTAGGATA TTAACTTGCATTTTGAAGAATGTGGTTGTTGATGTTTCCTTGATTTCTTGCATTTTTCTTGTTGGCGTTTGATTATGCAG TTGTTGTTAAAGTTGGAGGACAACAGGTTGATTGAAACTGTTGGTATTCCAGTTGATGATGATAAAGGTTCAGGTCGCCT CACAGCATGTGTCTCATCACAGGTGTTTCAATGACTCTTAAATCATCAAATAATGAGTTTATTTTCTCCTGTGCTGAAAT ATTTGTATAGTTGATATGCAAATTGGTTTCTGTAATGTTTAATATGAAAATATGTGCTGATGTTTTCCATTATTTGGTTA TGCCCATCTGTTGTTTGTATATTCAGGTTGGTTGCCCTTTGCGTTGCTCTTTTTGTGCCACTGGGAAAGGGGGCTTTTCA AGGAATCTTCAGAAACATGAAATCGTTGAGCAGGTTTGTGTCATACCTCATCCATGTCCATTCATTAGGCCTAGAGTACT TGAGATTAATTTAAAGAACTAAAAAGAGAAAATAAGAGAAACGAAAAAGATAGGATGTAGTAAAGATACTCATTCGTTTA GGGATTCCAAATGTTCTAAAGCAAGCTTGACTTTGTTTACCAATAAAACGGATAAAAAACACATCTTTTGTGAACAGGTC TTAGCGATTGAGGAGGTCTTCAAACGCAGGGTGACAAATGTGGTGTTTATGGGAATGGGAGAACCAATGTTAAACCTGAA GGCAGTACTTGGAGCACATCAGTGCTTAAATAAGGTGAATAAATGACTATCATTTTTTATGTTATTTCCTTATCAAATGC TTACTCTTCTTGTAATTGTCACAGAACTCTATGAGATTGAGAGGTCAAACCTTAATTTATTCACACTATGGAATTGACTT TCTAAAAAATAGATACCATCTTAGTAATTTTTAGATTCTCTCTCTATTGAGGATCAAATGTTTTTCATAATGTATTATCT TTTCTTGTAAAAGGAGCAAGAAATGTTTGTTTGGAAAATTTCCAGGCCTTGCTTTAATGTCATATGCAGATGCATGTGTA ATTTACCTTTGATAGGTATGTAAATTGTGCAAGTAAAGAACAGAGAAGATTAATACTGAAATGAGAATTATATTGATGAA GGTAAGGAGTAATACAGGAATAGAAAAAAGATAGATGGTGTATTGTTAGAGAAAACTCTAACAACCCAGAGAAGCTCTAA TGGCCCTCTTCCTAGAAAGATTCCTCTTTCTCTCTCCTATAACCGAATTTGATAATCATCAGTGTGTTCTCACCCCACAC CTCACTACTCTATATACTAACTTACTAACTAACTCCCTCCTCTCCATTTTGCCTGAGACACCTCAGCACCTTTCCCTTTC TTTCTTTCATAAACTTTCCACACCTTGGGCTTTCCTAAGCCCATTTCCCCTTTTGTGTTCGAGTCTCTATCAATTCCCTC CCCCTTAGAAACAGCCTTGTCCTCAAGGCAGAAGTCTGGAAATTGACCAACTAAGACCTCATTATCCTCCCAAGTGACAT CATCCACTGATCTGTTGGTCCACTTAATCAAACTTTGGTGAACCTCTCTGTCACCTTGCCTGATACTTCTGGTGCCCAGA ATCTCCTCAGGATAAAAGTCAGGAGTTTCCCCAATATCTAGATCAGTAGGCAGCTCTCCTTGGACTTGGTAATTGCCTAT AGCCTTTTTTAAAAGAGACACATGGAAGACAGGGTGTATTCTTGATTCTGCTGGCAGTTTGAGCTTGTAAGCAACAGCTC CAATTTTGTCTTCAATTTGAAAAGGGCCATAGAACCTTGCTGCTAACTTTTGATTGATTCTCTTGACAACAGAATGCTGC CTGTGGGGCCTGAGCTTGAGGAAGACCCATTCTCCTATGTCAAAGCTCAAATCCCTTCTCTTCTTATTAGCATAACTGAC CATCTGCTCCTGTGCTCGCTGTAAATGTGCCCTCAGTTGCTTCAAAGCCTCATCTCTCTCACTTAGTTCTAGAGCAACAG