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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0256000 |
| Transcript ID | LotjaGi4g1v0256000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT5G39040.1 transporter associated with antigen processing protein 2; Swiss-Prot: sp|Q9FNU2|AB25B_ORYSJ ABC transporter B family member 25; TrEMBL-Plants: tr|I3SLG6|I3SLG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0256000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60994163..60998963) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGCAATTTATTTGAAAACCGAAATTGATTCTGGGGAGAAGCTTCTGTGAGTAGCTTCTCGTGCCATAATTGATTCTG AGGAAAAATAAGCTGATTCGAACATGCTTTAACATCTCATATTCATCTATGTACTATTTTCTTTTGCTAAGTCTGGGCAT CAAAATTTCAGGCGGCAAATGTGGGGTTCGGTAGAGTGCTTTCACTTGTAAGTGGTCAGTATTTTTCTGGATGGATTGGT GCCATGTTTTTGTGGTTGTTTAAAAACTTCTTTTTTTGTTGTTTTTTCGAATAATCACAGGCAAAGCCTGAGGCTGGAAA GTTGGTGGTTGCTACGGTGGCTCTGTTGATTGCAGCCACTTCGAGTATCTTAGTTGTATGCATCATTTACTATCTCTCCT CTGTCTATTTCTCTCTTAAACACATATACTTAAGCACATGTCTTTCTAAAATTTATGTCAACAACATGTGTTTATATTAT TTGCTGCCAATTTACCTGTTGAAGGTGGTTTCTAATTAACATGGAAATGTTCCTGGTGCAGCAAAAATTTGGTGGGAAGA TAATTGACATTGTCTCAGGGGATATGAGGACCACAGAGCTGAAGCAAGAAGCATTAAATGCTGTCAAGAGCACCATCCTA GAAATCTTTCTGATTGTTGTTTTTGGGTATGATTCATCCTTGCTTGAGCAGTTTCCAACTGATCATATAGTTATTTTTTA ATGATTTCTGTTATGTTACATGAATTTCCTTGGGTCTTAATTGGTTCACTGAATTTTCTGGGTGTTACAGTTCAATTTGC ACAGCACTTCGAGCTTGGCTCTTTAGTTCTGCTAGTGAAAGGGTTGTTGCACGACTCAGAAAGGATTTGTTCAGTCACCT TGTAAACCAGGTCAAACAATAGTCATAATGACTCTTGCAGCTTGTTATTAGCCTTAGCTTGCAATTAAGCTTGTTTGTTA TGGATGATGAGTTTTCAGGAGATAGCCTTCTTTGATGTCACTCGAACCGGGGAACTTTTAAGTAGGTTATCAGAAGATAC ACAGATCATAAAGAATGCTGCAACAACCAATCTTTCTGAGGCTTTGAGAAACTTGTCAACTGCATTTATTGGGCTCAGTT TCATGCTTACAACATCATGGAAGTTGACATGTGAGTAATACACGCCCTCCTGCACTCTCATGTTTATCCCAATGTTTTAA ATGGGGGGACCAATCATTGAACCTATGAATACACTGATTCACATTTCTCCAGTTCAACCATATATAGTCAAATAGGTGAT ACTTAACTATATTTAAAATATTATATATTACAAAAGTAATTAGTTAACATAAAAACTCATATGAAATCAAAATAGATTAA ACTTTAAACTAGCATAAATGGGCAATTTTTTATGAGCCTGTATATGATAAAAAATTAATGAGAAAATTGCTAAATAATAT TAATCCATATGTGGACCTCATACATGAGCTTTTCTTTGTCTAAAAAAATATTTTTGGTTGAATAAGCCAAGGTTGAAATC GGTTTGTCATCACTCATTAGTATTTTTTATTGGTTTTGGACTAGCTCAATCAGTTCCTCAACTGCCGTTTTTTGGGCTGT CCAAAATAGTGACCGGAATGGTTCATTGGCTTTCCGATGGAATTGAGTCTGTTAATATATACATTCTTATCCTAATCGGT GCTCTCTTTTTCTCTCTTGACAACAACTTTTAGTGTTGGCTTTGGCTGTTGTACCTCTTATTTCTGTTGCTGTTCGACAA TTTGGCCGTTTTCTGCGTGAACTTTCGCATAAAACACAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGTATGTGA TTATGTGAATGTCTCTCCAAATTAAACAAATACTATAATAGAGGATTTTCAAACTGATGTTACTTTTGTTTGTGTTGCTT AGGAATCCTTTGGCGCAATTAGAACAGTTAGATCTTTTGCTCAGGAAGATTATGAAATAACACGCTACTCTGAGAAAGTT GATGAGACACTTAAGCTTGGACTTAAACAAGCTGTGAGTTGGTCAATTATGTCCTGATTCACATCCTTGTATTTAGTTTA ATATGTTTGTCCTTACAACATCTTGTCTTACCTGTTTGGTGATACAGAAAGTTGTGGGACTCTTTTCTGGAGGCCTTAAT GCGGCATCTACACTATCAGTTATTGTAGTTGTTATATATGGAGCAAATTTAACAATCAAGGGTGCCATGTCCTCGGGTGA TCTTACATCTTTCATTCTTTATAGTCTCTCGGGTAAGTTACTCTTACTAGTTTCCCCTTTTTCATGTGAAGGAAACCTTA TACACAATTGAAAAGTTTGTATAATCCAAGGGTGTTAGTTGAGTAAGTGTATGTTTGGGTAAACTGCTTACACTTATGTT GATAAACACTTAATACACAAATGCTTACTCCTGAGCTTCTAAAATAAACTTTTAATAAAACACCCAACTAAGTGTTTATG