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LotjaGi5g1v0293400.3

Overview

Field Value
Gene ID LotjaGi5g1v0293400
Transcript ID LotjaGi5g1v0293400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:61089537..61095152) extracted from Lotus japonicus Gifu genome v1.2.

CTGTTTAATCTTTCATTTGGTTTACCATGTTACCTTTTCATTGTGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAACT GCTTAAATATGGTCGTAAGGGAAAGCCTAAGTTTTGCCCATTTAGACTTTCCAGTGTAAGTTACATAAAATCCTTTTCAG GGAAGTGTATGTGGATTCTCTATATCGCTTGCTAATTATCATTGTGGTTGGACAGTACACAACTCATTATATTCTCAATT TCAATTAATCTGTGATAGATAGGTACTTCCACATGTTAGTTGATGTTATATGAATCACATAATAGGAAAGGACATTTGAA TTGTATTTTCTATACTTTTATCTGCTCTTTTATTACACGTTAACGCTATTTTTAGGTGTCTTGCTCAGGAGAAATGTACT GATTGAAACCATTAAAAAGACCTAGTTTTAAATGGTTTTGTTGAAAACTGGTTTATGACAATGTTAAAGTTATAGTGGTA CTAATGATATCAAATGCAATTGACGTAAGATTTCTGTGAGTAGACCTTACAGGGCACCATTCAATTCTTCTATAAGATTG ATGTCTGTCATACACTCCTACTGTTTATCTTTTTTGTTTCCATATCCTTAATTTCATTAGCTAGGAGTGATTATTAAGGC TCTGTTTGCGAATCAGTACTGTACAACGCCATGTTAATGGAAAAAATATTTGCTTTGACGTTTTTGATCTTGGAAATTTG AATCCTACTTTCTGAGACATATTAAATGGATGTTTTGCTTAAAACAAACATACTCTAAGTTGTGATCTCTAGCTAACTTA ATGTGTTGGTTGTAGATCCTGCTCCTAGTCTTTTAGTGCCCATTTTCTGTCTTTCCTTCTTTTGATGGTGCAGTCTATCC TTGTTTACTGCATTTGACAGTCATGTATTTCTAACTGTACTCATTATAATCTCCATAAACCACAGGATGAATTGTCTTTA ATCTGGATTTCAAGTAGTGGAGAAAAAAGTCTGAAGCTATCTTCGATCTCAAGAATTATTCCTGGACAAAGAACTGTGAG AATTCTACCCTATTACTTTATATCATTCTAACGCCTGAGAGTTCTTTGTGATTAGCTAAGTGATTTTTAAGAATTGTTCT ATAAATGTTTCTTCTCTGTTATTTGATTGTTTTTCTTATCTTCTGGCAGGCTGTTTTCCAACGATATCTGCGTCCTGAGA AGGACTATTTGTCCTTTTCACTTATTTATAACCACGGGAAGCGATCCCTTGATTTGGTTGGTGCTCAGCTCTGAAATTCC ATGGAAAACTACACCATCTTTTATTTCTATTTTCTGCATTTTCCATTCTAACGAATAATTTTTCTTGTTGTGTTTCAGAT TTGCAAGGATAAGGTTCAGGCAGAATTGTGGATTACTGGTCTCAAGGCACTGATTTCTTCTGGTCAAGGTGGGCGTTCCA AAATAGATGGATGGAGTGATGGAGGCCTATGTCTTGATGTAAAATTCCTACTTGTTGTCTTGTCTATGTAATTATTTCAT CATTTTCCTTGAAATAAATGTTTTGGTGAATCTCAACAGGGAGAACTTATTGATTTTCTGCTTCATCAGAAAACTAGTTA TTGTTTCCTTTGAGGGAAAAATAATCTTTATGTAATGGATTTGCATGACTTATCTTGAAAAACATTTATACTATAGTTTT TTGAAACAACAGTTTAGGAATAGTTGCTTTTGGCATTTGCCTATTTTAGTTTTTCTGTGCTGATTTCATTTGTAGGGAAA TTATGGACTGACTGTATTAGAATTTTTAAATGCATCTATTTCTTATGATGCCATTATTCTCTGTAATAGCTTGAATGATT AAATGCATGGAATCTTGCATATAACTTTGTCTGGCTCAAAAACTTTCAGGATAGTAAAGACTTGACATCGAGTAGTCCTA GTGAAAGTTCGGTTAGTGCTTCACATACACAGGACACCAGTTCTCCTGATATTTCTGTTAGTGTGCCGAATACTTCTCCA