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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0315000 |
| Transcript ID | LotjaGi4g1v0315000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT1G02520.1 P-glycoprotein 11; Swiss-Prot: sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11; TrEMBL-Plants: tr|G7JR16|G7JR16_MEDTR Transporter ABC domain protein; Found in the gene: LotjaGi4g1v0315000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69193669..69199571) extracted from Lotus japonicus Gifu genome v1.2.
CACCAGAATTATATTTAGCTTTAGGGGAACAATTTTGAGTTTCAAATTCTCCTCATTTATACGTTATAATCCATCATGGT TCTTTTCATGCTCAGGCGTCCGTGAAGTTCGCAGTATTGGGTGTAGGCACCTTTTTTGCAGCGTTTCTGCGTAAGAATGC CAATTCTCTAGCTTAATGTAACTAGAAATATAATTTGGCTTAAATGTAAAAATAACAAAGTTACTAATAGCTGATATCTT CCAGAGGTGGCTTGCTGGGTTATCACGGGGGAGAGACAAGCAGCTAGAATAAGAGCTTTATACCTCAAAGCAATTTTAAG GCAAGATATAAGCTTCTTTGACAAGGAAATGAACAATGGTGAGTTTGGTGAAAGGATGTCAGGTGACACAGTTCTTATTC AAGATGCCATGGGTGAGAAGGTATTAATTCACCACCCCATATCATCACCATCTCATCCAACTATGATGAAAAAAAGTTAA AGATAACTTGTTCTTCCTCCTTTTTGGCTGATATATCTCAGGTAGGACAATTCATAGAGTATGTGGCAGCTTTTTTAGGA GGTTTAGCCATGGCATTCATCAAGGGCTGGCTACTAACCCTTGTTCTTCTATCTTCTATTCCACTTCTTGTCCTCTCTGG TTCACTAATGAGAATTTCTTTCGCAAAGATGGCATCACGAGGACAAGCAGCTTATTCTGAAGCAGCTGCTATAGTAGAGA GGACGATTGGTTCAATTCGAACTGTATGTCAAATGTCAATCTTCAGAGAGAGATTTTCATTACTTTTCCTTCTCATTTTC CTATACACATTCCTTGAATGCAGGTTGCATCATTTACTGGTGAGAACCAAGCTATAGCTCAATACAATCAGTTCTTGACT AAAGCTTGCAGAACTGGAGTGCAAGAGGGATTGGCTACTGGTTTAGGCCTAGGTTCAGTTCGTTTAATTCTTCAAAGCAC TTATGCTATGGCTGTATGGTTTGGAGGGAAGATGATACTAGAGAAAGGTTATACGGGAGGACAAGTAATCGGTGCATTTT TTGCAATGGTGACTGGTTCCTTGTAAGTTAGTTTCTGCTTTACCATCTATATTGTGGGTGTATCATTTCATATCATACAT CCCACTCTCCCAATCTTTCCAAGAAAATTAGATATACATCACATTTTTGTACTAATTTTTTTCCCAGGTCTCTGGGGCAG GCATTTCCAATCTTAACTGCATCGGCTGCAGGACAAGTTGCAGCCTATAAAATGTTTGAGACAATAAAGAGGCAGCCAGA TATTGATGTTTATGACCCTACTGGTCGGCAGCTAGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTT ATCCATCAAGACCAAAAGAAGTGATATTCAATGGATTTTCTATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTAGGG CAAAACGGGAGTGGGAAAACAACAGTTGTCAGTTTGATAGAGATTTTACGATCCACAAGCTGGTGGAGTCCTCATTGACG GTATCAACCTCAAAGAATTTCAACTAAAATGGATCAGACGGAAAATAGGTCTTGTCAGCCAGGAACCAATTCTCTTTACT TGCAGCATCAAAGAAAACATTGCCTATGGTAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCCGCAGCGCTTGCTAA TGCTGCTAAGTTCATAGATAAATTTCCCCATGTGAGCTATCAATTCTTCATTCATCTTGTGAAACTTAACATGTTCTGTT ACTTTTTCAACAATTTCAGTTTCAAATTCCACACGATACTGAAGACTATTATGTGTGTGTGGCAATGTGTGTTCATTGAA AGGACTGTGTGAGTGGCAGTGTGTTTATCGAATGGACTTTAAGACTCACTAGTTTTGTAAGATTTTGAATTTAGGGACTT GACACAATGGTTGGAGAGCATGGAATTCAGCTTTCTGGAGGTCAAAAGCAAAGAATTGCCATAGCAAGAGCAATTATGAG AGATCCAAGAATTCTACTCCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGAGTAGTACAAGAGACACTAG ACCGAATTATGATAAGCCGAACAACTATCATAGTAGCCCATCGCCTAAGCACAATAAGGAATGCTGACATCATTGCCGTT ATTCACCAAGGAAAAGTAGTAGAAAAAGGTAGATATACTATAAGTTACCCCAGAAATGAAATTCGGCATGACCATTTGCT TTCAGCTGTTCCTCTCCCTCTCTCTCTCTCTCTCACGTACAGTCACGTCTTCATTTTCCTTTTACATATGCAATGCAGCG TTCTTAACCTTTTTAACTGATTAGGCACACATGCTGAGCTCGCTGGTGATCCTCATGGAGCTTATAGCCAGCTCATTAGA TTGCAAGAAATTAAAACGGAGTCAGAACCGCATGGTGAAAATGACTTGGATACAGTAGAAAAATTCATAGATTCTGGAAG AGAATCAAGCCAAGAGATTTCCTTCCGGTCTTTAAGCATGGGATCATCTGGAATTGGAAACAACAGTCATCACTCATTCA GAACATCCAATGCTATGCCTGCCACACTTGGTATCTTGGAAGCATCAGAAGGAGAGCCTGAAGTTCTTCCTACAGCAACA TCAGGTCCACCTTCAGATGTCCCAATTCTCCGCCTTGCTTATCTTAACAAGCCTGAAATCCCAGTGTTACTCATAAGGAC TCTAGCAGCAGCTGCAAATGGAGCATTACTACCTGCTGTAGGGCTTCTTGTCTCCATCATGATAGATACTTTCTTTGAAC CTGCAGATGAACTCCGCAAAGACTCAAAGTTTTGGGCATTAATATTTGTTGCCCTTAGTGTGGCTTACTTCTTACTTTAT CCATTGAGATCCTATTGTTTTTCTGTTGCTGGTTCTAAGTTGATAAAAAGGGTCCTATTAATGTGTTTTGAGAAAATAAT TCACATGGAAGTAGGATGGTTTGATAAAGCTGAGCATTCAAGTGGAGAACTTGGAGCTAGGCTGTCAACTGATGCTGCTT CTATTCGAACTTTGGTCGGGGATGCCCTCGGTTCGCTGGTTCAAGATATTGCTACAGTAATTACAGCCTTGGTAATTGCC TTTGAAGCAAACTGGCAGCTGTCTCTCATCATTCTATTTTTGCTACCTCTAGTATTAGTAAATGGATATCTGCAAATCAG GTCCATGCAAGGATTCAGCAAAGATGCAAAGGTTTGTTCCTTACCAACATCAAACGATTGACCATTAATATGGAACCTTG GAAATAGAAATACCTATTTTTTTAAGACAGTATGAATAGGGTGACTGAAAAATGGATGTAAATATAATCTGAATTTGAAG CAATGACATAAAATTCTATTCCCATTTCTGTATGGAAAATGCTATATATGAATAAACCAGAAAAGACAACTCAGAAACCA TTTGATTGCATGTGGATTTTACAGAGAAGTCCTGGTCGTACCATAATTATAGCATGTCTGAATGAGCTTCTCTTTGATCA GAATCAACTCAGAAACCCATAAGCTATCCACAAAAGTGTATCCCTAGAATTGATTTTGGCTTCAGCATCAATTTTAGAAG GGTTTCAATTTTCCAAACATGTATTTATATGGAAAGGTAAATGTAATGGAAGCGTCATGAACCAACTAGCACAAAAGCTT AAATTGTTGGGCGAAGGCACTTGAGTGGTTTTGTGTTATGTTTCTTACACACCCCTTCAATCAAGAGCACATTGGGCTTG AAGTGTGGACAATGCACTAGTCTATATACCTTTTGCAAAGATTCAATTTTTTATTAGAATAATGGGGGAGGATCGAACTC TAGACCAGTTGGCCATAGTGCTCTAACACTATGCCATGAACCAACTATCCAAAGAGTTTAAGTTGTTACGTGAAGACACA