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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0356800 |
| Transcript ID | LotjaGi2g1v0356800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytosine-specific methyltransferase; TAIR: AT1G80740.1 chromomethylase 1; Swiss-Prot: sp|C0SQ89|CMT3_ORYSJ DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr|I1J8E3|I1J8E3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83309833..83316196) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAATTTTCGCTTTTTCCCGCCCGAGTGGCTCTTCAAAACCCCACTACCCTTCACCATTTCTCTCACTCCCTACATTT TCGCCTTTTGCCGCTTCTTCTCTTTCTCCGCCACCACCCATGGCCAAACGCAAGCGCCAGCCACCACCCATGGCCAAACG TAAGCGCCAGCCACCACCACCACCGGAGGAGAAACACGACACCGTTTCACTGCTTCCAACTGAACGTAAAACGGCCAAAC GCCCCTCCGATAACTCCGATGACGACGCCTTCTTCGTCGGAAAACCTATTCCGGCCGCCGAAGCCCGCGCTAAGTGGCCC CACCGTTACCCCAAGGTCTTCTTCTTCTCTTCAACCCTACTTCTATACAGATTTGTACCTATTTACTTTCGATTTTAACC CTATTTCTCTTGTTTTGTATCAGGTGGAAAAGAAGGGTTCAGCTCGAAACTCCAACGGGTGAGAAATTGAGTATCTCAGA TTCCTCTTTGTTTCTCGTTTTTTCCATTTGCATAGCTGAAAACTCGGTTAATGGTTATCTAATATCTCTGGATCTATGCG ATTGTTTAGGGCAAAGAGCGAAACTGAGAATCTCCAGGTGAAGTCTCACTACAGTCAAGCTAGGGTTGATGGGATACTCT ACGACCTTAACGATGACGCATATGTCAAGGTTTTCTCCTTTTCCTTCGCAATCTGAATCACCATGATATGATCTCCCTAG ATTTTTGTTATAGCAGAATCCTTTCACTATCACAACACTTCGATGTCGAAAAATTTCTGATAGGTTCACTATTTTAACAT GCATTGAGCTATTTTGAATGAACTTCTCAAACATTAAAGGAAAAAAATCTGAAAATTGCTTTTTCTTCGATCCGCATTTA ACCTGATAAAAGTTGAATCTCATGCATTTAACTTCTTTGTAATCTTATTTATTTGTTAGGGTTTCAGTTACAATAACCTA AATTTGCTTTTTATTCGATCCGGTTGTATGTCATAGATTTTGGTTGGAAATGCTTTTAACTACTACTAATGAAAATCAAA TCACAAAAGCTTTCCTTTATTGTTAGGAGACACCATTGTTGTCAAATAGCGGTTTTAGTGGCGCTATTGCGTAGCGCTCT GAGGGCTCACCACCATTCTATGGTATTTGCCGCTTTGAGTGTTTGAAGTAGCGGATTTTTGGCTTTTCGCTATTTTCCGC GATTAACAAAACTGAAAGTCACATACATATCTTGATTAAAAGCTCACATAATTTAGAAGTTAATCCAATCTGGGCCTTAC TTTGGGAAATATTTTTTTTTACTGTTTGTTGTGTTGATTTATTCTTCTACCACATGGAATTCAGGCTGAAGATGGTAATG CTGATTTTATTGCAAGAATCGTTGAGATGTTTGAAACGGTTGATGATAAGAAGTATTTCACGGCTCAATGGTTCTACAGA