AAGTCATTTCAACCTGAGAATACCTTAAATATTGAGAGGTCACATGCACCATCAAACCCGTCAAATATGCAAGTGAAAGG ATCCAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGCCATGGGTCTGCACCAGATGATTACG ATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAGTGTTGTGAAAGTCGGTGCTGATAAAAATGGCAGT TATTTAAGCCCAAGGGCAGATATTCTCCTCCCCAAGCCATTGGAGTCCAATGTGGTTTTAGATGTACTTCAAATAGCATG CGGTGTTAAACATGCTGCTCTAGTTTCAAGGCAAGGTGAAATGTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGGC ATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCACTGGCTTCTACAACTGTTGACTTTGTTGCCTGTGGG GAGTTCCATACATGTGCTGTTACAATGGCTGGGGAACTCTTTACATGGGGTGATGGTACTCATAAAGCTGGACTTCTTGG TCATGGAACTGATGTTAGTCATTGGATACCAAAGAGAATTGCTGGTCCATTAGAGGGGCTTCAAGTTGCTTTAGTCACTT GTGGTCCATGGCACACAGCTTTGATAACTTCAACCGGGCAGCTCTTCACATTCGGTGATGGAACATTTGGTGTCCTAGGC CACGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTGTCTGGTTTGAGGACAATAGCTGTTGCATGTGG AGTGTGGCATACTGCAGCTGTAGTAGAAGTTATTGTGACACAATCCAGTGCAAGTGTATCGTCAGGTAAATTATTTACTT GGGGTGATGGGGATAAGAGTCGTCTTGGACATGGAGACAAGGAGGCCCGGCTTGAACCAACTTGTGTACCTTCACTAATT GATCACAATTTTTATAGAATTGCTTGCGGGCACAGTTTGACGGCAGGCCTGACCACGCCTGGACAAGTTTTTACAATGGG AAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTACCTTGTTTGGTTCAAGACAAGCTTGCTGGAG AACCCGTTGAAGAAATTGCATGCGGGGCTTATCATGTAGTTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGAAAG GGTGCAAATGGGAGATTAGGTCATGGAGACGTTGAAGATAGAAAAGCACCCACTTTGGTTGAAGCCTTGAAAGATAGACA TGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTTTCTGGTGCTGAGCAGTCTC AGTGCGCTGCTTGTAGACAGGCATTTGGATTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCAT TCATGCAGTTCAAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATACCGTGTTTGCGATTCTTGTCA TGCGAAGTTGAACAAGGTTATAGATTCTGGCAATAATAATAGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGG ACAGATTAGAAAAGTCTGATCTGAGATTGACTAAATCAGCAGTGCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGT AAGGCAGCCAAACAGGGGAAGAAGGCCGATACATTCTCTCTGGTTCGTGCCTCTCAAGCACCGTCTTTGCTACAGCTCAA AGATGTTGTCTTGTCTACTGCTGTTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACCATCTGGAGCAAGTTCCA GGTCTGTCGTGAGTTCCAGGTCTGTCTCCCCTTTCTCTAGAAGATCGAGCCCCCCTCGTTCAGCTACACCTATTCCAACA ACATCAGGACTTTCCTTCTCAAAAAATATTTCTGATAGTCTGAAGAAGACAAATGAACTATTGAATCAAGAAGTGCTAAA GTTACGCGCTCAGGTATGTTATGCTTCCTTCATTTGTCTTATTGGTTTGAGTTTGGCGAATAAACAATGTAAAACATGAG CAGTATCATGCCAGAAATGTTAATTTCTTGTCTTCGTGCTTATAATGTGATGTGCACTTATTACGGTATCAAGAGAGATC