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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0209900 |
| Transcript ID | LotjaGi4g1v0209900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A151SKP1|A0A151SKP1_CAJCA Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48730360..48736399) extracted from Lotus japonicus Gifu genome v1.2.
CATACATAAAAATATAATATAAATCCAATCCAATACAATATTGGATATATCAGAAACAGGTTGAGTTGTGAGTTGTGACA CAATCTGAAACCAAGTCCTTACCGAAAACTAGAGGCCAGTGTCGAGTGTGCGTTGCTTTGTTTATCTCAAACAAAACAAA CAACAACAGAGAGCAAGAGAAGAAGAAGAACAACAACAACAAAGCTCAAAACTATGGCTGCAGAGTCACTGAGAGTGGCT ACTTCTTCTCTTTGCAATCTCAATGGATCTCAGAGGAGGCCAACCCCTCTCTCTCCAGTTCGCTTCGTCGGCATGGAAAA GGGTTTTCGCCCTCGACCCTCTCGCTCCTTCGCTTCATCTTCACTTTCACAGTTCTTTGGCCGTGCCCGAATCAACTCCA ATTCTTTCACTTCACCCAAAAATGGTCCTAGAAGAAGCTTCTCTGTTTTCGCCATGGCCACTGATGGTAACTTTCACGAA CATAGGCTTGGTTTGGTTTGGTTGGTTTCTTAAAAATGTTAATTTGAATGTTTTTATGGAAAAAAAGTAACAGTCTTCTT CAAATTTCATGTTTTTTGTTCGGCCCATTTGTTTATCACTCCTTAGAATTTGCATGCATAATTGAATTTCAGTAAATGTT TGTCTTGGAGAATGTGTTTGAATTGAATTAGGAGGAAAGACATCGTTTTTCAGTTCTATTGAACTTCTAAAATCAGCAAT TGGCTCTTATGAAATGAGAGGTCTTTAAAATGAAATGGTTTTCTATCTCTGTTTGTCCTCTGGTCCAACTTTATGAGGTT TTCACTTGACTATGTGAAGTTGAGTTTTGTGTGTCTCTCTCTTCTTAGGCATTAGATAGGTAGAACCTTATCAAAATTTG TAAATAATTATGAAAATAGAGATAGTTTCAACAATTTTTTCACATGATTTTGTTCTCACGTGAGGGTGCAATCCGTTCAC ACTTGCGAGATGACCCTTTTTTACTTTCTTTCCAGACACGAAGCGTGCTATTCCCTTGAAGGATTATCGCAACATCGGCA TCATGGCTCACATAGATGCCGGAAAGACAACTACAACTGAAAGAATCCTCTTCTATACCGGAAGGAACTACAAAATTGGA GAGGTGCATGAGGGAACAGCAACAATGGACTGGATGGAACAGGAACAAGAAAGAGGGATTACCATTACTTCTGCTGCAAC CACCACATTCTGGAATAAGCACCGGATCAACATCATTGATACTCCTGGTCATGTCGACTTTACCTTAGAAGTGGAGCGTG CTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGGGTGGAACCGCAATCAGAAACTGTGTGGAGA CAAGCTGATAAGTATGGGGTGCCGCGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAACTTTTTCCGAACGAG AGACATGATAGTAACAAACTTAGGTGCTAAACCACTCGTACTTCAGTTGCCAATTGGTGCAGAAGATACCTTTAAGGGAG TCATCGATCTTGTTAGGATGAAAGCTATAGTTTGGTCTGGGGAAGAGCTGGGTGCCAAGTTTGATTATGTAGATATTCCA GAAGATCTTCAAGAGCTGGCCCAGGATTATCGATCCCAGATGATGGAAAATATAGTTGAGTTCGATGACCAGGTTATGGA GAACTATCTTGAAGGAATTGAACCTGATGATGAAACTATAAAAAAATTAATTAGGAAGGGAACCATATCAGCAAGTTTTG TCCCAGTGATGTGTGGTTCAGCTTTCAAAAACAAGGGGGTCCAACCACTGCTTGATGCTGTTGTGGATTATCTGCCATCA CCACTTGACTTACCACCAATGAAGGGCACTGACCCTGAAAACCCAGAAGTGACGATGGAGAGGTCAGCAAGTGATGATGA ACCATTTTCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGCACCCTTACATTTGTCAGGGTGTATGCTGGAA AGCTAAGTGCAGGGTCCTATGTGCTCAATGCTAACAAAGGGAAAAAGGAAAGAATTGGTAGACTTCTAGAAATGCATGCA AACAGCAGAGAAGATGTTAAAATTGCTTTAGCTGGGGATATTGTTGCTCTTGCAGGTTTAAAAGATACTATTACCGGTGA AACATTATGTGACCCTGATAGTCCGATCGTGCTTGAGCGGATGGACTTCCCTGATCCTGTGATTAAAGTTGCAATTGAAC CCAAAACTAAAGCTGATATTGACAGGATGGCAGCTGGTTTGGTCAAGCTTGCACAGGAAGATCCTTCTTTCCACTTCTCC CGTGATGAAGAGATAAACCAGACTGTGATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATAGATTGAAAAG AGAATTTAAGGTGATATCTTTTATTCCACTTTTGAGAATATTCAGTTATCAGTCTGCATGTTTATGTGTGTTTAGTCTAT CCTGTCTTTCAAATATGTGGCTATCCAGTATCCACCACTGATGCTGTGGATAGAGTAGTTGCAATTACAAATAATCAGAA TTGCACATTGACTTGGACTTTAGCACATTTTATAATGGTGGAACCTGTTTGCACTATTAATTATCACTTGTTACCCTTAA ATTGTTAAGATAAGGAGAGTGAAGGAGTGATGTACCATTAAAAAGTTGCGATGCTTTTGGAAATCTGTGTCTATCGTCTG ATTAAGCATTATTATTGGATAATTCGTACTATTTTTTTTTCCTAGTTGTATGACTGTCCCCCTGTGAAGATCTCATTATC AATATTTGTCAATGCAGGTGGAAGCTAATGTTGGCGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAGTCTCGGAA GTGAAGTATGTGCACAAGAAACAATCAGGTGGACAGGGTCAGTTTGCAGATATCACCGTACGGTTTGAACCCATGGAGCC AGGTAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCGAGGGAATACATTCCTGGCGTGATGAAAGGAT TGGAAGAATGCATGAGCAATGGTGTCCTTGCGGGATTTCCAGTTGTTGATGTACGAGCTGTACTCACGGATGGTTCTTAC CACGATGTAGATTCAAGCGTGCTGGCATTCCAGTTGGCAGCTAGAGGAGCTTTTCGGGAAGGAGTTAGAAAAGCTGGACC AAGAATGCTTGAACCTATAATGAAGGTTGAGGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGATCTCAACT CAAGAAGAGGCCAAATCAACAGTTTTGGTGACAAGCCGGGTGGCCTTAAGGTACGTCAAATAACTTGGTTCTCTGTGATT ATTTTATTAAATTTGAACTTTGAAGGAATGGCTTGATAGTGCTTGTGATGTGTTGTTTGTCTGAAAATGCACAATGCTTC ACGCTGATATGTTTTAGACACAATTCTAATTTTTGAGGCAACACCTGAAAATGTAAGAAAGGGGAAATGAAACATGAAAA ATAAATCTCGATGCCATTCCACATAATCTCGCATAGGCCCTCGGAACCTTCTCTGAAGATAAGTCCAGAAAAAGCATTAT ATAACGAATGGAATCATAAGGGCATGCCACTTAGGGGGCTGTTCCCTTGTTAATCATGTAGGTTCATTTACTTATAACTT TTGTAAATCGTGTTTGGCTCAAAAAGTATGGATTTAGTGCATGTTTGGAAACCCCCTTCCACAATATATTCCGAAGGAAG AATCAATTACGGAGAGAAACTTCTGCGAGTAGCTTCCGAGTTTCCAAACCAAAGGCCTTGAGCTCGATGTAGGTCATCTA TATTGATTGAGGCTTGTGACACAAATGTCTTGAACTTGTATATGAATGACTGGGTTGAAATCTGAATGAAGGCTTTTATT CTTTTTTTTCCCATGGATATTGATTTTAGTGTTTCTTCATTTTGGTGTTGGTGAACACAGGTGGTTGATTCTCTAGTACC ACTCGCTGAGATGTTTCAGTACGTGAGTACACTCAGAGGGATGACAAAGGGTCGTGCATCCTACACAATGCAATTAGCCA TGTTTGATGTGGTGCCTCAGCACATTCAGAACCAACTTGCCTCAAAAGAGCAAGAAGTTGCTGCTTAATGTGTTTCCTTG