GCTGAAGACACGGTGCGATTACATTTTATCAACAGCTTTTGTTTTAATTATCCTGCATTTGTTATGGGCCATTCATTTGG TGTCTTGAATGCATGCAGGTCATCAAAGTCCACAGTGATCTGGTTGACAAGAAACGGGTATTTATATCTGATGTCAAAGA TGAAAACCCGCTTGATTGTCTTGTATCCAAATTGAAAATCGCTAAAATCACTTCCACGGTACGTGCTTCATGGTCACTTA GTTTTCTGTAATATCTAATTACATGGCACTTTAATAATTACATGGTCACTTTTTGCAATTTGAATACTGCAGATGGGCTT GGCTGCCAGGAAGGAGATAATCCCTTCTTGTGATTTCTATTATGACATGAAGTACACAGTGCCATACTTGACCTTTTCAA ACCTCGTGAGCGGTATGGATTTTTATTCAGATAGGATTTGTATAAAATAACCACACAACACGACTCATGGTCATTGTTAT TTGTACTTTACATTTCTATCAAAGATATACCGATTTTTATATGACTTATGAATCATGACTACTGCTGTTTTAATGTTAGT TTTTGCTGAATTTTGCAACCTGACTCTTTTTCCTCTGATAACCAGAAACAACCAGAATAGAAAATGATTCATCTTCCACA GTTTCAACTGAGTCAGGATCTAATGCTTGTGTCAATGATGCTGACTATGTTAATGGAGGGACCTGTCAAAATAACAGTTC CATTTCGTCAGAGTGGACATTGTTAGACTTGTATTCTGGATGTGGAGCTATGTCCACTGGTATTTGCTTGGGTGCATCTT TATCTGGCATCAAACTTGTCACAGTATGTAGATTTTAGACTAATATTTATCAAGCGATTTGGTTTGTTTTTGCTTTTGTT TTGAGCAATAATTTTGACGGGCTTTATAATGCTTTTGTGTTTGACTTCAAAGAGGTGGGCTGTTGATACAAACGAACACG CATGTAAAAGTCTGAAGTTAAATCACCCAGAAACTCTGGTATGGTTCATTTGGCATCGTGTGTTAGAAACTTGCCATTGT ATCTTCATTCTTGTACTTATATTGCTTCTCAAAATGATAATCAGGTCAGGAATGAACTGGCAGAAGATTTTTTGAATCTA CTGAAAGCTTGGGCTAAGCTTTGTGAGGAGTTTTCACTTTTAGGAACTGAAAGGCCAGATGCTGACCTAGATGTGGATGA GGATGATGCTGATGATAAAGTTGATGATATGACTATTGAAGCTTCAGAAGTTCTATCTGATTCAGAGGAATTTGAGGTGG AAAGGTTGTTGGCGGTTTGCTATGGTGACCCAAACGAAGTCAAAAAACCAGGACTATACTTTAAAGTAAGTTAGCTTCCA CTCCTGCATGATAAATTAATTGGCTTATTTGAAGTTGCAACTTTTATTTTTGCACAGCTCAATTTTAAATTTACCCTACA CTTCTCATCATTTCATTGATCATATCCCACCTTTTTTAATTCCTATCTCTCTTTGCTCCACTCTTGGAGGTTTTTTTGTT GTTGTTGTTGTTCAGGTTATTATTAAGATTGGCTTAATATTGTGAGTGTTCTTTGCGCTTTCTGTGTAACACATTTGGAT TTTAAACACAGTTCAGCATATATATATATATATATATATATATTTGCTAGTGAGTGGAATAGAATGGAAATAAATTAAAG TTTCCATTTCATATTTTGGATGTCTTCATGATATAACATTAAAAGTCTGATTTGAAATCCTAAATTTGAGGGAAAGAAAA GAATGTTATTGCTCTCCAACTTTTCATTTTATCTTGTGCTTTCAAACTTAAATGATCAATTATTTTGATGTTATAATCAT TTAGGTGCGTTGGAAGGGTTATGGTTCCAGTGAGGATACATGGGAGCCAAGAGAAGGCTTGAGGTTATCATCTTACAATC