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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0209900 |
| Transcript ID | LotjaGi4g1v0209900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48732252..48735687) extracted from Lotus japonicus Gifu genome v1.2.
TCAGCAATTGGCTCTTATGAAATGAGAGGTCTTTAAAATGAAATGGTTTTCTATCTCTGTTTGTCCTCTGGTCCAACTTT ATGAGGTTTTCACTTGACTATGTGAAGTTGAGTTTTGTGTGTCTCTCTCTTCTTAGGCATTAGATAGGTAGAACCTTATC AAAATTTGTAAATAATTATGAAAATAGAGATAGTTTCAACAATTTTTTCACATGATTTTGTTCTCACGTGAGGGTGCAAT CCGTTCACACTTGCGAGATGACCCTTTTTTACTTTCTTTCCAGACACGAAGCGTGCTATTCCCTTGAAGGATTATCGCAA CATCGGCATCATGGCTCACATAGATGCCGGAAAGACAACTACAACTGAAAGAATCCTCTTCTATACCGGAAGGAACTACA AAATTGGAGAGGTGCATGAGGGAACAGCAACAATGGACTGGATGGAACAGGAACAAGAAAGAGGGATTACCATTACTTCT GCTGCAACCACCACATTCTGGAATAAGCACCGGATCAACATCATTGATACTCCTGGTCATGTCGACTTTACCTTAGAAGT GGAGCGTGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGGGTGGAACCGCAATCAGAAACTG TGTGGAGACAAGCTGATAAGTATGGGGTGCCGCGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAACTTTTTC CGAACGAGAGACATGATAGTAACAAACTTAGGTGCTAAACCACTCGTACTTCAGTTGCCAATTGGTGCAGAAGATACCTT TAAGGGAGTCATCGATCTTGTTAGGATGAAAGCTATAGTTTGGTCTGGGGAAGAGCTGGGTGCCAAGTTTGATTATGTAG ATATTCCAGAAGATCTTCAAGAGCTGGCCCAGGATTATCGATCCCAGATGATGGAAAATATAGTTGAGTTCGATGACCAG GTTATGGAGAACTATCTTGAAGGAATTGAACCTGATGATGAAACTATAAAAAAATTAATTAGGAAGGGAACCATATCAGC AAGTTTTGTCCCAGTGATGTGTGGTTCAGCTTTCAAAAACAAGGGGGTCCAACCACTGCTTGATGCTGTTGTGGATTATC TGCCATCACCACTTGACTTACCACCAATGAAGGGCACTGACCCTGAAAACCCAGAAGTGACGATGGAGAGGTCAGCAAGT GATGATGAACCATTTTCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGCACCCTTACATTTGTCAGGGTGTA TGCTGGAAAGCTAAGTGCAGGGTCCTATGTGCTCAATGCTAACAAAGGGAAAAAGGAAAGAATTGGTAGACTTCTAGAAA TGCATGCAAACAGCAGAGAAGATGTTAAAATTGCTTTAGCTGGGGATATTGTTGCTCTTGCAGGTTTAAAAGATACTATT ACCGGTGAAACATTATGTGACCCTGATAGTCCGATCGTGCTTGAGCGGATGGACTTCCCTGATCCTGTGATTAAAGTTGC AATTGAACCCAAAACTAAAGCTGATATTGACAGGATGGCAGCTGGTTTGGTCAAGCTTGCACAGGAAGATCCTTCTTTCC ACTTCTCCCGTGATGAAGAGATAAACCAGACTGTGATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATAGA TTGAAAAGAGAATTTAAGGTGATATCTTTTATTCCACTTTTGAGAATATTCAGTTATCAGTCTGCATGTTTATGTGTGTT TAGTCTATCCTGTCTTTCAAATATGTGGCTATCCAGTATCCACCACTGATGCTGTGGATAGAGTAGTTGCAATTACAAAT AATCAGAATTGCACATTGACTTGGACTTTAGCACATTTTATAATGGTGGAACCTGTTTGCACTATTAATTATCACTTGTT ACCCTTAAATTGTTAAGATAAGGAGAGTGAAGGAGTGATGTACCATTAAAAAGTTGCGATGCTTTTGGAAATCTGTGTCT ATCGTCTGATTAAGCATTATTATTGGATAATTCGTACTATTTTTTTTTCCTAGTTGTATGACTGTCCCCCTGTGAAGATC TCATTATCAATATTTGTCAATGCAGGTGGAAGCTAATGTTGGCGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAG TCTCGGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAGGGTCAGTTTGCAGATATCACCGTACGGTTTGAACCC ATGGAGCCAGGTAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCGAGGGAATACATTCCTGGCGTGAT GAAAGGATTGGAAGAATGCATGAGCAATGGTGTCCTTGCGGGATTTCCAGTTGTTGATGTACGAGCTGTACTCACGGATG GTTCTTACCACGATGTAGATTCAAGCGTGCTGGCATTCCAGTTGGCAGCTAGAGGAGCTTTTCGGGAAGGAGTTAGAAAA