CTGCTACCTTGGTCTCATTAGTTAGAAACCTGATGATGGGGGGTGCTTTTCTGCCATAAACCACCTCAAAAGGAGTTTGG CCAATGGAGCAATGAAAGGTAGAATTATACCAAAACTCAGCCCAAGGAACCCAATAAGACCAAGTCCTCGGATGCTCAGA GGCAAAGCATCTCAAATAACTCTCTAAGCACCTGTTTATGACCTCTGTCTGGCCATCAGTCTCAGGGTGGTAGGAGGAGC TCATTTTCAACTTGGTACCCTGTAATTTTCAATAGATGTACGTAAATGCAATGAAATTAGGGGGCTTATCAAGTGAGAGG AGGGTACTATTGTGAGAGATGAGAGCATTAACTATAGATCGTTGGATCAAAATACACGGTCAGGATTTGTCCCATCTATT AAAGCTACACGTGACCCTTAATCCCCTTCTCTCTCCACCCACATCCAGAACTGGTTCCTATCGCAACACCGTCTTTGTTC CTCTGTAGAAAGAACAAAGCTTTTAGCAAAATTTATCACGATTGAATCAAAGTATAGGTGTTAAAACATAGGATGAGGAC AAACTGCCAGTCATTGTCCAACCCCAAAAAAGCCTAACTTTTCAATTTAGTTTCATGAACCAATACACCAATTAGGGCTG CACGTTCTGCATAAAACAAATGAATTTTTTTTTGGAACCTGAAAAGATGAATCAAACCTCTGAATGAATAGAGCATGAAT TGAGAAACAAATTCTCTCTCTTTTTTTTTTTTTGAATTGATTTTCCTCATTCTCGTCACCGGCAGTAGGATTTACTTGGC CCCCACCCACTACGGGAACCTTCTGAGCATCCTCTGGATTGGCACCAAACTTCCTCGTGGTGGTTCCCTTATCCAGGAGG ACGCCGCATGCAGCAGTGGAGTTCACTTCACCGATGGCCCTGGGTTGAGACTTGAGAGAGTGTGAGAGTGAGGAGAAGAT GATTCAGAGACGCAGAAATTAATGGAAAAACAGGGTCGATCACGTGACAGCGTTTTAATAAAAATCAAATCTGAACCATC TAATTTCATCAAACGGTTATAATTTAATGCTCTCACCTCTCACCATAAACCACTCCTCTCACCTGATATGCCCCCATGAA ATTATATGCATATGTATGCTTTCTCCGTTAAAAGTTCAAAACTCAAAGAGATCAGTTTAATTGATTTTAGTTTCTTGTAG GATGTGCAAATTGGGCAGAGAATGATGACCATCTCCACTGTGGGGGTTCCAAATACAATGAAGAAGCTGGCTACTCACAA ACTTCAATCGACTTTAGCTGTGAGGTAATCGCCCTTGGTGCAAATGGAACTTTGATTTATGATTAAGTGTCATCAATTTG ACATATGCTAAGTTAGATCTCTGATGGAAAAGTGGCATTTGTACGAGAGTATTAGACCTTCAGGCTGCCACAGTAACTGG AATCCTTTATACTCTGTTCTGGAGTCACTGTGTTCTGTGCTGCAGTTCATTACCTGTACTTGATAGGTTAGGTTTCGGGT TCATTAGGAGCTTTCAAATTTAGATTTCATTGTGTCCCTGGTGAAGAAATATCCAGTCCAGTGCATAAAGTTTTTTATTG TTGGATGTTGAACAATACAACTAGAAGACACTATCAGAAATAAGGGATGTTTTAGCGTGAAATTTGAACTTTCATCAGTC AAATCTTTGTTCCATTAACTTATAATCTTCTCCAGAACCTAAATGTTAAAGCAGGCTCTCAACTACATATACTGCTGGAA GTTACTTGTATACTTTCTATATTGAGCCAGTTAGTGATTTACATTGCTTTCTTTTTATCATTAATTTTTTGTCCTTTTTT AGAGTGCACTGAAAGTCTATTGCTTAACCGCTCTCTCCCCAGGCACTTCCAAAAGAAGGGAAAAAATGCAACTCCTTTGT AGCCTACTTTAGATTTGTTGCAAAATGTAGCATCAGTTTGTGGCTGTAGTTTAGCTTGAGATAGTTTTTTTGTGGATTCT TTCAAATTCATGCATATAATTCTCTTTCTACTTTTTTATTTTTCTTTCTCTTGCATCAGCCTACATGCTCCTAACCAGAA