CTATAAGATAGGCTCAAATAAGTTCTTCTAGACGTACCCTGAAATGCTAGTTTGTTTTGATTTAGTGATTCATTTCAATG TTAGTTTGATCCGTTTCATTTGAACTGCTAATATTGTATTTATGCTGACTCAATTACTTTGCCTTGTAGTTGGATCCTCT ATATCTGGTCTTTCCGGATTGTATACAGTAGTTATGAAAGCCGCAGGTGCGAGCAGAAGGGTATTTCAAATTATGGATCG TGTCTCATCCATGTCTAAGTCAGGAACTAAATGTCCTCTGGGGTCAGTTTCTTAGATTTCCTAAAGTATTTCTTTAAGTG CTATTTTCTGAGACAGGGGAGTACAGCTGCCCTTCTACTTATTTTTAGTATTTTTCTATCGTAGGACACACCAGTGACCA GTCTAGGATGTGTGGATTAAGGCTCACCTTTTGGACTGAGAAAAAAGTTATTGATGGCTCATTAAGTCATTATGGAACCA ACTGCTATATTTAGACACATCATGACAACCCCTATTTGCTTAATATTATAAGAGAAGTTGAACTTATAATGTAGAGTATG AAAGCCTGACACAGGGTGGGAACACAAAAAATCATAGGCATCTTTCACTCGCGGTTTTATAATGTGAAATTCAGAATCAT TTTATTGTTTAAATATACCTATTTTCTAAAATATTTTCTATACGAGGTATGTGATCTTTTAAAATAAGTGATACTAAATT ATTATTGCAGTGATCAAGATGGGGAAGTGGAACTGGATGATGTATGGTTTTCCTACCCATCTCGCCCAAGTCATCCAGTG CTCAAGGTAGCTGTTCCGTTTTATTTGTTTGCTCGGGTTATACATCTTCAATGGTAAATAACTAAAATAGTACACTTCAT CATTCATTTTAGGGCATTACAATGAAACTGCACCCTGGCTCAAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGGAAAGGT GTAGGCTCTTCTCTTATTATCATCTTCTTTTTCTTTTTCCTTTCTTCCTCTTAATTTTAGCAGCTTATCATTTCGCGAGG TTATTGTTTAACATGCTTGGATTGAACAATATAAAGCAAGGTACAGTGAAGTGAAAGGAAAAACATCATGTGTATGAAAT CGTTGCTTGCTTGTGCAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAA TGGGGTTCCTCTGGCAGAAATATCACACAGGCATTTACACAGAAAGGTATCTTGAGCATTGCTTTTATACATCACTGACA ACAAATTATCCAATTTAGTGTTGTGGAGTCCATTTTTAGTTTTCAGAACATGTATATCTTGTATTATTTTGAGTATGGGA TAGAATCCTATGAAGTCTAGGCGAAAATTTATTAATTCATTCCTTATGCCCATGACATTGTCACCTATTATATTTCATGT TTTACAGCCATGTAATTAAGCTTAAAAGTTAAAACTGGAGTTGTAAAAGTTGATGTTTGAAAAATTAATTATTGACCAAA AAAAAAAATTCAGGGAGGAACTAATTTAACATGATGATAACAAAAGAAACCAAATTCTCCCAAATCTAATTTCTATTGTG ATTTTGATAACTTCAATGCAGTTTACTCCCGTATTTGCAGATCAGTATCGTGAGCCAAGAGCCTACACTCTTCAACTGTT CCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAACTCAACTCTGTTGATATAGAAAATGCAGCTGTAATGTTTCAT GTATTCTTTTACTAACAAGACCCTCTCTCCCAAATCTTGCTTAATGTATGGATTTGAATGCAGAAAATGGCCAATGCGCA CGAGTTCATATCAAAATTTCCGGAAAAATACCAGACTTTTGTTGGAGAGCGTGGGGTAAGGCTTTCTGGAGGGCAGAAAC AGAGAATAGCAATTGCTAGAGCCCTCCTTATGGACCCCAAAATTCTCCTCCTGGACGAAGCCACCAGTGCCTTGGATGCT GAAAGTGAATACCTAGTGCAGGTGATTTCTTTTTCCAGATTCATGTAAACTTCTTCTAATCTTTTAATTTTTGCACCGTA AGCTAATGATGTGATGGATGTGGTGCAGGATGCCATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATA GGTTATCAACTGTTAAAACCGCTAATACTGTCGTGGTTATTTCTGATGGCCAAGTAGCTGAGAAGGGCACACATGATGAG CTTCTCAGCCAGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTCCAAACAACAAAAGATGAAAATCAAGTCATCTA G
CDS sequence (LotjaGi4g1v0256000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGACCACAGAGCTGAAGCAAGAAGCATTAAATGCTGTCAAGAGCACCATCCTAGAAATCTTTCTGATTGTTGTTTT TGGTTCAATTTGCACAGCACTTCGAGCTTGGCTCTTTAGTTCTGCTAGTGAAAGGGTTGTTGCACGACTCAGAAAGGATT TGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTCACTCGAACCGGGGAACTTTTAAGTAGGTTATCAGAA GATACACAGATCATAAAGAATGCTGCAACAACCAATCTTTCTGAGGCTTTGAGAAACTTGTCAACTGCATTTATTGGGCT CAGTTTCATGCTTACAACATCATGGAAGTTGACATTGTTGGCTTTGGCTGTTGTACCTCTTATTTCTGTTGCTGTTCGAC AATTTGGCCGTTTTCTGCGTGAACTTTCGCATAAAACACAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCC TTTGGCGCAATTAGAACAGTTAGATCTTTTGCTCAGGAAGATTATGAAATAACACGCTACTCTGAGAAAGTTGATGAGAC ACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTGGGACTCTTTTCTGGAGGCCTTAATGCGGCATCTACACTATCAGTTA TTGTAGTTGTTATATATGGAGCAAATTTAACAATCAAGGGTGCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTAT AGTCTCTCGGTTGGATCCTCTATATCTGGTCTTTCCGGATTGTATACAGTAGTTATGAAAGCCGCAGGTGCGAGCAGAAG GGTATTTCAAATTATGGATCGTGTCTCATCCATGTCTAAGTCAGGAACTAAATGTCCTCTGGGTGATCAAGATGGGGAAG TGGAACTGGATGATGTATGGTTTTCCTACCCATCTCGCCCAAGTCATCCAGTGCTCAAGGGCATTACAATGAAACTGCAC CCTGGCTCAAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGA CCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTCTGGCAGAAATATCACACAGGCATTTACACAGAAAGATCAGTA TCGTGAGCCAAGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAACTCAACTCT GTTGATATAGAAAATGCAGCTAAAATGGCCAATGCGCACGAGTTCATATCAAAATTTCCGGAAAAATACCAGACTTTTGT TGGAGAGCGTGGGGTAAGGCTTTCTGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTCCTTATGGACCCCAAAA TTCTCCTCCTGGACGAAGCCACCAGTGCCTTGGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGATTCTATCATG AAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACCGCTAATACTGTCGTGGTTATTTCTGATGG CCAAGTAGCTGAGAAGGGCACACATGATGAGCTTCTCAGCCAGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTCC AAACAACAAAAGATGAAAATCAAGTCATCTAG
Protein sequence (LotjaGi4g1v0256000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTTELKQEALNAVKSTILEIFLIVVFGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSE DTQIIKNAATTNLSEALRNLSTAFIGLSFMLTTSWKLTLLALAVVPLISVAVRQFGRFLRELSHKTQAAAAVASSIAEES FGAIRTVRSFAQEDYEITRYSEKVDETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMSSGDLTSFILY SLSVGSSISGLSGLYTVVMKAAGASRRVFQIMDRVSSMSKSGTKCPLGDQDGEVELDDVWFSYPSRPSHPVLKGITMKLH PGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLAEISHRHLHRKISIVSQEPTLFNCSIEENIAYGFDGKLNS VDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIM KGRTVLVIAHRLSTVKTANTVVVISDGQVAEKGTHDELLSQNGVYTALVKRQLQTTKDENQVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 543 | 543 | 2.5E-235 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 2 | 537 | 536 | 0.0 | ||
| PANTHER | 2 | 537 | 536 | 0.0 | – | |
| Gene3D | 3 | 284 | 282 | 8.5E-89 | ||
| CDD | 4 | 268 | 265 | 5.58191E-131 | – | |
| SUPERFAMILY | 12 | 273 | 262 | 1.7E-66 | ||
| Pfam | 14 | 242 | 229 | 1.6E-59 | ||
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 21 | 40 | 20 | - | – | |
| ProSiteProfiles | 21 | 260 | 240 | 53.741 | ||
| Phobius | 41 | 102 | 62 | - | – | |
| Phobius | 103 | 132 | 30 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 133 | 196 | 64 | - | – | |
| Phobius | 197 | 225 | 29 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 226 | 236 | 11 | - | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 237 | 258 | 22 | - | – | |
| Phobius | 259 | 543 | 285 | - | – | |
| SUPERFAMILY | 287 | 532 | 246 | 3.44E-90 | ||
| Gene3D | 288 | 542 | 255 | 1.7E-94 | – | |
| CDD | 294 | 532 | 239 | 2.91361E-134 | – | |
| ProSiteProfiles | 294 | 531 | 238 | 26.617 | ||
| Pfam | 312 | 462 | 151 | 2.2E-35 | ||
| SMART | 321 | 514 | 194 | 1.4E-17 | ||
| ProSitePatterns | 434 | 448 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0256000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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