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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0451120 |
| Transcript ID | Lj4g3v0451120.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: mutS2 protein-like isoform 1 [Glycine max] gi|356521349|ref|XP_003529319.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 34 | 901 | 868 | 5.70E-209 | ||
| SMART | 45 | 368 | 324 | 3.50E-04 | ||
| PANTHER | 74 | 372 | 299 | 4.30E-238 | – | |
| PANTHER | 74 | 372 | 299 | 4.30E-238 | ||
| SUPERFAMILY | 100 | 329 | 230 | 6.15E-11 | ||
| Coils | 197 | 217 | 21 | – | – | |
| Gene3D | 398 | 605 | 208 | 1.70E-54 | ||
| PANTHER | 401 | 691 | 291 | 4.30E-238 | – | |
| PANTHER | 401 | 691 | 291 | 4.30E-238 | ||
| SUPERFAMILY | 403 | 605 | 203 | 1.14E-34 | ||
| SMART | 417 | 602 | 186 | 3.40E-57 | ||
| Pfam | 421 | 604 | 184 | 1.80E-33 | ||
| ProSitePatterns | 499 | 515 | 17 | – | ||
| Coils | 617 | 637 | 21 | – | – | |
| Coils | 645 | 691 | 47 | – | – | |
| MobiDBLite | 786 | 820 | 35 | – | – | |
| SMART | 827 | 901 | 75 | 1.40E-11 | ||
| SUPERFAMILY | 828 | 900 | 73 | 5.10E-07 | ||
| ProSiteProfiles | 830 | 901 | 72 | 17.091 | ||
| Pfam | 830 | 897 | 68 | 1.80E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Mismatch repair | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | Mismatched DNA binding | Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. | ||
| Biological process | Negative regulation of DNA recombination | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination. |
Expression pattern of Lj4g3v0451120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0451120.1, powered by CORGI.
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