ACTCAGGGAGACAATTGTTCCAAGTGCGAAATCCTACCCATTGGAGGCACTCATGAAAGATTGCAGTGAATACTTCCGCG AAACAAATAGACGAGTTTCCTTTGAATATGCACTTTTAGGTCAGAAAATTCTCATCACATACTTGCTCCTCTTTGTGTAT AAAGGTTAATGAAATTCTTATAATGTATTTGGCACTTTCTTTGCATTATATTTGAGCAGCTGGAATCAATGACTCAGTGG ATCATGCAGTAGAACTAGCTAAACTACTTCGTGAATGGGGATCTGGTTATCATGTCAACCTGATACCTTTTAATCCAATA GAAGGCTCTGAGTATAAGCGTCCTTACAGGAAAGCAGTATGATAATCTTCTCATTTTTTCATTCATTTTAAACATGATTT ACTTCATGGTTTGAGTTATTCAATAATATTTAAATGTCTTATCCGAACTAGGTGAAAGCATTTTCTGATGCTTTAGAGTC CTCTAAAATTACTGTTAGCGTACGTCAAACCAGAGGACTGGATGCAAATGCAGCTTGTGGTCAGCTCCGGAACGAGTTCC AGAAAGCTCCTATGGCCACTGACTCTGACAATCTGGAATCCCAGCTACCAAATATGGAACTTGCAGCAACCGGATGACGC GCTGGCAATGTCGGTTACACGACTGTTTATGTGATCAACATTCTGCTTATATGCCATACAATAACAATTTTGCAGTGAAC AATTGGTGATTGGTGAGAGGTTTTATGAACCAAAGATGAACAAAGCCTCTCTTACCAATTAAGAAGTGATAGAGCATGCA GGCCCTGGATATAAGTTGTTGGATTCTTTGGCATCTGGGATGAACTTCATGAGAAACAAGCTACAGGATTAGGCATAAAC CTTAGGACTTGGGTATTCATCTTGTGTGTGTGGGGGAGAGATTTTCTCATGTATTTGACCCCTCTTGCATGATATATATT TATGTAGTAACTAGTGATTCTGTTTTGTAAAAATCTGACTCTTAAATCTTAGTTAAAACATTTTATAATAGTTGAAACGT AAGCTCATTGGTGTGAAAAGCAGTGTGCTAGTTTTACACAAACTTTTAAGTACAGGATTTTTTTCCCCATTTTTTGGCCT TCTACTTATCTTATTGTATTTTCTCTTATTTTTATTTTCCCCCATAATCACATATTCATGTAGTCTGTAAATCCAGTTTG TTAAAATTATTTGGAAAATGCTTATTGTTACGAAA
CDS sequence (LotjaGi1g1v0090900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGCGTTGCTTCAGCACTGCTCTGCGCCTCTCGCACGTGCGTTCCGTCCGCCACCTCGCACACGTGCCATGGCCAT CGCCGCCGCTTCCCCTCGCACCATCTCACAGCCTCAGGTTCTCCTTGGCTTATCTGAGCAGGACCTTCGACAGCTTGCCC TTGACTTGGGTCAGCAAGGTTTCAGGGGGAGGCAACTGTATCATCTTATATACAAGAGGAAGATTAGAGAAGTTCAGGAG TTTATTCAGTTGCCTCAGGCATTTAGGAATGATCTCGAGGAAGCTGGATGGAAGGTGGGGCGGTCTCCTATTTTCAAGAG TGTCACTGCAGCTGATGGGACTGTTAAGTTGTTGTTAAAGTTGGAGGACAACAGGTTGATTGAAACTGTTGGTATTCCAG TTGATGATGATAAAGGTTCAGGTCGCCTCACAGCATGTGTCTCATCACAGGTTGGTTGCCCTTTGCGTTGCTCTTTTTGT GCCACTGGGAAAGGGGGCTTTTCAAGGAATCTTCAGAAACATGAAATCGTTGAGCAGGTCTTAGCGATTGAGGAGGTCTT CAAACGCAGGGTGACAAATGTGGTGTTTATGGGAATGGGAGAACCAATGTTAAACCTGAAGGCAGTACTTGGAGCACATC AGTGCTTAAATAAGGATGTGCAAATTGGGCAGAGAATGATGACCATCTCCACTGTGGGGGTTCCAAATACAATGAAGAAG