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Lj1g3v4408630.1

Overview

Field Value
Gene ID Lj1g3v4408630
Transcript ID Lj1g3v4408630.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi|356572160|ref|XP_003554238.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23115
48 451 404 0 –
PANTHER
PTHR23115:SF155
48 451 404 0 –
Hamap
MF_00118_B
56 453 398 57.9
IPR004541
TIGRFAM
TIGR00485
57 452 396 1.10E-219
IPR004541
Gene3D
G3DSA:3.40.50.300
61 268 208 8.10E-65
IPR027417
SUPERFAMILY
SSF52540
63 283 221 5.23E-57
IPR027417
ProSiteProfiles
PS51722
65 261 197 55.97
IPR000795
Pfam
PF00009
65 258 194 2.50E-56 –
CDD
cd01884
66 260 195 2.55E-134 –
TIGRFAM
TIGR00231
68 201 134 6.40E-14
IPR005225
PRINTS
PR00315
69 82 14 1.20E-22
IPR000795
ProSitePatterns
PS00301
106 121 16 –
IPR031157
PRINTS
PR00315
113 121 9 1.20E-22
IPR000795
PRINTS
PR00315
133 143 11 1.20E-22
IPR000795
PRINTS
PR00315
149 160 12 1.20E-22
IPR000795
PRINTS
PR00315
186 195 10 1.20E-22
IPR000795
SUPERFAMILY
SSF50447
262 358 97 5.50E-32
IPR009000
CDD
cd03697
268 356 89 1.12E-49
IPR033720
Gene3D
G3DSA:2.40.30.10
269 357 89 7.70E-38 –
Pfam
PF03144
282 352 71 6.80E-18
IPR004161
Pfam
PF03143
357 451 95 1.70E-30
IPR004160
CDD
cd03707
359 448 90 2.43E-56 –
Gene3D
G3DSA:2.40.30.10
360 451 92 3.50E-42 –
SUPERFAMILY
SSF50465
362 452 91 6.33E-35
IPR009001

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003746
Molecular function Translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
Subterm of
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006414
Biological process Translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
Subterm of
Part of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v4408630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4408630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.