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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0327700 |
| Transcript ID | LotjaGi4g1v0327700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70577295..70582831) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTGATAAGCACTTTTAATTTATCTAATGGTTTTAAATTTGAAGTTTAGCATATGATTGTGTTATTAATTTAATTT AAGAAACGGTGGTTGAGTTGATTATGGTTATGGGTATTATCCACACACACAGACAATTTAATTGCTTTTTCCCTCTTCAC TCTCTGCTGCTCACTGACAATTTCTTCTTCTACTTCTTCTTCTTATTCTCTGTTTGGTTCTTCATTATCTATCCATTGTT GCAGGCAAAATCACTTTTAGCAATGGAAGCTGCTGCAGCGCGCTCTATCCCTCGCACTGTCGAAGAGATTTTCAAGGACT TCATGGGCCGTAGGGCCGCTATGATCAAGGCTCTCACCACTGGTATCTTCTACCCAACACTCCCACTTTTCTTCCTGTTT TCCCACTTCCAAGTTTTAGGGTTCCTTATCTGTTTTTCATCATACACATTCTGACTAACATTCAACTTTGCTTTTTTCTT ATTTGCCAGATGTTCAAGAATTTTACCAGCTCTGCAATCCTGGTTAGGGTTCCTTACATTTTTTTTAAGTCTTTGCTCTC TCATTCTCTATTTTTTGCATGTTTTTTTGAGTCTGTATTTATAATTCATACTAATTTTTCATTTTATTTTCCTTGCATGA TTGTGTCATTAATAATTAGTTTCTGCATTTTACTCAAAAATAGTGCGTTTCAAACAAGTGGGATAGTGTAGTGGTTCAGC ATTTCGTCCCTTAAGTAACTGGGTGAGAAACTCATTGGCCAACCACCTACAGCTTAGTGCGCTGACAGGCGAGAAATTAG GCCCCGTTTCGAAGAGTTTATTTGAGCTTATCTGATGGCATAAGCATTATGTCAGTGTTTGGCAGAGCTTATGCAAACAA CTTATGACCTACCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAGGACAGCTTATGAAAAAGAGCTTATGCTTAT ATATAGCTTATTTTCAATTTATTTCAATAAATTTTATAAAATAGCTTATGAATAAGCGCTTAATTAAGCTGTTTTTCCAA ACTGAACCTTAGTCTCACGGTTACTGACTGGGAATACTTTGGTTAACAATATAAAAAATAGCGTGTTTCGTTAAACTAAT TTTTTTTTCCTGGTTGTTATTTGCTATGTTTAGATTATTGTATCATGTTGTAAATGATGGGCAGGGCGGAGGAAATTAAC TTGACAATGCATGTGAACTAAAGTGTAATTATGTATTGATGCTTCATTTGTTTAACTTTTGTGTTGTGCTGCAGAGAAGG AAAACCTTTGTCTGTATGGGTTCCCTAATGAGCAATGGGAAGTGAATTTGCCTGCTGAAGAAGTTCCTCCGGAACTTCCG GAGCCTGCACTGGGCATAAACTTTGCTAGGGATGGCATGCAAGACAAGGACTGGCTGTCTTTAGTTGCTGTTCATAGTGA TGCCTGGTTACTTTCTGTGGCTTTCTTCTATGGGGCAAGATTTGGTTTTGACAAAGCTACCAGGTGTGGTTTGGTTTTTC TGATTATTTTATTGTGTGGTGCACAAGCAATCTTTTTCTATGTTGGACGCGAAAACGTTTTGGATGCCTGTCATTTTCTA TTTCTTGCGCATGTTTGCAAATTCTTCTACAATTGATTCTATGTCAAAATCAATTATAGGGAGAAACATCTGTGAGTAGC TTATTGGTTTTAGAATTGCTTCTAAGGAAAGAAAGGTTGATTCAAATATGCTATTAGTTATGGTCTGTTTGTATTACATT