TAAGTTCTAATGTAAATCTTGTTAGGTTGAGACACTGAGACAGAGATGTGAACTGCAAGAATTAGAGGTTCAAAGGTCAG CAAAAAAGACTCAGGAAGCTATGTCACTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCA CTTACAGCACAGGTTAAATTTTTTGTTAATTTTACTGCTTCCTGAAGTGTGATGTTTATTTTCATGTGACACTTTTTCAT TTATGGCTTTATTGTGCTGGATCTTATTTTATTTTTTGTAGTTTTCATTCGAAGAAAATGAAAACCTAAATTAAACCATC TATCAAATTGGAACCTCTAATTGTAACAAAATACCAAGAGTTGGTTTTTGAGCAATGACTTTCGCTTTCACATATTATAT TAACACCTACACTCCACGCTGAATACTGTTTTCCGTTTTTTTAAGAAAAAAATTCCCTACAGTTCCATTCCTTTTCCCTT TCATTGTATTTTTGTTCTATACTTGTGCTTATTGGTCTGTCACATTGTTTCAGCTCAAAGATCTGGCTGAGAGGCTTCCT CCTGGTATTTATGATGCTGAAAACATCAGACCTGCTTACGTGCCGAATGGTCTGGAGCCAAACGGCATCCACCATCCAGA CTTAAATGGGGAGCACCACACCAGAGCAGAGTCAATCAGTGGCTCTAGTTTAGCTTCTGTAGGACTTGAATACTCTCTGA TGAGTAGAATCGAGGGGACTTTGCCTGGAAGCTATGGTCTTTACCAGCAAAACCGCGGGCCTGTGACCACCAACAGAACA GAAGATTACCCGGACGTCAAATTGCCTAATGGCAGTAGTGTGATTCAGGCAAGCAACAGTAGTGTGTCAGATACTGTTGA TGGTAGGGATTCTGGGAATTTCCAAGATGACGAGAGTGGTTCAAGATCAAGGAATGCTGTATCGCCTGCTGCTAGTAATC ATGTTGAGGCAGAATGGATTGAACAGTATGAGCCCGGCGTCTATATAACACTGGTTGCCCTGCGTGATGGAACTCGAGAT CTAAAGCGAGTGCGCTTCAGGTAATAGAAGAATTCTCCACAGTTCCAGGTTATGTTTATCTGGTTCAACTGGTATTTGTG GCTGCCAAATAAATTATTGGTTAATTGCCTTGTAAATAATTTTATTTCTTTCACTAACTCTGCATGTGGGTTGATTTTTT ACTCCTGAAACCCTATCCATGTTTTAACTAAGATATTGCTTAAATTATATTGCAATCATCATCTTGCATGTGTAACATGT TTGATAATTAATGTGTATGCAGCCGGAGAAGATTTGGCGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGCGAAAAG GTATACGAAAAGTACAATGTTCGAAGCACAGACAAGTCTACGGGCCAAGCATCACGCAGGGGAGAGGGTGCTGGTTCACC TGTTCTATAATCTTAG 

CDS sequence (LotjaGi5g1v0293400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGTGAAAGGATCCAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGCCATGGGTCTGC ACCAGATGATTACGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAGTGTTGTGAAAGTCGGTGCTG ATAAAAATGGCAGTTATTTAAGCCCAAGGGCAGATATTCTCCTCCCCAAGCCATTGGAGTCCAATGTGGTTTTAGATGTA CTTCAAATAGCATGCGGTGTTAAACATGCTGCTCTAGTTTCAAGGCAAGGTGAAATGTTTACATGGGGTGAAGAATCTGG AGGACGCCTTGGGCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCACTGGCTTCTACAACTGTTGACT TTGTTGCCTGTGGGGAGTTCCATACATGTGCTGTTACAATGGCTGGGGAACTCTTTACATGGGGTGATGGTACTCATAAA GCTGGACTTCTTGGTCATGGAACTGATGTTAGTCATTGGATACCAAAGAGAATTGCTGGTCCATTAGAGGGGCTTCAAGT TGCTTTAGTCACTTGTGGTCCATGGCACACAGCTTTGATAACTTCAACCGGGCAGCTCTTCACATTCGGTGATGGAACAT TTGGTGTCCTAGGCCACGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTGTCTGGTTTGAGGACAATA GCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTAGTAGAAGTTATTGTGACACAATCCAGTGCAAGTGTATCGTCAGG TAAATTATTTACTTGGGGTGATGGGGATAAGAGTCGTCTTGGACATGGAGACAAGGAGGCCCGGCTTGAACCAACTTGTG TACCTTCACTAATTGATCACAATTTTTATAGAATTGCTTGCGGGCACAGTTTGACGGCAGGCCTGACCACGCCTGGACAA GTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTACCTTGTTTGGTTCAAGA CAAGCTTGCTGGAGAACCCGTTGAAGAAATTGCATGCGGGGCTTATCATGTAGTTGTTTTAACATCCAAAAATGAAGTTT ATACTTGGGGAAAGGGTGCAAATGGGAGATTAGGTCATGGAGACGTTGAAGATAGAAAAGCACCCACTTTGGTTGAAGCC TTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTTTCTGG TGCTGAGCAGTCTCAGTGCGCTGCTTGTAGACAGGCATTTGGATTCACTAGAAAGAGGCACAACTGTTATAATTGTGGAC TTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATACCGTGTT TGCGATTCTTGTCATGCGAAGTTGAACAAGGTTATAGATTCTGGCAATAATAATAGGAGGAATGCTATGCCTCGTTTGTC AGGTGAAAACAAGGACAGATTAGAAAAGTCTGATCTGAGATTGACTAAATCAGCAGTGCCTTCTAATATGGATTTGATAA AGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCCGATACATTCTCTCTGGTTCGTGCCTCTCAAGCACCGTCT TTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTGTTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACCATC TGGAGCAAGTTCCAGGTCTGTCGTGAGTTCCAGGTCTGTCTCCCCTTTCTCTAGAAGATCGAGCCCCCCTCGTTCAGCTA CACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAATATTTCTGATAGTCTGAAGAAGACAAATGAACTATTGAAT CAAGAAGTGCTAAAGTTACGCGCTCAGGTTGAGACACTGAGACAGAGATGTGAACTGCAAGAATTAGAGGTTCAAAGGTC AGCAAAAAAGACTCAGGAAGCTATGTCACTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGT CACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCTGGTATTTATGATGCTGAAAACATCAGACCTGCTTAC GTGCCGAATGGTCTGGAGCCAAACGGCATCCACCATCCAGACTTAAATGGGGAGCACCACACCAGAGCAGAGTCAATCAG TGGCTCTAGTTTAGCTTCTGTAGGACTTGAATACTCTCTGATGAGTAGAATCGAGGGGACTTTGCCTGGAAGCTATGGTC TTTACCAGCAAAACCGCGGGCCTGTGACCACCAACAGAACAGAAGATTACCCGGACGTCAAATTGCCTAATGGCAGTAGT GTGATTCAGGCAAGCAACAGTAGTGTGTCAGATACTGTTGATGGTAGGGATTCTGGGAATTTCCAAGATGACGAGAGTGG TTCAAGATCAAGGAATGCTGTATCGCCTGCTGCTAGTAATCATGTTGAGGCAGAATGGATTGAACAGTATGAGCCCGGCG TCTATATAACACTGGTTGCCCTGCGTGATGGAACTCGAGATCTAAAGCGAGTGCGCTTCAGCCGGAGAAGATTTGGCGAG CACCAAGCAGAGACTTGGTGGTCAGAGAACCGCGAAAAGGTATACGAAAAGTACAATGTTCGAAGCACAGACAAGTCTAC GGGCCAAGCATCACGCAGGGGAGAGGGTGCTGGTTCACCTGTTCTATAA 

