Domain Predictions — View

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cd18635

Source: CDD

Description

CD_CMT3_like

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0750400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|A0A0P0VUY4\|CMT1_ORYSJ DNA (cytosine-5)-methyltransferase CMT1; TrEMBL-Plants: tr\|A0A151THN9\|A0A151THN9_CAJCA DNA (Cytosine-5)-methyltransferase 1; Found in the gene: LotjaGi1g1v0750400_LC	Domains G3DSA:3.40.50.150 IPR029063 PTHR10629 PTHR10629:SF42 SSF53335 cd18635	6
LotjaGi2g1v0224800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0224800	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	36
LotjaGi2g1v0356800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G80740.1 chromomethylase 1; Swiss-Prot: sp\|C0SQ89\|CMT3_ORYSJ DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|I1J8E3\|I1J8E3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356800	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 IPR043151 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SM00298 SM00439 SSF53335 SSF54160 TIGR00675 cd04716 cd18635 mobidb-lite	29
LotjaGi4g1v0146500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp\|Q94F87\|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr\|A0A0B2PQY3\|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500	Domains G3DSA:2.30.30.490 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	32
LotjaGi4g1v0146500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp\|Q94F87\|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr\|A0A0B2PQY3\|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500	Domains G3DSA:2.30.30.490 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	32
LotjaGi4g1v0407700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0407700	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	35

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	16.67