TTACTGAGTTGATTTCCTGATACTATTTCTACAAATGAAAGCATTTTTCCCCTTCCAACAAATGAAATTTGATACGAACA CGCTGGTTATGGAAAAACATGATAATTTATTGTTTACAAGAAATATTGTTTAGGAATGAAGATCAAGGGATTCTTTTTGT TTCACAGCCATATGAATTTCTCTCCTGTGTTTATTGTCTTCTGAGTATCTGTTTGACTTGAGTTATGATTCCTGGATAAG TACATTTTTCATGGAAAAGGTTTTAAGTAAAAACAAAAATTCACAAACTCAGTCTGTCATGGGTGGGTTAGAGTGCCTAA TTTTTTGTTATATAAACGGAAAAGCACCCAAGAAAAGCATAAGCAAGGCAATATTCTTTGTCAGTCTTCTTATTCTTCCC TTATGCTGGATCATAATGTATTTTGCTAATGATCAGTTTTAGAAAATAGCACTGTGAGCATACTCAGTAATGTAATTGTA GAAGAAAGGCACCTTTTACAGAATTTGCATTTGGGATTGTAAGCTTTTCTCTCCATAGATATAAAAGGATTTAACACGTT TCAGCATTTAGTTGTGTCTATATGATGGAATGTTAGCTTAGCTATAAATTTCCATTTATGTTAAGGTTATTCTGACCTGT GCAACAATGCCTAGGATAAGATACAAAATTGAAAAGTTTTTATTGGAAAATAAAGCATTTATTGCACTTTTATATTTCCG ATGTAATAAATATTCTCTTTTGCAATATAAATTTCCACTTTTATATCTTTGTGCTACTATGCAATGTTGCATATGTTAGA AGAACTGTTTATATTAAGCCTCCTCGATTTTGGATTGGCTAACAAGTACTTGTAAGTGTCTTGGTCATTGTTTGGCATAG TTATTGGTTCTAGACAGGGATGCTAAACAAGCTGGATGGAATAGAGAACTGATGTATATGATAAATGTCAACAAATCAAA GACAACAAATTGATTGCCGCCTGTGTTTGGTAGATTTATAACTGTGATTTATATCCTGGTTTATGATAATATGCAATTCT CTTTGCAGGAAACGCCTGTACGCTTTAATTAATGATCTACCTACAATATTCGAGGTTGTGACCGAAACTGCAGAGAAACA GGCTAAGGAAAAGTCATCAGTTTCAAACATCGCCAGCAACAATACAAAGACCAGTTCAAAAGCGGTAAGACAATCCCTTA TCCTCCACTCTTCCTTGTTTATCATTTTCTTTTATCCACATGTTTTTTAGGGTCATAATCACATTAGATAATGTTTAAAC CCTGGTAAAACATCGGCAGCGAGTCACTTTAATATTCTGTAAACTCCTTATTCTTGGTTTTTACATATAATTGTCATGCT GCTTACTTATTTATTTATTTCCTTCTTAACATGTCACGTCTGCATTATTGTTTCCTTATTGGAACTAAATAGGGAGGCTC TGAATCAGTGAAGTATTTGAAGCAAGTAAAGGACGAGGATGAAGAAGAAGATGATGAGGAGCATGGGGAGACATTGTGTG GCGCTTGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAACTGGTTCCATGGCAAGTGT GTGAAGATCACTCCTGCCCGGGCAGAACACATTAAGCATTATAAGTGCCCCTCATGCAGCAGTAAGAGAGTTCGGGTTTG ATATCGTAGGGATGTGGTTAGTCCTCACCTTAGTAAAGCATTCCAATGTGAAAGCAAAGATTTAGTTCCATTGGTGAAAA CATACATTTAGAGGCTTTGAAATTTCAAGCCAAACATACTTTTAATCATGGCGGACTTCTAGCTAGTTATCGTAGCTTAG ACTTCATTTGTCATGCCATGTTGGTACGGCATATGTATTCAGTATTTCTGTCGTGAATTTATGTGGATATGTTTTTTTAA TATTTGATAGTATTCAGACTTATATTTTTTTTTAATATTTGATAGTATTCAGACTTACATTTACCTCAATCACTACCTAG