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Lj2g3v1646590.1

Overview

Field Value
Gene ID Lj2g3v1646590
Transcript ID Lj2g3v1646590.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi|356540854|ref|XP_003538899.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 95 95 – –
PANTHER
PTHR10629:SF30
45 386 342 0 –
PANTHER
PTHR10629
45 386 342 0 –
CDD
cd04716
105 224 120 7.87E-57 –
SMART
SM00439
106 225 120 1.30E-18
IPR001025
ProSiteProfiles
PS51038
106 225 120 17.327
IPR001025
Pfam
PF01426
108 215 108 3.40E-10
IPR001025
Gene3D
G3DSA:3.40.50.150
267 324 58 3.90E-52
IPR029063
SUPERFAMILY
SSF53335
269 321 53 1.37E-44
IPR029063
ProSiteProfiles
PS51679
270 618 349 31.326
IPR001525
PRINTS
PR00105
271 287 17 9.00E-12
IPR001525
SUPERFAMILY
SSF54160
371 441 71 1.56E-15
IPR016197
Gene3D
G3DSA:2.40.50.40
379 439 61 3.90E-19 –
CDD
cd00024
382 440 59 5.30E-13 –
SMART
SM00298
383 442 60 2.80E-11
IPR000953
ProSiteProfiles
PS50013
384 440 57 14.983
IPR000953
Pfam
PF00385
384 439 56 7.80E-11
IPR023780
ProSitePatterns
PS00598
407 427 21 –
IPR023779
SUPERFAMILY
SSF53335
433 615 183 1.37E-44
IPR029063
Gene3D
G3DSA:3.40.50.150
440 617 178 3.90E-52
IPR029063
Pfam
PF00145
448 569 122 3.00E-17
IPR029063
PANTHER
PTHR10629
451 617 167 0 –
PANTHER
PTHR10629:SF30
451 617 167 0 –
PRINTS
PR00105
497 511 15 9.00E-12
IPR001525
PRINTS
PR00105
543 556 14 9.00E-12
IPR001525

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj2g3v1646590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1646590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.