TGAATGATTTTATATGATAACTGAAAGAGATGGGGTTTTCTATGAATAAATGTAGCATGACTCTTTGTAGACATACTCAG AGTATAAACGACTTTATGAGGATGAATTGAGTGTGTTTCAACTCTTCATACATTACTATTTATTTTCTACAGTCCTTGTT TCCCTATTTAATCAGTCCTAACAACAATTTGATATGATGCTACTGTGCTTTATATATTTCACAGAAACTATATGAGGAAG CAAGTCAAGTAGGCAATGATGCAGTAGGGAATATTAGAACAGTTTCTTCTTTCTGTGCCGAAGAGAAAGTGATGAAGTTA TACCAGAAGAAATGTGTAGGACCTTTCCAGACAAGTATAAGGCAGGGTTTAGTCAGTGGAACTGGTTTTGGTTTAGCACT CTTCCTTCAGTTCACTGTCCATGCGTGCAGTTTTTATGCAGGAGCCCAACTTGTTGAGAATGGCAAAGCAACAATCTCAG AGGTTTTCCGTGTAAGTTATATCCTAAATTGGTTGCCATGTATTTTTAACTTATCTCAATTGTTATTGACAAAGAATAAG CTAATTTCTCTTATAGATTAAAAAGTTTTTTTTAATAAATAAAAACAAAGATAATTTAAGATCTAAGTTCATCATATTCT TCTAGCAAATAAAAATTTCATTTCCATATTTTCAGGTATATTTTTGTCTCACAATGTCGGCATCAGAACTATCTAAAACT AGCTTCATGGGCCCAGGTGTGAGTAAAGCAAAAAGTTCTGTTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAAAAT AGACCCTAGTGATGAGTCTGGAATGACATTGCAAGATGTGAAGGGAGAGATTGAGTTTCAACATATCACTTTCAAGTATC CAACCAGGCCGAATGTTCATATATTCAGCGATCTTTCCTTGAGCATTCATTCAGGACAGGTAACTTACAACTGATACATT GGCTTGATGCATCATTCTCATAGGAAGACATGATTTTTTTCATCTGAGACTTTCTTAAGAGAGAATCTAAAATTTTGATT ATCCTGATGAAAATCAGACAGTTGCTCTTGTAGGCGAAAGTGGAAGTGGAAAATCAACAGTAATCTTACTGCTGCAAAGA TTTTATGACCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAGCCTAAATGGTTTAGGCAGCA GATGGGCCTGGTAAGCCAGGAACCTGTGTTGTTTAATGACACCATTCGAGCCAACATTGCATATGGAAAAGGCGGTGATG CAACAGAAGCAGAAATTATAGCTGCTGCAGAACTGGCAAATGCTCACAAGTTCATTAGTAGTTTGCAGAAGGTAAATTGC AGTGTGCAATATCTCCATAATCTCTCTTAAACACTAGTTCAACTAGTGTGCATCTTTAAACTTCTGAATTAGTTATTTAG ACACCATATGATATGAATACAGGTCTAAATTCTTGAGATCAATATATTATATATGCAGGGTTATGACACAATAGTAGGGG AGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGAGGGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAGGATTTTA CTACTAGATGAAGCCACCAGTGCACTTGATGCCGAGTCTGAAAAGGTGGTTCAGGATGCACTTGACCGTGTCATGGTGGA GCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGGATCA TAGCAGAGAAAGGAAATCATGAAGCATTACTCCGTAAGGGTGGTAACTATGCTTCGTTAGTAGCATTGCACACAAGCGCT TCTTCATCTTAGACTCCCCTTCGGCTTGTTGCAACTTTTATCAGAGTAAAAATAGATGCTTATGATATTGCTTTATTTAT GTGTAATTTGTAATTTTGTTCTCTTGAAATTACTAATGCTATGAAGGGTTTCCTTGTTTCTTC