CTGGCTACTCACAAACTTCAATCGACTTTAGCTGTGAGCCTACATGCTCCTAACCAGAAACTCAGGGAGACAATTGTTCC AAGTGCGAAATCCTACCCATTGGAGGCACTCATGAAAGATTGCAGTGAATACTTCCGCGAAACAAATAGACGAGTTTCCT TTGAATATGCACTTTTAGCTGGAATCAATGACTCAGTGGATCATGCAGTAGAACTAGCTAAACTACTTCGTGAATGGGGA TCTGGTTATCATGTCAACCTGATACCTTTTAATCCAATAGAAGGCTCTGAGTATAAGCGTCCTTACAGGAAAGCAGTGAA AGCATTTTCTGATGCTTTAGAGTCCTCTAAAATTACTGTTAGCGTACGTCAAACCAGAGGACTGGATGCAAATGCAGCTT GTGGTCAGCTCCGGAACGAGTTCCAGAAAGCTCCTATGGCCACTGACTCTGACAATCTGGAATCCCAGCTACCAAATATG GAACTTGCAGCAACCGGATGA
Protein sequence (LotjaGi1g1v0090900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLALLQHCSAPLARAFRPPPRTRAMAIAAASPRTISQPQVLLGLSEQDLRQLALDLGQQGFRGRQLYHLIYKRKIREVQE FIQLPQAFRNDLEEAGWKVGRSPIFKSVTAADGTVKLLLKLEDNRLIETVGIPVDDDKGSGRLTACVSSQVGCPLRCSFC ATGKGGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQCLNKDVQIGQRMMTISTVGVPNTMKK LATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMKDCSEYFRETNRRVSFEYALLAGINDSVDHAVELAKLLREWG SGYHVNLIPFNPIEGSEYKRPYRKAVKAFSDALESSKITVSVRQTRGLDANAACGQLRNEFQKAPMATDSDNLESQLPNM ELAATG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 406 | 391 | - | – | |
| Gene3D | 27 | 96 | 70 | 1.7E-9 | – | |
| PANTHER | 28 | 397 | 370 | 1.1E-214 | ||
| PANTHER | 28 | 397 | 370 | 1.1E-214 | – | |
| PIRSF | 29 | 396 | 368 | 1.4E-128 | ||
| SFLD | 37 | 384 | 348 | 0.0 | ||
| SFLD | 37 | 384 | 348 | 0.0 | ||
| Hamap | 38 | 383 | 346 | 62.74 | ||
| TIGRFAM | 40 | 380 | 341 | 2.1E-119 | ||
| Gene3D | 102 | 367 | 266 | 2.2E-96 | ||
| SUPERFAMILY | 118 | 342 | 225 | 1.23E-17 | – | |
| SMART | 143 | 351 | 209 | 0.0064 | ||
| Pfam | 148 | 309 | 162 | 6.0E-15 | ||
| CDD | 152 | 345 | 194 | 2.40541E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. | ||
| Biological process | TRNA methylation | The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Biological process | RRNA base methylation | The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule. |
Expression pattern of LotjaGi1g1v0090900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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