GCTGGACCAAGAATGCTTGAACCTATAATGAAGGTTGAGGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGA TCTCAACTCAAGAAGAGGCCAAATCAACAGTTTTGGTGACAAGCCGGGTGGCCTTAAGGTACGTCAAATAACTTGGTTCT CTGTGATTATTTTATTAAATTTGAACTTTGAAGGAATGGCTTGATAGTGCTTGTGATGTGTTGTTTGTCTGAAAATGCAC AATGCTTCACGCTGATATGTTTTAGACACAATTCTAATTTTTGAGGCAACACCTGAAAATGTAAGAAAGGGGAAATGAAA CATGAAAAATAAATCTCGATGCCATTCCACATAATCTCGCATAGGCCCTCGGAACCTTCTCTGAAGATAAGTCCAGAAAA AGCATTATATAACGAATGGAATCATAAGGGCATGCCACTTAGGGGGCTGTTCCCTTGTTAATCATGTAGGTTCATTTACT TATAACTTTTGTAAATCGTGTTTGGCTCAAAAAGTATGGATTTAGTGCATGTTTGGAAACCCCCTTCCACAATATATTCC GAAGGAAGAATCAATTACGGAGAGAAACTTCTGCGAGTAGCTTCCGAGTTTCCAAACCAAAGGCCTTGAGCTCGATGTAG GTCATCTATATTGATTGAGGCTTGTGACACAAATGTCTTGAACTTGTATATGAATGACTGGGTTGAAATCTGAATGAAGG CTTTTATTCTTTTTTTTCCCATGGATATTGATTTTAGTGTTTCTTCATTTTGGTGTTGGTGAACACAGGTGGTTGATTCT CTAGTACCACTCGCTGAGATGTTTCAGTACGTGAGTACACTCAGAGGGATGACAAAGGGTCGTGCATCCTACACAATGCA ATTAGCCATGTTTGATGTGGTGCCTCAGCACATTCAGAACCAACTTGCCTCAAAAGAGCAAGAAGTTGCTGCTTAA
CDS sequence (LotjaGi4g1v0209900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTCTATCTCTGTTTGTCCTCTGACACGAAGCGTGCTATTCCCTTGAAGGATTATCGCAACATCGGCATCATGGC TCACATAGATGCCGGAAAGACAACTACAACTGAAAGAATCCTCTTCTATACCGGAAGGAACTACAAAATTGGAGAGGTGC ATGAGGGAACAGCAACAATGGACTGGATGGAACAGGAACAAGAAAGAGGGATTACCATTACTTCTGCTGCAACCACCACA TTCTGGAATAAGCACCGGATCAACATCATTGATACTCCTGGTCATGTCGACTTTACCTTAGAAGTGGAGCGTGCTCTTAG GGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGGGTGGAACCGCAATCAGAAACTGTGTGGAGACAAGCTG ATAAGTATGGGGTGCCGCGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAACTTTTTCCGAACGAGAGACATG ATAGTAACAAACTTAGGTGCTAAACCACTCGTACTTCAGTTGCCAATTGGTGCAGAAGATACCTTTAAGGGAGTCATCGA TCTTGTTAGGATGAAAGCTATAGTTTGGTCTGGGGAAGAGCTGGGTGCCAAGTTTGATTATGTAGATATTCCAGAAGATC TTCAAGAGCTGGCCCAGGATTATCGATCCCAGATGATGGAAAATATAGTTGAGTTCGATGACCAGGTTATGGAGAACTAT CTTGAAGGAATTGAACCTGATGATGAAACTATAAAAAAATTAATTAGGAAGGGAACCATATCAGCAAGTTTTGTCCCAGT GATGTGTGGTTCAGCTTTCAAAAACAAGGGGGTCCAACCACTGCTTGATGCTGTTGTGGATTATCTGCCATCACCACTTG ACTTACCACCAATGAAGGGCACTGACCCTGAAAACCCAGAAGTGACGATGGAGAGGTCAGCAAGTGATGATGAACCATTT TCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGCACCCTTACATTTGTCAGGGTGTATGCTGGAAAGCTAAG TGCAGGGTCCTATGTGCTCAATGCTAACAAAGGGAAAAAGGAAAGAATTGGTAGACTTCTAGAAATGCATGCAAACAGCA GAGAAGATGTTAAAATTGCTTTAGCTGGGGATATTGTTGCTCTTGCAGGTTTAAAAGATACTATTACCGGTGAAACATTA TGTGACCCTGATAGTCCGATCGTGCTTGAGCGGATGGACTTCCCTGATCCTGTGATTAAAGTTGCAATTGAACCCAAAAC TAAAGCTGATATTGACAGGATGGCAGCTGGTTTGGTCAAGCTTGCACAGGAAGATCCTTCTTTCCACTTCTCCCGTGATG AAGAGATAAACCAGACTGTGATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATAGATTGAAAAGAGAATTT AAGGTGGAAGCTAATGTTGGCGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAGTCTCGGAAGTGAAGTATGTGCA CAAGAAACAATCAGGTGGACAGGGTCAGTTTGCAGATATCACCGTACGGTTTGAACCCATGGAGCCAGGTAGTGGATATG AGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCGAGGGAATACATTCCTGGCGTGATGAAAGGATTGGAAGAATGCATG AGCAATGGTGTCCTTGCGGGATTTCCAGTTGTTGATGTACGAGCTGTACTCACGGATGGTTCTTACCACGATGTAGATTC AAGCGTGCTGGCATTCCAGTTGGCAGCTAGAGGAGCTTTTCGGGAAGGAGTTAGAAAAGCTGGACCAAGAATGCTTGAAC CTATAATGAAGGTTGAGGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGCCAA ATCAACAGTTTTGGTGACAAGCCGGGTGGCCTTAAGGTGGTTGATTCTCTAGTACCACTCGCTGAGATGTTTCAGTACGT GAGTACACTCAGAGGGATGACAAAGGGTCGTGCATCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCTCAGCACA TTCAGAACCAACTTGCCTCAAAAGAGCAAGAAGTTGCTGCTTAA