TCTCCTAATGAGGTTCCCTTTGTTAGTTGTACTATGTTCATTGTCCAATATAGCTGGTTCTAATTTTTTATTTATACTTC AATGTATATTTCCTTGTACCACCAATACAAGGTTAGCCAAGAAATTTTCACCGAGGAAAAAGGAATCAAAACGATTTTTC TTACATGAACTGTTACTGGGCAAATATTAATGCTGTAATGCATTTAATTTTTGGGAAAACAAGGTGAACACTTGGATTAG CAGAATCATAGAGAACCAATTTAGTTTGTAATATTGATGTCTTTAAGTTGAGTGCTGTCCATTCTGAATGATTTTGCCGA GCTTATTCATCCATTTGGTTCCTCTAGTGCGGAGTGTACTATAATAGACAAGGGAAATGATATTAAAAATTCAATCACTT GCGTTCTTACTGATTGTTATAGTTCTGTACTCTGTGCGCCTCTCATTTGCTAAATGCATGTTCCATTGTTTAATGGAAAT CTTCTAAGAGTAATTTTACATGCAAAGAAAGAAAATCATCACGACGTGGTTAAAATAATGATATAATTCGTAGTATCATT TTACTAGTAGTAGTCAACCAACCTAATTGATGGTACGTCGTCAGTAATTTGACTTCATACTAGTTACAATTTATTACTGA AGACTTAATCAACAATTCTTTACTGAGATGATGCTCTCTGTTTTCAAATGATCTCTGTTTTCAAGGATCTGTGTATTGGC TTCAAGGTTGTTGGACGAGGCTCTTTTCTCCAGAAATTGTTCCCGTTGCTGAGTTGCTAGCGGGTTAAATGTTGATGTAG AACAGGTGTTGGAAGGTGGTGGGGTGCAAATGGATGGGGAGAAGGTGTTGGTTCTTTCATTCTTTCTGAAATAGGGGGTA TTTAATAATCACTTTCGGGGTTTTATTTCTGGTGCTGGATTGGCTTCTCAGAATTTGCAACTGGATTTATGGGAGGGGAA GATGTTGAAGGTTTGTATCAATGGTGTTTTAATTACCAAGCTGTTCAAGTATTCCGCCCGGTGTCTAGTTCACTAACTAG GTTAGAGAGGGGGACCTCAAAGTGCATCGTTCTGGGTTCTGCAATGTGCTTCCTGTGGCCGGCCTTCTCAACCGTTTGAA GCAAGGCATGGGGCAAGTTACTCAGACGGGTGTTCAACTTTGTATTCTTTTATTGTTTCCTCTTCTTTGGTGTTGTCTGG TGACTCAGACATCGCTCCTTTTGACCATCCATGATTCTAAGGTAGAGGAAGGGTGTTCACCTTCCTCTTCACGGGGAGTG GAAGTTGTTGTTCAAGATGTTTTTATGGATAAGGAAGCCAAATGGAATCAGGATATTCTTAAATCTAAAGGTTAGGTCCC TAATTCCCGAGGTCGTGGCCATCTAAGGAAAATCAAAAGAGGTCATAAATCTCGGGAGACGTCTATTGTTCTACGTGTAG GGTATGTCACGCCGGTTGCAGATATGGTTGAAGGAGCGGTGGCAGTTGTGGTTGAAGGAGGACCAATTCCACCTGAGGTG GTTAACTCTATTCCTTTTCCCGAATGTTCCTCAACAAGTGGTTACTTTATGAGGGCGAAGTAACCACTTAGAAAGTTTTG GGCCTAGAATATGACCATACTTATGGGGAAGCTATTCAAACTTGAGGAGGAGACGAAGGAGTCATATTCTTCTTGAGATC TGTTGATGCTCTTGTTCTTTTCATTTTTGTTTTTGGGGTTAGTGGTTTGTGCACTGTTGGGGCTTTCCGGTTTTTGTCTT GGTGCTTTTGGTGCTACTCTTTGTTTTTTGGGTTTTGTAGAGTGTTTCTTTTGTTTGTTTTTTGTTGGTGTTGGGGCCTT GTTTCAACTATTGATCAAGCTTTGCTTTTTCAGAGTTGCC
CDS sequence (LotjaGi4g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAGAGTCACTGAGAGTGGCTACTTCTTCTCTTTGCAATCTCAATGGATCTCAGAGGAGGCCAACCCCTCTCTC TCCAGTTCGCTTCGTCGGCATGGAAAAGGGTTTTCGCCCTCGACCCTCTCGCTCCTTCGCTTCATCTTCACTTTCACAGT TCTTTGGCCGTGCCCGAATCAACTCCAATTCTTTCACTTCACCCAAAAATGGTCCTAGAAGAAGCTTCTCTGTTTTCGCC ATGGCCACTGATGACACGAAGCGTGCTATTCCCTTGAAGGATTATCGCAACATCGGCATCATGGCTCACATAGATGCCGG AAAGACAACTACAACTGAAAGAATCCTCTTCTATACCGGAAGGAACTACAAAATTGGAGAGGTGCATGAGGGAACAGCAA