Protein sequence (LotjaGi5g1v0293400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICESVVKVGADKNGSYLSPRADILLPKPLESNVVLDV LQIACGVKHAALVSRQGEMFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGELFTWGDGTHK AGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTI AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKSRLGHGDKEARLEPTCVPSLIDHNFYRIACGHSLTAGLTTPGQ VFTMGSTVYGQLGNPQSDGKLPCLVQDKLAGEPVEEIACGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKAPTLVEA LKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCAACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRV CDSCHAKLNKVIDSGNNNRRNAMPRLSGENKDRLEKSDLRLTKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPS LLQLKDVVLSTAVDLKRTVPRPVLTPSGASSRSVVSSRSVSPFSRRSSPPRSATPIPTTSGLSFSKNISDSLKKTNELLN QEVLKLRAQVETLRQRCELQELEVQRSAKKTQEAMSLAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGIYDAENIRPAY VPNGLEPNGIHHPDLNGEHHTRAESISGSSLASVGLEYSLMSRIEGTLPGSYGLYQQNRGPVTTNRTEDYPDVKLPNGSS VIQASNSSVSDTVDGRDSGNFQDDESGSRSRNAVSPAASNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGE HQAETWWSENREKVYEKYNVRSTDKSTGQASRRGEGAGSPVL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 905 905 0.0
PANTHER 1 905 905 0.0
Gene3D 12 256 245 5.8E-55
SUPERFAMILY 35 424 390 4.84E-94
ProSiteProfiles 35 96 62 8.635
PRINTS 80 93 14 1.1E-14
ProSitePatterns 83 93 11 -
ProSiteProfiles 97 148 52 13.981
Pfam 97 145 49 2.7E-8
PRINTS 99 115 17 1.1E-14
Pfam 149 200 52 2.2E-8
PRINTS 149 165 17 1.1E-14
ProSiteProfiles 149 203 55 13.559
PRINTS 190 206 17 1.1E-14
ProSitePatterns 190 200 11 -
ProSiteProfiles 204 255 52 13.378
Pfam 204 252 49 1.4E-13
PRINTS 206 220 15 1.1E-14
ProSitePatterns 242 252 11 -
Gene3D 257 427 171 2.3E-46
Pfam 266 313 48 1.2E-10
ProSiteProfiles 267 318 52 13.499
PRINTS 308 326 19 1.1E-14
ProSiteProfiles 319 370 52 13.559
Pfam 319 367 49 3.6E-7
PRINTS 366 387 22 1.1E-14
ProSiteProfiles 371 422 52 15.006
Pfam 372 419 48 1.2E-13
SMART 421 490 70 4.2E-19
SUPERFAMILY 423 497 75 3.12E-18
Pfam 423 489 67 3.5E-13
ProSiteProfiles 427 489 63 11.557
Gene3D 428 500 73 4.1E-16
MobiDBLite 494 514 21 -
MobiDBLite 581 625 45 -
MobiDBLite 584 625 42 -
Coils 629 670 42 -
Pfam 680 715 36 1.3E-18
Coils 685 705 21 -
MobiDBLite 728 747 20 -
MobiDBLite 770 838 69 -
MobiDBLite 771 785 15 -
MobiDBLite 798 816 19 -
Pfam 843 898 56 1.5E-29
ProSiteProfiles 844 899 56 36.491
MobiDBLite 900 922 23 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0293400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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