ATGTTATTAAAATATTGATTATTATTTCCATCTGTTTCCAAAGGCTTATGCCTTATAGCGAAATCTCTGCAAGATTATAA CTGTGGTTATGTATGTTCCAGCGATTGCGAGGAAGTTTTGGAAGAATTTGTGAAGAAAGGATATAAGAGAAAGTTATTGC CCCTTCCGGTGAGTCTCTCTCTTTTCCTCATTTGTGGATAAACTTAATTCTTCGTTTCGAGGCAAGCTTATTTCCTTTTT ATTAATTTTTTTGTAATAATTTGTTCTTGTGCAGGGTGACGCTGATTTGATATGTGGAGGACCACCATGTCAAGGAGTAA GCGGTTTCAACCGCTTCAGGAACCCTCGGGCTCCATTAGAGGATACTAAGAACAGTCAGCTAATTGTGTACATGGACATC ATTGATTTCTTGAAGCCAAAATACGTCCTAATGGAGAACGTAGTAGATATTTTGAAGTTTGCTGGTGGTTTCTTAGGGCG TTATGCTATTGGCCGTCTTGTTGCCATGAACTACCAAGCTAGAATGGGTATGATGGCAGCAGGGTCTTATGGCCTTCCGC AATTTCGGATGCGTGTTTTCTTATGGGGAGCTCGTCCTTCCCAAGTAAGACCACAATTTATACTTCTAGATTTTTTTAGG TGAAATGATTATGTTGATGTTATAAATGGGAAGGTTAATGATTTGACAATTTTTTTGGCAGAAATTGCCTCCATATCCGT TACCAACTCATGAGGTGGTATCAAGAGGTTTCGTACCCGCAGAGTTTGAGGTAAGGACTGATAGAATCAGACATGTTCCT AGCATTTCCTTATAAAATAATTGTCTTCTGTGTTTTTAATCAATGGGGTCTGACAGTCAATCATAATGCAGGAAATTACA GTTGCATTTAATAAAAAAGAAACTTGTGAGCTGGCTAACGCACTTCTTCTTGAGGATGCAATATCAGATCTCCCTCCAGT ATGTTTATTTTGCTCACAAGTACATTGTTTAGTATGGTAGTTTGGACCTATATGAATTTTTGGTGGTATTTCTTTCCAAT TTTTATCTTCCTGCCAAACAGGTTGCAAATGATGAGAGCCGGGATGAAAGGAACTATGGAACCTCTCCTCGCACTGAGTT TCAAAAATATATTAGATTGAGCAAAAGCGGTTTGCTTCCATATCTACTGTTTTAATTTTGAAGCATGCTATCTTGTTTAT GAGCTTTGCTTTTACAGTTTTAACTTTACCTGATTGAAAATAAGTACTGCTTATAAGACTGTTGGGAATTTTGTACTACT TTGGATAGTTTTGGCCAGAACCATAATTGTGTTGTGGTGGTCGCTGTAGTTTGATGGGATAAGAAAATTGTCATGTCACC ATGATTATTAAAACATTGATATTTGCTGATTATACGTTCTCTGTTTTCTAGAGATTGTGAATAATATGGCTGCTGCTAAA AGCAAACCACAAAGAAAACTGTATGATCATCGTCCTCTGAAATTAAACAAAGACGATTATGACAGAGTTTGTCAGGTTCC CCAGAAGAAGGTTCTGTAACTTGACCTTTTCTGCTGTGTTTTTTATTTAATCCTAAGTGCAAGTTTAAATGGTGCCTGCT TGCTTTTCAGGGTGCAAACTTCAGAGACCTACGTGGAGTACTTGTGAAGGACAACAAAGCTGTATGGGATCCATCAATTC CAAGAGTCTTGCTAGATTCTGGGAAGCCTTTGGTACTATTCTTTTTTAGTCACCTTATTTTATGGACATATATTTTGAAC TACTCTTTATAATACCAAAACATTTTCCTCTGTTTGATATCTGTATTCTGTTCATGCATAGGTTCCTTCTTATGCTATGT CATTTGTTCGTGGGACCTCCACTAAGTAAGTATATGAATAATATCTGATTTTTTGGTGCCCTCTTCTCTTTCAAATTTCC TAATTTGCTTTCTGTAAAATGAAAAACAGGCCATTTGGACGTTTATGGTGGGATGAAATTGTGCCAACAGTTGTGACAAG