CAATGGACTGGATGGAACAGGAACAAGAAAGAGGGATTACCATTACTTCTGCTGCAACCACCACATTCTGGAATAAGCAC CGGATCAACATCATTGATACTCCTGGTCATGTCGACTTTACCTTAGAAGTGGAGCGTGCTCTTAGGGTGTTGGATGGAGC TATATGCTTGTTTGACAGTGTTGCTGGGGTGGAACCGCAATCAGAAACTGTGTGGAGACAAGCTGATAAGTATGGGGTGC CGCGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAACTTTTTCCGAACGAGAGACATGATAGTAACAAACTTA GGTGCTAAACCACTCGTACTTCAGTTGCCAATTGGTGCAGAAGATACCTTTAAGGGAGTCATCGATCTTGTTAGGATGAA AGCTATAGTTTGGTCTGGGGAAGAGCTGGGTGCCAAGTTTGATTATGTAGATATTCCAGAAGATCTTCAAGAGCTGGCCC AGGATTATCGATCCCAGATGATGGAAAATATAGTTGAGTTCGATGACCAGGTTATGGAGAACTATCTTGAAGGAATTGAA CCTGATGATGAAACTATAAAAAAATTAATTAGGAAGGGAACCATATCAGCAAGTTTTGTCCCAGTGATGTGTGGTTCAGC TTTCAAAAACAAGGGGGTCCAACCACTGCTTGATGCTGTTGTGGATTATCTGCCATCACCACTTGACTTACCACCAATGA AGGGCACTGACCCTGAAAACCCAGAAGTGACGATGGAGAGGTCAGCAAGTGATGATGAACCATTTTCTGGACTAGCTTTT AAGATCATGAGTGATCCATTTGTAGGCACCCTTACATTTGTCAGGGTGTATGCTGGAAAGCTAAGTGCAGGGTCCTATGT GCTCAATGCTAACAAAGGGAAAAAGGAAAGAATTGGTAGACTTCTAGAAATGCATGCAAACAGCAGAGAAGATGTTAAAA TTGCTTTAGCTGGGGATATTGTTGCTCTTGCAGGTTTAAAAGATACTATTACCGGTGAAACATTATGTGACCCTGATAGT CCGATCGTGCTTGAGCGGATGGACTTCCCTGATCCTGTGATTAAAGTTGCAATTGAACCCAAAACTAAAGCTGATATTGA CAGGATGGCAGCTGGTTTGGTCAAGCTTGCACAGGAAGATCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAGA CTGTGATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATAGATTGAAAAGAGAATTTAAGGTGGAAGCTAAT GTTGGCGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAGTCTCGGAAGTGAAGTATGTGCACAAGAAACAATCAGG TGGACAGGGTCAGTTTGCAGATATCACCGTACGGTTTGAACCCATGGAGCCAGGTAGTGGATATGAGTTCAAGAGTGAAA TCAAAGGAGGTGCTGTACCGAGGGAATACATTCCTGGCGTGATGAAAGGATTGGAAGAATGCATGAGCAATGGTGTCCTT GCGGGATTTCCAGTTGTTGATGTACGAGCTGTACTCACGGATGGTTCTTACCACGATGTAGATTCAAGCGTGCTGGCATT CCAGTTGGCAGCTAGAGGAGCTTTTCGGGAAGGAGTTAGAAAAGCTGGACCAAGAATGCTTGAACCTATAATGAAGGTTG AGGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGCCAAATCAACAGTTTTGGT GACAAGCCGGGTGGCCTTAAGGTGGTTGATTCTCTAGTACCACTCGCTGAGATGTTTCAGTACGTGAGTACACTCAGAGG GATGACAAAGGGTCGTGCATCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCTCAGCACATTCAGAACCAACTTG CCTCAAAAGAGCAAGAAGTTGCTGCTTAA
