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Lj1g3v0296910.1

Overview

Field Value
Gene ID Lj1g3v0296910
Transcript ID Lj1g3v0296910.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 29 29 – –
PANTHER
PTHR23115
67 480 414 0 –
PANTHER
PTHR23115:SF146
67 480 414 0 –
Hamap
MF_00118_B
73 481 409 58.814
IPR004541
Gene3D
G3DSA:3.40.50.300
73 291 219 6.10E-67
IPR027417
TIGRFAM
TIGR00485
74 481 408 5.90E-225
IPR004541
SUPERFAMILY
SSF52540
80 308 229 4.50E-58
IPR027417
Pfam
PF00009
82 283 202 5.10E-56 –
ProSiteProfiles
PS51722
82 286 205 56.942
IPR000795
CDD
cd01884
83 285 203 7.67E-117 –
TIGRFAM
TIGR00231
85 220 136 1.90E-15
IPR005225
PRINTS
PR00315
86 99 14 2.40E-24
IPR000795
ProSitePatterns
PS00301
123 138 16 –
IPR031157
PRINTS
PR00315
130 138 9 2.40E-24
IPR000795
PRINTS
PR00315
150 160 11 2.40E-24
IPR000795
PRINTS
PR00315
166 177 12 2.40E-24
IPR000795
PRINTS
PR00315
203 212 10 2.40E-24
IPR000795
SUPERFAMILY
SSF50447
287 383 97 1.90E-29
IPR009000
Gene3D
G3DSA:2.40.30.10
292 380 89 8.60E-36 –
CDD
cd03697
293 379 87 2.26E-49
IPR033720
Pfam
PF03144
307 375 69 3.50E-16
IPR004161
Pfam
PF03143
380 479 100 5.30E-35
IPR004160
SUPERFAMILY
SSF50465
380 480 101 1.30E-33
IPR009001
CDD
cd03707
382 476 95 1.71E-54 –
Gene3D
G3DSA:2.40.30.10
382 480 99 9.50E-42 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003746
Molecular function Translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
Subterm of
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006414
Biological process Translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
Subterm of
Part of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v0296910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0296910.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.