GGCTGAACCACACAACCAGGTTATTATTTGGGTTTTATACTTTATTTGGTAACTGCTACCAATTCTGAACAAAATCGGTA CAAATATGTTGCATTGATGTAAATGGTATCTTCCCAAGGCTTTCATGCGGGCCTTTTAAAAGTTTAACTCATGTTGTAAT GTCAAATGCTGTCTCTTGGTCATGATATTTTGCATGTATCATTCTGCATTTTCTCATTTGAGCTATTTTATTGTTAGGCC ATTCTCCACCCCACACAAGATCGTGTACTTACAATTCGAGAGAATGCGAGACTGCAAGGGTTTCCTGATTGCTATAAACT TAGTGGACCGGTGAAGCAAAGGTATGTTCGTAATTGTATGTCTAGAAGGATTCAGAATCATTTCTTTATATAACTAGTTT TTACTTTTTAACCTTAGCTTAGTTTAGTTCAGCAGTTAAAATTTAATCATCACTGTCTTGGCACTCAATGTTACAACATA CAGGTACATGCAAGTTGGAAATGCAGTTGCGGTTCCTGTGGCTCTCGCCTTGGGATACACGTTTGGCTTGGCCTGCCAAG GGCTGTGTGATGATGAGCCTTTGACAACTCTCCCCTTTAGATATCCAGTTTGTCTTGCCTCATCTTCAGCTCAAATTGAG AATGAGGATTCTAGTTGAGGTCTCTTCGATATTGATTGCTGGTTAAAGTTTTCCATTTTTATTCGGAGCTTCATATAAGA AGAGTGTTGGACTGTTGGAGGCGGAAGAATAATATGCATTATTGTAATGAGCTTTTGGAACATTAATTATAATGATTGAA TTTTCAGCATGATTGTTATGTACACGGTACACTTATGACAGACATCGATTATTATGCTATAAGATCACTTTGGTGATGGT CTACTCTATGTCTATTTAGAAACAATTTATATATGATCAATGCTTGCTTTAACAATTGGAATTGTGTTTATTTGTTGATG ATTGACCGAGGCTATGTCATATGTTGCCCTGAAAGGTGAAGGTG
CDS sequence (LotjaGi2g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAACGCAAGCGCCAGCCACCACCCATGGCCAAACGTAAGCGCCAGCCACCACCACCACCGGAGGAGAAACACGA CACCGTTTCACTGCTTCCAACTGAACGTAAAACGGCCAAACGCCCCTCCGATAACTCCGATGACGACGCCTTCTTCGTCG GAAAACCTATTCCGGCCGCCGAAGCCCGCGCTAAGTGGCCCCACCGTTACCCCAAGGTGGAAAAGAAGGGTTCAGCTCGA AACTCCAACGGGGCAAAGAGCGAAACTGAGAATCTCCAGGTGAAGTCTCACTACAGTCAAGCTAGGGTTGATGGGATACT CTACGACCTTAACGATGACGCATATGTCAAGGCTGAAGATGGTAATGCTGATTTTATTGCAAGAATCGTTGAGATGTTTG AAACGGTTGATGATAAGAAGTATTTCACGGCTCAATGGTTCTACAGAGCTGAAGACACGGTCATCAAAGTCCACAGTGAT CTGGTTGACAAGAAACGGGTATTTATATCTGATGTCAAAGATGAAAACCCGCTTGATTGTCTTGTATCCAAATTGAAAAT CGCTAAAATCACTTCCACGATGGGCTTGGCTGCCAGGAAGGAGATAATCCCTTCTTGTGATTTCTATTATGACATGAAGT ACACAGTGCCATACTTGACCTTTTCAAACCTCGTGAGCGAAACAACCAGAATAGAAAATGATTCATCTTCCACAGTTTCA ACTGAGTCAGGATCTAATGCTTGTGTCAATGATGCTGACTATGTTAATGGAGGGACCTGTCAAAATAACAGTTCCATTTC GTCAGAGTGGACATTGTTAGACTTGTATTCTGGATGTGGAGCTATGTCCACTGGTATTTGCTTGGGTGCATCTTTATCTG