Protein sequence (LotjaGi4g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAESLRVATSSLCNLNGSQRRPTPLSPVRFVGMEKGFRPRPSRSFASSSLSQFFGRARINSNSFTSPKNGPRRSFSVFA MATDDTKRAIPLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKH RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL GAKPLVLQLPIGAEDTFKGVIDLVRMKAIVWSGEELGAKFDYVDIPEDLQELAQDYRSQMMENIVEFDDQVMENYLEGIE PDDETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLPSPLDLPPMKGTDPENPEVTMERSASDDEPFSGLAF KIMSDPFVGTLTFVRVYAGKLSAGSYVLNANKGKKERIGRLLEMHANSREDVKIALAGDIVALAGLKDTITGETLCDPDS PIVLERMDFPDPVIKVAIEPKTKADIDRMAAGLVKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN VGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEPGSGYEFKSEIKGGAVPREYIPGVMKGLEECMSNGVL AGFPVVDVRAVLTDGSYHDVDSSVLAFQLAARGAFREGVRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFG DKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLASKEQEVAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 82 | 776 | 695 | 0.0 | – | |
| Hamap | 85 | 782 | 698 | 69.149 | ||
| Gene3D | 87 | 376 | 290 | 3.5E-113 | – | |
| TIGRFAM | 88 | 777 | 690 | 0.0 | ||
| Hamap | 91 | 777 | 687 | 108.363 | ||
| SUPERFAMILY | 91 | 366 | 276 | 1.07E-109 | ||
| ProSiteProfiles | 93 | 368 | 276 | 81.206 | ||
| Pfam | 94 | 366 | 273 | 1.6E-69 | ||
| TIGRFAM | 95 | 265 | 171 | 4.5E-33 | ||
| CDD | 97 | 367 | 271 | 0.0 | – | |
| PRINTS | 97 | 110 | 14 | 9.6E-16 | ||
| ProSitePatterns | 136 | 151 | 16 | - | ||
| PRINTS | 143 | 151 | 9 | 9.6E-16 | ||
| PRINTS | 163 | 173 | 11 | 9.6E-16 | ||
| PRINTS | 179 | 190 | 12 | 9.6E-16 | ||
| PRINTS | 215 | 224 | 10 | 9.6E-16 | ||
| SUPERFAMILY | 349 | 489 | 141 | 5.55E-37 | ||
| MobiDBLite | 370 | 390 | 21 | - | – | |
| Gene3D | 377 | 490 | 114 | 1.9E-43 | – | |
| CDD | 395 | 477 | 83 | 8.03368E-45 | – | |
| Pfam | 409 | 476 | 68 | 1.6E-16 | ||
| SUPERFAMILY | 489 | 566 | 78 | 8.27E-24 | ||
| Pfam | 489 | 562 | 74 | 8.6E-31 | ||
| CDD | 490 | 565 | 76 | 1.86595E-40 | ||
| Gene3D | 491 | 565 | 75 | 3.2E-29 | – | |
| SUPERFAMILY | 564 | 684 | 121 | 1.19E-42 | ||
| Pfam | 564 | 682 | 119 | 3.6E-45 | ||
| SMART | 565 | 683 | 119 | 4.2E-66 | ||
| CDD | 568 | 683 | 116 | 1.99747E-68 | ||
| Gene3D | 569 | 772 | 204 | 2.3E-83 | ||
| SMART | 685 | 773 | 89 | 7.0E-42 | ||
| Pfam | 686 | 772 | 87 | 1.1E-24 | ||
| SUPERFAMILY | 688 | 777 | 90 | 1.25E-24 | ||
| CDD | 688 | 766 | 79 | 9.2851E-35 | ||
| Gene3D | 689 | 760 | 72 | 2.3E-83 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
Expression pattern of LotjaGi4g1v0209900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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