Protein sequence (LotjaGi4g1v0209900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFYLCLSSDTKRAIPLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT FWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM IVTNLGAKPLVLQLPIGAEDTFKGVIDLVRMKAIVWSGEELGAKFDYVDIPEDLQELAQDYRSQMMENIVEFDDQVMENY LEGIEPDDETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLPSPLDLPPMKGTDPENPEVTMERSASDDEPF SGLAFKIMSDPFVGTLTFVRVYAGKLSAGSYVLNANKGKKERIGRLLEMHANSREDVKIALAGDIVALAGLKDTITGETL CDPDSPIVLERMDFPDPVIKVAIEPKTKADIDRMAAGLVKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF KVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEPGSGYEFKSEIKGGAVPREYIPGVMKGLEECM SNGVLAGFPVVDVRAVLTDGSYHDVDSSVLAFQLAARGAFREGVRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQ INSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLASKEQEVAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 701 | 694 | 0.0 | – | |
| Hamap | 10 | 707 | 698 | 69.149 | ||
| Gene3D | 12 | 301 | 290 | 2.8E-113 | – | |
| TIGRFAM | 13 | 702 | 690 | 0.0 | ||
| Hamap | 16 | 702 | 687 | 108.363 | ||
| SUPERFAMILY | 16 | 291 | 276 | 8.59E-110 | ||
| ProSiteProfiles | 18 | 293 | 276 | 81.206 | ||
| Pfam | 19 | 291 | 273 | 1.3E-69 | ||
| TIGRFAM | 20 | 190 | 171 | 3.8E-33 | ||
| CDD | 22 | 292 | 271 | 0.0 | – | |
| PRINTS | 22 | 35 | 14 | 6.0E-16 | ||
| ProSitePatterns | 61 | 76 | 16 | - | ||
| PRINTS | 68 | 76 | 9 | 6.0E-16 | ||
| PRINTS | 88 | 98 | 11 | 6.0E-16 | ||
| PRINTS | 104 | 115 | 12 | 6.0E-16 | ||
| PRINTS | 140 | 149 | 10 | 6.0E-16 | ||
| SUPERFAMILY | 274 | 414 | 141 | 4.54E-37 | ||
| MobiDBLite | 295 | 315 | 21 | - | – | |
| Gene3D | 302 | 415 | 114 | 1.6E-43 | – | |
| CDD | 320 | 402 | 83 | 8.49849E-45 | – | |
| Pfam | 334 | 401 | 68 | 1.4E-16 | ||
| SUPERFAMILY | 414 | 491 | 78 | 7.19E-24 | ||
| Pfam | 414 | 487 | 74 | 7.5E-31 | ||
| CDD | 415 | 490 | 76 | 2.05214E-40 | ||
| Gene3D | 416 | 490 | 75 | 2.8E-29 | – | |
| SUPERFAMILY | 489 | 609 | 121 | 1.01E-42 | ||
| Pfam | 489 | 607 | 119 | 3.1E-45 | ||
| SMART | 490 | 608 | 119 | 4.2E-66 | ||
| CDD | 493 | 608 | 116 | 1.13364E-68 | ||
| Gene3D | 494 | 697 | 204 | 1.9E-83 | ||
| SMART | 610 | 698 | 89 | 7.0E-42 | ||
| Pfam | 611 | 697 | 87 | 9.3E-25 | ||
| SUPERFAMILY | 613 | 702 | 90 | 1.1E-24 | ||
| CDD | 613 | 691 | 79 | 7.69717E-35 | ||
| Gene3D | 614 | 685 | 72 | 1.9E-83 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
Expression pattern of LotjaGi4g1v0209900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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