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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0730600 |
| Transcript ID | LotjaGi1g1v0730600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|V7CYM1|V7CYM1_PHAVU Elongation factor Tu; Found in the gene: LotjaGi1g1v0730600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130245048..130249589) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAGACAAACAAGGAGGAGAAAAAATTGGGCCGCACGGGTCAATGTTGGGCTTCCAATCTAAAACCCTCAATTTCCAA TCCAATCAACTCACTCTCTCTTCCCCTAAAACCCTCGTCTCTGCAATTTCAACTTTCTCTTCTTCTTCTTCTTCTTCTTC CTCCACTCTCTGCAATTTCAATCTAGGTCTTCACTCTTCACTTCAGAAATGGCCACAACGCTCGCTCTCAGAAACTCCTC TTCTACCTGTAGGAGACACCTCTCCTATCTCCCATTCTCCTCTCACATCCTCCACTCCTCTCTCTCCTCTTCCCCTCTCT TCAATGACACTCCCTCCTCGTTCTCATCACCTTCTTCCTCCAACCCGTGGTGGAGATCCATGGCCACTTTCACCCGAACG TAACCCTCTCTCTATAACTCTTCGATTTTCTGAATCGCCAGATTTTTTTTGTGATATTTTTTTTTTTGGTTACAGGAAGC CTCATGTTAATGTGGGAACTATTGGGCACGTTGATCACGGGAAGACAACGCTAACTGCCGCAATCACCAAGGTTTACTGC AATTTCAACTCAAAAAATGAACCAGATTTTGAGGCTTTAGGTTATTTTATTTGACATTATTTGTATTTGTACAGGTGCTT GCTGATGAAGGGAAAGCGAAAGCTATTGCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTACCAT TGCTACTGTGAGTACTTGTTTTGCGCTTTTTATTCATTTAATTTGGCATTTCAATGAATTGTGATTTTTTTGTTTTGTTT CTATGTATCGCTGCTTTGTTTGAGAAATGGACTATTTGTCTTGATGATTGGATTTTCAGGCACATGTTGAGTATGAGACT GTGAAACGGCATTATGCACATGTGGACTGCCCTGGACATGCTGATTATGTTAAGGTAAGCTGAAAATTTGGTCTCATTTC CCTAAAAATAGAAAGTTGCTTGTAATTTCTAATTATCTTGCAACAGCTGAGTGGTTAAGTTTAAGAAGTGACTATTGAAT TATTAGACCTAGGATTGTTGATGGGTTTAGGTGGTAGAATGAGATTAGGTTAATTTAACTGACAGTTCTCATTTTTGAAT GTACATTATTTATTTGTTGAATGTGGAATTCATCATTTTGGGTGCTTGAATATCTTCATCTTCTATTCACAAATGGGATG GAAAAAGCATAATATGTCTTCTGATTACCAAAATGCTTTATTTTAAAAAATGACAATGAAAAAAAATTACACGAAAAACT TGCCACTGTGTAGCTGTATTTCTCAGATAACTTCTATGTCTTCTGAAATTAGTGCATTTAGCATTCCAGCATGGCTTGAT GTACCTACAGGTTGTTTGTCTAATGGTTTCTTCACTGTAAATGACAAATTCTTCTTATTCATCTGCTACACTGTTGCATT GGTTATGTTTCTGCAACTGTGCTTGTTTAGTTATACACAATTACACATACCTAATAAATGTTTGTTTCACAGAATATGAT TACAGGAGCTGCCCAAATGGATGGTGGTATACTAGTTGTATCTGCACCTGATGGACCGATGCCTCAAACCAAGGAGCACA TTCTTCTTGCTCGCCAAGTAGGTATTTTATTAAGTTGGTTTGTAAGTAATTGAAGCATATGTTTAGGTCTCCAGTTGCTT CCTTGCTTCTAGGTTAATGAACTTGTTATCTTTAAATGAATTGTGCAGGTTGGTGTGCCATCTCTTGTGTGCTTCTTAAA TAAAGTTGATGCTGTCGATGATCCAGAATTGTTAGAACTTGTAGAAATGGAGCTCCGCGGTAGGGTGTTTCTCAAAGACT TCACCTTCCTTCCTAATTCATACTTTCTAAAAGAATGCATCTGCATTAGTTCCTGTAGTCCCCATCATGTTTAAAACTTC AAGGTGTATTTATGTTCATTATGTATTCGGCAGAGCTTCTGAGCTTCTACAAGTTTCCTGGGGATGAAATCCCTATCATT AGAGGTTCAGCGTTGTCCGCTTTACAGGGTACAAATGACGAGATTGGTAAAAAGGCTATTCTAAAATTAATGGATGCTGT AGATGAATACATTCCTGACCCTGTGCGCCAGCTCGACAGACCTTTTCTAATGCCAATTGAAGATGTATTCTCCATTCAGG TAAATGGGCATGGACTTCTTCTGTTTGTTTTTTTTTTTTTTGAAGAATGCCTACTCATTGAAGTGAAGATGAGTTTGTTA ATTTTTTAGTCATATGTTACAGAACCTTGCGTTGACACTGGCATTTATCTAGTTTCAATCACTTGATACTTTAAAAAAAC