GCATCAAACTTGTCACAAGGTGGGCTGTTGATACAAACGAACACGCATGTAAAAGTCTGAAGTTAAATCACCCAGAAACT CTGGTCAGGAATGAACTGGCAGAAGATTTTTTGAATCTACTGAAAGCTTGGGCTAAGCTTTGTGAGGAGTTTTCACTTTT AGGAACTGAAAGGCCAGATGCTGACCTAGATGTGGATGAGGATGATGCTGATGATAAAGTTGATGATATGACTATTGAAG CTTCAGAAGTTCTATCTGATTCAGAGGAATTTGAGGTGGAAAGGTTGTTGGCGGTTTGCTATGGTGACCCAAACGAAGTC AAAAAACCAGGACTATACTTTAAAGTGCGTTGGAAGGGTTATGGTTCCAGTGAGGATACATGGGAGCCAAGAGAAGGCTT GAGCGATTGCGAGGAAGTTTTGGAAGAATTTGTGAAGAAAGGATATAAGAGAAAGTTATTGCCCCTTCCGGGTGACGCTG ATTTGATATGTGGAGGACCACCATGTCAAGGAGTAAGCGGTTTCAACCGCTTCAGGAACCCTCGGGCTCCATTAGAGGAT ACTAAGAACAGTCAGCTAATTGTGTACATGGACATCATTGATTTCTTGAAGCCAAAATACGTCCTAATGGAGAACGTAGT AGATATTTTGAAGTTTGCTGGTGGTTTCTTAGGGCGTTATGCTATTGGCCGTCTTGTTGCCATGAACTACCAAGCTAGAA TGGGTATGATGGCAGCAGGGTCTTATGGCCTTCCGCAATTTCGGATGCGTGTTTTCTTATGGGGAGCTCGTCCTTCCCAA AAATTGCCTCCATATCCGTTACCAACTCATGAGGTGGTATCAAGAGGTTTCGTACCCGCAGAGTTTGAGGAAATTACAGT TGCATTTAATAAAAAAGAAACTTGTGAGCTGGCTAACGCACTTCTTCTTGAGGATGCAATATCAGATCTCCCTCCAGTTG CAAATGATGAGAGCCGGGATGAAAGGAACTATGGAACCTCTCCTCGCACTGAGTTTCAAAAATATATTAGATTGAGCAAA AGCGAGATTGTGAATAATATGGCTGCTGCTAAAAGCAAACCACAAAGAAAACTGTATGATCATCGTCCTCTGAAATTAAA CAAAGACGATTATGACAGAGTTTGTCAGGTTCCCCAGAAGAAGGGTGCAAACTTCAGAGACCTACGTGGAGTACTTGTGA AGGACAACAAAGCTGTATGGGATCCATCAATTCCAAGAGTCTTGCTAGATTCTGGGAAGCCTTTGGTTCCTTCTTATGCT ATGTCATTTGTTCGTGGGACCTCCACTAAGCCATTTGGACGTTTATGGTGGGATGAAATTGTGCCAACAGTTGTGACAAG GGCTGAACCACACAACCAGGCCATTCTCCACCCCACACAAGATCGTGTACTTACAATTCGAGAGAATGCGAGACTGCAAG GGTTTCCTGATTGCTATAAACTTAGTGGACCGGTGAAGCAAAGGTACATGCAAGTTGGAAATGCAGTTGCGGTTCCTGTG GCTCTCGCCTTGGGATACACGTTTGGCTTGGCCTGCCAAGGGCTGTGTGATGATGAGCCTTTGACAACTCTCCCCTTTAG ATATCCAGTTTGTCTTGCCTCATCTTCAGCTCAAATTGAGAATGAGGATTCTAGTTGA