CDS sequence (LotjaGi4g1v0315000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGAGAGCATGGAATTCAGCTTTCTGGAGGTCAAAAGCAAAGAATTGCCATAGCAAGAGCAATTATGAGAGATCC AAGAATTCTACTCCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGAGTAGTACAAGAGACACTAGACCGAA TTATGATAAGCCGAACAACTATCATAGTAGCCCATCGCCTAAGCACAATAAGGAATGCTGACATCATTGCCGTTATTCAC CAAGGAAAAGTAGTAGAAAAAGGCACACATGCTGAGCTCGCTGGTGATCCTCATGGAGCTTATAGCCAGCTCATTAGATT GCAAGAAATTAAAACGGAGTCAGAACCGCATGGTGAAAATGACTTGGATACAGTAGAAAAATTCATAGATTCTGGAAGAG AATCAAGCCAAGAGATTTCCTTCCGGTCTTTAAGCATGGGATCATCTGGAATTGGAAACAACAGTCATCACTCATTCAGA ACATCCAATGCTATGCCTGCCACACTTGGTATCTTGGAAGCATCAGAAGGAGAGCCTGAAGTTCTTCCTACAGCAACATC AGGTCCACCTTCAGATGTCCCAATTCTCCGCCTTGCTTATCTTAACAAGCCTGAAATCCCAGTGTTACTCATAAGGACTC TAGCAGCAGCTGCAAATGGAGCATTACTACCTGCTGTAGGGCTTCTTGTCTCCATCATGATAGATACTTTCTTTGAACCT GCAGATGAACTCCGCAAAGACTCAAAGTTTTGGGCATTAATATTTGTTGCCCTTAGTGTGGCTTACTTCTTACTTTATCC ATTGAGATCCTATTGTTTTTCTGTTGCTGGTTCTAAGTTGATAAAAAGGGTCCTATTAATGTGTTTTGAGAAAATAATTC ACATGGAAGTAGGATGGTTTGATAAAGCTGAGCATTCAAGTGGAGAACTTGGAGCTAGGCTGTCAACTGATGCTGCTTCT ATTCGAACTTTGGTCGGGGATGCCCTCGGTTCGCTGGTTCAAGATATTGCTACAGTAATTACAGCCTTGGTAATTGCCTT TGAAGCAAACTGGCAGCTGTCTCTCATCATTCTATTTTTGCTACCTCTAGTATTAGTAAATGGATATCTGCAAATCAGGT CCATGCAAGGATTCAGCAAAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGGCAATGATGCAGTAGGGAATATT AGAACAGTTTCTTCTTTCTGTGCCGAAGAGAAAGTGATGAAGTTATACCAGAAGAAATGTGTAGGACCTTTCCAGACAAG TATAAGGCAGGGTTTAGTCAGTGGAACTGGTTTTGGTTTAGCACTCTTCCTTCAGTTCACTGTCCATGCGTGCAGTTTTT ATGCAGGAGCCCAACTTGTTGAGAATGGCAAAGCAACAATCTCAGAGGTTTTCCGTGTATATTTTTGTCTCACAATGTCG GCATCAGAACTATCTAAAACTAGCTTCATGGGCCCAGGTGTGAGTAAAGCAAAAAGTTCTGTTGCTTCTATATTTGCTAT TCTTGATCAGAAATCAAAAATAGACCCTAGTGATGAGTCTGGAATGACATTGCAAGATGTGAAGGGAGAGATTGAGTTTC AACATATCACTTTCAAGTATCCAACCAGGCCGAATGTTCATATATTCAGCGATCTTTCCTTGAGCATTCATTCAGGACAG ACAGTTGCTCTTGTAGGCGAAAGTGGAAGTGGAAAATCAACAGTAATCTTACTGCTGCAAAGATTTTATGACCCAGATTC AGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAGCCTAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCC AGGAACCTGTGTTGTTTAATGACACCATTCGAGCCAACATTGCATATGGAAAAGGCGGTGATGCAACAGAAGCAGAAATT ATAGCTGCTGCAGAACTGGCAAATGCTCACAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACAATAGTAGGGGAGCG AGGAGTTCAATTATCTGGGGGACAGAAGCAGAGGGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAGGATTTTACTAC TAGATGAAGCCACCAGTGCACTTGATGCCGAGTCTGAAAAGGTGGTTCAGGATGCACTTGACCGTGTCATGGTGGAGCGA ACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGGATCATAGC AGAGAAAGGAAATCATGAAGCATTACTCCGTAAGGGTGGTAACTATGCTTCGTTAGTAGCATTGCACACAAGCGCTTCTT CATCTTAG