TAAAAAAGTGTTTCCTCTTTTTTTTTTCGCTTCTATTTTTTTTAACTTGTGTATAAAAAATTATGTTCTTCAATGCTGTT ATGAGTCCACAAAATCTGCATTGATTTCCTCTGGTTTATAGGAAAGAAACATCATAGTTAAAAGCAATGCTATCCAGAAT GACACTTTGGCTGCTTAATATTTGTAATTTGTGTTAAAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAACAAGGGGT AATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTCATGCAGGTATGCTAGTTCAGTCATTTTCTGGTTTTAGGCTGCC ACCTGATTCTCATCATTCCTGGGAATTAGTCTATTGTTCTGTTTCAGAAGTATCGATGAATTCTTTGCATTGTAATAATG GTTATTCCTGACACTGAGCTTTCCTTGGTAGGGTGGTCCTCTAAAAACAACAGTAACTGGAGTGGAGATGTTCAAGAAGA TTTTGGATCAAGGACAAGTAAGTTAGTATCTTCACCTATAAGGGCTATTCGTATAGTATTATGAACTAACGATTTCAAAA TCTTATGCTATTTGATTGAAGTATGTGAATGGTTTTTATATCCGACACATCCTCTCATCCAAGAGCTTGTTGGGTTTAAA GAGTGAACAATGTACAGATTCTTCTTGTATTGAAATTTAACTTTTTATTTTAGAAGAATGAGGTTGAAAAGGATCTAATG CTAGACCACTTGGTCATGGATACAATGCCATAAACTAATTATGTCTAAAGGTTAAGCTACTAGAGTAGAACATATGAATG GTTTTATGAGCCCGTTTGTATGTGGACCAAAGAGCACTTTTAAGAGCTTATTTAGTGTTTTTTATAGTAGATACTAGATA AGCTCCAATAAGCCTGTCTCCAAACAGCTTCATAATCTAACACTGCATATGCTAAACTAATGTGGATTTTTACATTTCTT AGGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGATATTCAACGTGGTCAGGTTAGTTGCAGTGAT GAAGCTTTTTCTTATTTTTTAGACCTTGTTGCAATTTGCGAGGGAACTGTATCTTATCTGTATTTGTTTCCATAAGAATT GTCGAGTTTAGATTCAAACTACGAGGGTTGAGAAACAACTTTCCTAACACTACGTTGTATTGAAAAGGTCATTGCTAAGC CTGGTTCTGTAAAAACATACAAGAAGTTTGAGGCAGAGATTTATGTGCTCACAAAGGACGAGGGAGGGCGACACACTGCT TTTTTCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCTGATATCACTGGATCAGTAGAGTTGCCTGAAAATGTTAA AATGGTTATGCCTGGAGACAACGTTACTGCCACATTTGATTTGATTTCACCAGTTCCACTTGAACCAGGTCAGTATGTCT CAATTTAATGAAAAAAATTGTTTCTACATGATTTTCAACCACCATTCATATGTCATCCATACACTGCAATGTTATCCTCA CCATATGCTGTATATTTTGTACACTTCATGCTGGAGTGTCAAAACTGGAAAGTTTAGTTTATGGCTTGCTATTGATTTTA CAGGACAACGATTTGCCTTGAGAGAGGGTGGGAGAACAGTTGGTGCCGGTGTGGTGTCAAAAGTAGTGAGCTAATATGCG CCTATTGTCATTCAACTTTTAATCTACACATTTGCAAAAACACAAACTGTGGTGATCAATTAATATATTCAGCGGTTGTT GAGTAAATTTTAGGAGAAGCTCATCTTCATTGTTCATTTTGTAGTTCATAATTTGTCAACATGCTCTTGATAGCTGCAGA CTGTTTCTGCTTTATGAAAAATAATGTTAATCATCTATATATGCTTAACCGTCAAGTCCTAGATGTTGGGTTTTTACAAA TCTTTCACACTTTTTTGTTTAATATTACCCTTTTGTTTTAAGCTCTATTGTTGTTTACTTCTTTTATATTGTTCTCAGAT ACTGATAAATTGAGACATGATTTTGTAACGTGTATTTATGAGATAATGGCTGATTGTCTCACTGTCCCATAGCATGAAAC TAGTCAGACTGAATTCTAGTGCGCACGTATGTATACCATCTATACTGTTAACCATTTTACTTGAATTGGTTATACTAAAA TGAATCGTGGTTGTGAATGTAATTGAGTTAAAATCAACTATATGAGATTTGTTCTCACTGGA
CDS sequence (LotjaGi1g1v0730600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACAACGCTCGCTCTCAGAAACTCCTCTTCTACCTGTAGGAGACACCTCTCCTATCTCCCATTCTCCTCTCACAT CCTCCACTCCTCTCTCTCCTCTTCCCCTCTCTTCAATGACACTCCCTCCTCGTTCTCATCACCTTCTTCCTCCAACCCGT GGTGGAGATCCATGGCCACTTTCACCCGAACGAAGCCTCATGTTAATGTGGGAACTATTGGGCACGTTGATCACGGGAAG ACAACGCTAACTGCCGCAATCACCAAGGTGCTTGCTGATGAAGGGAAAGCGAAAGCTATTGCCTTTGATGAAATTGACAA GGCCCCTGAAGAGAAGAAGAGAGGAATTACCATTGCTACTGCACATGTTGAGTATGAGACTGTGAAACGGCATTATGCAC