Protein sequence (LotjaGi2g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKRKRQPPPMAKRKRQPPPPPEEKHDTVSLLPTERKTAKRPSDNSDDDAFFVGKPIPAAEARAKWPHRYPKVEKKGSAR NSNGAKSETENLQVKSHYSQARVDGILYDLNDDAYVKAEDGNADFIARIVEMFETVDDKKYFTAQWFYRAEDTVIKVHSD LVDKKRVFISDVKDENPLDCLVSKLKIAKITSTMGLAARKEIIPSCDFYYDMKYTVPYLTFSNLVSETTRIENDSSSTVS TESGSNACVNDADYVNGGTCQNNSSISSEWTLLDLYSGCGAMSTGICLGASLSGIKLVTRWAVDTNEHACKSLKLNHPET LVRNELAEDFLNLLKAWAKLCEEFSLLGTERPDADLDVDEDDADDKVDDMTIEASEVLSDSEEFEVERLLAVCYGDPNEV KKPGLYFKVRWKGYGSSEDTWEPREGLSDCEEVLEEFVKKGYKRKLLPLPGDADLICGGPPCQGVSGFNRFRNPRAPLED TKNSQLIVYMDIIDFLKPKYVLMENVVDILKFAGGFLGRYAIGRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGARPSQ KLPPYPLPTHEVVSRGFVPAEFEEITVAFNKKETCELANALLLEDAISDLPPVANDESRDERNYGTSPRTEFQKYIRLSK SEIVNNMAAAKSKPQRKLYDHRPLKLNKDDYDRVCQVPQKKGANFRDLRGVLVKDNKAVWDPSIPRVLLDSGKPLVPSYA MSFVRGTSTKPFGRLWWDEIVPTVVTRAEPHNQAILHPTQDRVLTIRENARLQGFPDCYKLSGPVKQRYMQVGNAVAVPV ALALGYTFGLACQGLCDDEPLTTLPFRYPVCLASSSAQIENEDSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 95 | 95 | - | – | |
| MobiDBLite | 17 | 48 | 32 | - | – | |
| PANTHER | 23 | 843 | 821 | 0.0 | – | |
| PANTHER | 23 | 843 | 821 | 0.0 | – | |
| Gene3D | 44 | 210 | 167 | 7.8E-52 | ||
| MobiDBLite | 65 | 81 | 17 | - | – | |
| CDD | 105 | 224 | 120 | 6.89751E-57 | – | |
| SMART | 106 | 225 | 120 | 1.3E-18 | ||
| ProSiteProfiles | 106 | 225 | 120 | 17.327 | ||
| Pfam | 108 | 214 | 107 | 9.9E-11 | ||
| Gene3D | 211 | 605 | 395 | 9.7E-155 | – | |
| SUPERFAMILY | 269 | 806 | 538 | 2.02E-75 | ||
| ProSiteProfiles | 270 | 815 | 546 | 43.35 | ||
| PRINTS | 271 | 287 | 17 | 2.1E-11 | ||
| SUPERFAMILY | 373 | 441 | 69 | 2.93E-15 | ||
| CDD | 383 | 439 | 57 | 1.05925E-29 | – | |
| SMART | 383 | 442 | 60 | 2.8E-11 | ||
| ProSiteProfiles | 384 | 440 | 57 | 14.983 | ||
| Pfam | 384 | 440 | 57 | 2.3E-12 | ||
| ProSitePatterns | 407 | 427 | 21 | - | ||
| Pfam | 448 | 805 | 358 | 3.5E-35 | ||
| TIGRFAM | 452 | 804 | 353 | 3.9E-31 | ||
| PRINTS | 497 | 511 | 15 | 2.1E-11 | ||
| PRINTS | 543 | 556 | 14 | 2.1E-11 | ||
| Gene3D | 606 | 774 | 169 | 2.6E-76 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi2g1v0356800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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