GTATATATTTGTACCTAAGTTGCATTTGGTTGATCAGATTTATGATCTGCCCGATGTAAGCATTCTAGCGTCTGCCCTAG CTTTGGAAAAGCAAATTCACTTGCGGAGTTATGGTGCAAACTGCAAAGTACCTTACAGTCAAATTTTTCATTAAGCATTT TGCATATTGTATGCAACTGCAATAATTCTGGGTTCTTCCTTTAAGCTCTGCCAAGCCACAGGAACATGGAAAATACTATG GTAATGCTTTTGGAAGGAACCACAAAAGCCAGTAAATATTTTTATTGCAGGTTCGTTTGCAACATACAACAGTTCACACA GTGATATTATTCCACTTATTTGTGGTTGTGGACTGCAATACAATTTACTGGATACAAAAGCTAATTCTAGAGTACAAATG CAACAGATGCATGCTTTACTAAAGAATGCGCCTACGTTGAAGTACATCTCGGCATCTCAGAGACTTTGCATTTATTCACT CTGCTTCTCATAAGGTAAAACTGAATCACTCACTCCACTCGCGAGTCAACGTATTCTTAATGTTTCATTCCGTATAATGA TATTGGGATTTCTTATATGTGGATTTAGTGCTACCAATTCCTTCCATTTCGCTCCGGTACCATAAATTCGAGATGATATG CTCCACAATGTGTCACCAGGTTGCACCTTTGTGATGACCGGAACACTAGATTTAGATGCAGCCTTTGATTTCACTATTTG ATTGTTCTTATTACCCTTTCCCATTCCATTAGCAAGCAACCAGCGAGAACCTGATTGTTGCTGACTTGAACTGCCCCAAA GCTTCTTTTTGCTAGGCTCGGTCTTCAGTCCTGCAACATGGATTTCTGTAATTCTGAACTGAGGAATGACCTCCTCTTTA GAACTTTTATCCTCTTTGTCGTCCTTCAACTCCACTTTTGCTACTATTTCACACTCATCCTCCTTGTCATTATCATTCCT GACCTCAGACACTCTCATGTAGATTTTTTGCTTTGGTGGAACAAACACTCTCTCAACTTGGACAAGAGCAAGCATTGGTG TTCCAACAGGCTCGTAATTTCTCAGAGGATCATGAAGTTGCACCATTAATGCTATTGTGACATTGTTTCCAAGCAAACCG CATTTCTTGTCTTTGCCCCTTTTCTTTTCTCCTTTTGAGCTCCCACGAATCAGGTCAAAAGAGTTGGCATGATGGGCAGC AAGTAGCTTTGAAGTATGCTCGCTTATATTATCGATATCATCAATCTGACCTGAATCCAGCTTCATCCATTCATCAAGTC TCAATGATAGACCCATTATCCCATCAATACTAGTGTTGCTGTCTTTCATATCCAACAACTGCAATGCAGCAGCTCCATCT GAGCCACATGAGCCACTAACATTAACCCCTTTGTCTTGGAGAGTTGAAATATCTCCAAAGGATTGAGCAATGATGTTTGA TGGTGCATCTTCCTCTGACATCCCAGATTGTATTCTCAAACCCTCCAATGAAAGTGCTTCAATTTTATCCATAGCTAATG GAGCAAGATCTTCCAATGAAACAAGCCCTATCTGGTTACCAACTGAACTTGAACTAAACTTATTACCAGACCTGACTCCA GATAATGTTCCTTTCAAGCCTGTTAGTATGCGAGTAGAATCTTGTCCTGTTACCAAATCATGCCGCAAATAGCTTTGCCT ACATAAAACGAAACCAAATCCAATCAGTGTGTTTATATACTAGTTAAGTGCAACATGAAAAGACTTTCATCTCAATCTAT GAGAAGAATTCCGTTAA