ATGTGGACTGCCCTGGACATGCTGATTATGTTAAGAATATGATTACAGGAGCTGCCCAAATGGATGGTGGTATACTAGTT GTATCTGCACCTGATGGACCGATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGT GTGCTTCTTAAATAAAGTTGATGCTGTCGATGATCCAGAATTGTTAGAACTTGTAGAAATGGAGCTCCGCGAGCTTCTGA GCTTCTACAAGTTTCCTGGGGATGAAATCCCTATCATTAGAGGTTCAGCGTTGTCCGCTTTACAGGGTACAAATGACGAG ATTGGTAAAAAGGCTATTCTAAAATTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTGCGCCAGCTCGACAGACC TTTTCTAATGCCAATTGAAGATGTATTCTCCATTCAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAACAAGGGGTAA TCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTCATGCAGGGTGGTCCTCTAAAAACAACAGTAACTGGAGTGGAGATG TTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGATATTCA ACGTGGTCAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATACAAGAAGTTTGAGGCAGAGATTTATGTGCTCACAAAGG ACGAGGGAGGGCGACACACTGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCTGATATCACTGGATCA GTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAACGTTACTGCCACATTTGATTTGATTTCACCAGTTCC ACTTGAACCAGGACAACGATTTGCCTTGAGAGAGGGTGGGAGAACAGTTGGTGCCGGTGTGGTGTCAAAAGTAGTGAGCT AA
Protein sequence (LotjaGi1g1v0730600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTLALRNSSSTCRRHLSYLPFSSHILHSSLSSSPLFNDTPSSFSSPSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGK TTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILV VSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE IGKKAILKLMDAVDEYIPDPVRQLDRPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGDEVEVLGLMQGGPLKTTVTGVEM FKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGS VELPENVKMVMPGDNVTATFDLISPVPLEPGQRFALREGGRTVGAGVVSKVVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 43 | 453 | 411 | 2.5E-276 | – | |
| PANTHER | 43 | 453 | 411 | 2.5E-276 | – | |
| Hamap | 56 | 453 | 398 | 58.232 | ||
| Gene3D | 57 | 260 | 204 | 1.4E-67 | – | |
| TIGRFAM | 57 | 452 | 396 | 2.7E-221 | ||
| SUPERFAMILY | 63 | 283 | 221 | 1.05E-57 | ||
| Pfam | 65 | 258 | 194 | 3.0E-57 | ||
| ProSiteProfiles | 65 | 261 | 197 | 57.156 | ||
| CDD | 66 | 260 | 195 | 1.5167E-133 | ||
| TIGRFAM | 68 | 204 | 137 | 4.8E-14 | ||
| PRINTS | 69 | 82 | 14 | 1.2E-22 | ||
| ProSitePatterns | 106 | 121 | 16 | - | ||
| PRINTS | 113 | 121 | 9 | 1.2E-22 | ||
| PRINTS | 133 | 143 | 11 | 1.2E-22 | ||
| PRINTS | 149 | 160 | 12 | 1.2E-22 | ||
| PRINTS | 186 | 195 | 10 | 1.2E-22 | ||
| SUPERFAMILY | 262 | 358 | 97 | 5.5E-32 | ||
| Gene3D | 263 | 393 | 131 | 2.3E-52 | – | |
| CDD | 268 | 356 | 89 | 7.63539E-51 | ||
| Pfam | 282 | 352 | 71 | 6.0E-18 | ||
| Pfam | 357 | 451 | 95 | 2.7E-30 | ||
| CDD | 359 | 448 | 90 | 3.91812E-57 | – | |
| SUPERFAMILY | 362 | 452 | 91 | 6.33E-35 | ||
| Gene3D | 397 | 452 | 56 | 4.5E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi1g1v0730600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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