Protein sequence (LotjaGi4g1v0315000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGEHGIQLSGGQKQRIAIARAIMRDPRILLLDEATSALDAESERVVQETLDRIMISRTTIIVAHRLSTIRNADIIAVIH QGKVVEKGTHAELAGDPHGAYSQLIRLQEIKTESEPHGENDLDTVEKFIDSGRESSQEISFRSLSMGSSGIGNNSHHSFR TSNAMPATLGILEASEGEPEVLPTATSGPPSDVPILRLAYLNKPEIPVLLIRTLAAAANGALLPAVGLLVSIMIDTFFEP ADELRKDSKFWALIFVALSVAYFLLYPLRSYCFSVAGSKLIKRVLLMCFEKIIHMEVGWFDKAEHSSGELGARLSTDAAS IRTLVGDALGSLVQDIATVITALVIAFEANWQLSLIILFLLPLVLVNGYLQIRSMQGFSKDAKKLYEEASQVGNDAVGNI RTVSSFCAEEKVMKLYQKKCVGPFQTSIRQGLVSGTGFGLALFLQFTVHACSFYAGAQLVENGKATISEVFRVYFCLTMS ASELSKTSFMGPGVSKAKSSVASIFAILDQKSKIDPSDESGMTLQDVKGEIEFQHITFKYPTRPNVHIFSDLSLSIHSGQ TVALVGESGSGKSTVILLLQRFYDPDSGQITLDGTEIQKLQPKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI IAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPRILLLDEATSALDAESEKVVQDALDRVMVER TTIVVAHRLSTIKGADLIAVVKNGIIAEKGNHEALLRKGGNYASLVALHTSASSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 772 | 772 | 0.0 | ||
| PANTHER | 1 | 772 | 772 | 0.0 | – | |
| Phobius | 1 | 213 | 213 | - | – | |
| SUPERFAMILY | 1 | 108 | 108 | 6.19E-39 | ||
| Gene3D | 1 | 113 | 113 | 4.5E-53 | – | |
| Pfam | 3 | 37 | 35 | 1.0E-9 | ||
| Gene3D | 196 | 496 | 301 | 3.4E-71 | ||
| SUPERFAMILY | 197 | 515 | 319 | 4.32E-59 | ||
| CDD | 199 | 514 | 316 | 4.09232E-106 | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Pfam | 210 | 480 | 271 | 5.1E-57 | ||
| ProSiteProfiles | 213 | 496 | 284 | 41.911 | ||
| Phobius | 214 | 238 | 25 | - | – | |
| Phobius | 239 | 249 | 11 | - | – | |
| Phobius | 250 | 268 | 19 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 269 | 350 | 82 | - | – | |
| TMHMM | 350 | 372 | 23 | - | – | |
| Phobius | 351 | 370 | 20 | - | – | |
| Phobius | 371 | 775 | 405 | - | – | |
| Gene3D | 497 | 523 | 27 | 4.7E-144 | ||
| SUPERFAMILY | 520 | 768 | 249 | 1.3E-90 | ||
| Gene3D | 524 | 772 | 249 | 4.7E-144 | – | |
| CDD | 531 | 766 | 236 | 1.1492E-129 | – | |
| ProSiteProfiles | 531 | 768 | 238 | 24.543 | ||
| Pfam | 550 | 699 | 150 | 1.1E-36 | ||
| SMART | 558 | 751 | 194 | 7.8E-19 | ||
| ProSitePatterns | 671 | 685 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0315000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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