CDS sequence (LotjaGi4g1v0327700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTATGGGTATTATCCACACACACAGACAATTTAATTGCTTTTTCCCTCTTCACTCTCTGCTGCTCACTGACAATTT CTTCTTCTACTTCTTCTTCTTATTCTCTGTTTGGTTCTTCATTATCTATCCATTGTTGCAGGCAAAATCACTTTTAGCAA TGGAAGCTGCTGCAGCGCGCTCTATCCCTCGCACTGTCGAAGAGATTTTCAAGGACTTCATGGGCCGTAGGGCCGCTATG ATCAAGGCTCTCACCACTGATGTTCAAGAATTTTACCAGCTCTGCAATCCTGAGAAGGAAAACCTTTGTCTGTATGGGTT CCCTAATGAGCAATGGGAAGTGAATTTGCCTGCTGAAGAAGTTCCTCCGGAACTTCCGGAGCCTGCACTGGGCATAAACT TTGCTAGGGATGGCATGCAAGACAAGGACTGGCTGTCTTTAGTTGCTGTTCATAGTGATGCCTGGTTACTTTCTGTGGCT TTCTTCTATGGGGCAAGATTTGGTTTTGACAAAGCTACCAGGAAACGCCTGTACGCTTTAATTAATGATCTACCTACAAT ATTCGAGGTTGTGACCGAAACTGCAGAGAAACAGGCTAAGGAAAAGTCATCAGTTTCAAACATCGCCAGCAACAATACAA AGACCAGTTCAAAAGCGGGAGGCTCTGAATCAGTGAAGTATTTGAAGCAAGTAAAGGACGAGGATGAAGAAGAAGATGAT GAGGAGCATGGGGAGACATTGTGTGGCGCTTGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATG TGAGAACTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCCGGGCAGAACACATTAAGCATTATAAGTGCCCCTCAT GCAGCAGTAAGAGAGTTCGGGTTTGA
Protein sequence (LotjaGi4g1v0327700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMGIIHTHRQFNCFFPLHSLLLTDNFFFYFFFLFSVWFFIIYPLLQAKSLLAMEAAAARSIPRTVEEIFKDFMGRRAAM IKALTTDVQEFYQLCNPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLSVA FFYGARFGFDKATRKRLYALINDLPTIFEVVTETAEKQAKEKSSVSNIASNNTKTSSKAGGSESVKYLKQVKDEDEEEDD EEHGETLCGACGENYASDEFWICCDICENWFHGKCVKITPARAEHIKHYKCPSCSSKRVRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 27 | 46 | 20 | - | – | |
| Phobius | 47 | 143 | 97 | - | – | |
| PANTHER | 58 | 300 | 243 | 8.5E-144 | – | |
| PANTHER | 58 | 300 | 243 | 8.5E-144 | – | |
| Pfam | 65 | 192 | 128 | 2.7E-65 | ||
| Phobius | 144 | 165 | 22 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 166 | 301 | 136 | - | – | |
| MobiDBLite | 201 | 222 | 22 | - | – | |
| SUPERFAMILY | 236 | 298 | 63 | 2.88E-17 | ||
| Gene3D | 240 | 300 | 61 | 6.8E-24 | ||
| ProSiteProfiles | 245 | 297 | 53 | 9.401 | ||
| SMART | 247 | 295 | 49 | 5.8E-9 | ||
| CDD | 247 | 297 | 51 | 8.42268E-31 | – | |
| ProSitePatterns | 248 | 294 | 47 | - | ||
| Pfam | 248 | 296 | 49 | 5.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi4g1v0327700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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