Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0260600.1

Overview

Field Value
Gene ID LotjaGi6g1v0260600
Transcript ID LotjaGi6g1v0260600.1
Lotus japonicus genome version Gifu v1.2
Description Galactokinase; TAIR: AT3G06580.1 Mevalonate/galactokinase family protein; Swiss-Prot: sp|Q9SEE5|GALK1_ARATH Galactokinase; TrEMBL-Plants: tr|I1MRT3|I1MRT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0260600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57326429..57332243) extracted from Lotus japonicus Gifu genome v1.2.

AATCCCAGTACAGAAGGTGAAAAAAAAAACAATTTAAGAAAATGATAAATACAAAAACCAAAAATGGTATCCATAGCTAT CTGATAATCTGTCCATTACTCAAAACAGGCACGTCACTTAAAAACGATTCCGTTTTGGTTCTTGTCACCTGAAAAGCTTT CGATAGAGACGGTGAGTGTTCGTAAGCGTGTTTCTGTGTGAAATTGCAGAGAGTTGAATCGTGATTCAGAAAAATGGCGA AACACGAAGAGCTTCCAGTCCCTGTTTTCGAAACGCTGGAACCTGTATACGGCGGTGGTTCTGAACTGGAAGAAGCTCAG CTTCGTTACGATAATTTGAAGTCTAAATTTCTCAGCATCTTCGGTCACAATCCTCAACTCATGGCTCGTTCTCCTGGTTC GGTTCTCTTCTCTTCTCCCTGTTGAAACCAAGAGAAAACATTGATTGATTGTTGTTGTTAATTTATGACGGTTTCTATTA TTGTCATGGCAGGGAGAGTGAACTTGATCGGGGAACACATTGATTATGAAGGCTATTCGGTGTTACCTATGGCAATTCGG CAAGACACGATCGTGGCCATTCGGAAAAACGAAGATCAAAATGTTCTTAGGATTGCTAATGTTAATGATCAAGCTTATGC TACTTGTACTTATCCTGCTGATCCTAACCAGGTCCAATATCTTGAATTACTCTGAATAATTCATATAATAATGATAATAA TTTCATTGCATGTTGTTTAATCATTCATTTTGGCTTTTATGTATTTTGTTTGCGTTTTTTTTTTACTTTCATGCAGGAGC TTGACTTGAAGAATCACAAATGGGGCCACTACTTTATTTGTGGGTGAGTTTTTGTTTTATTTAAAAAAAAATTCCTATAT TTCCTAATATATGGTTGTTTTTAAGCTAATTTTTGCAATTTGTGGGTGAGAAAGTTAGATTTGTATTGTTGTTTAACTGA GTGATGTAATGTATAAGAGCATTTCTATTTAGGCCGAATGAATGACCACACGAAACAGCCGAATGTTTGCATGGCCGTTT ACAATTGGTGAAAATAAATTATTATCATTCAATGCTAGAAACCAAAGTATCTTCTATTGACCAATCAGAAATGGAAACGA AATTTCGTTTCGTACTGTTTAATCATTTTCCAATGTATAAACATGTAAGATAATACGGTTTCTGCAGGTATAAAGGCTTT CATGATTATGCGAAATCGAAAGGAGTTGATGTTGGTCCACCGGTTGGGCTTGATGTCCTTGTTGATGGAACAGTTCCCAC AGGTGTGTTCTTTTGTTTAGAATAGAATAGAATCAGAATTGGTGCTATTACTGAGGGTATATCCAAATTTATCGTTAAAT GAACCTCGCGTGTTGCGTGCCCTCTTTGAAGCTCTGTTAGACATGACATGTCTTTTGATTATTAATGAGGCTATATTCAA TGAAAAATGTTTATCTTTATACAGGTTCTGGACTATCGAGCTCTGCAGCATTTGTTTGTTCTTCCACAATTGCTATTATG GCTGCTTTTGATGTGAACTTTCCAAAGGTATGCTACTATGCTTCTTATGCTGTATATTGTGTACTACTTTGTGCTTTCGA AAATATTTTTGTTATTTGTTTTCTGTATTCTCCTTTTCTGTTATTTTTCTGTTACTAACTTATGTGTATTGTGGACAGAA AGAAGTTGCACAACTTACATGTGTGTGTGAACGGCACATTGGTACACAGTCTGGGGGGATGGATCAGGTTGTATTCCATC TTTTCATATATGTTCTATTTTTATTTTAATGTGAATAAGTCCCAATTACCTATCCGAGCATTGGTCGTTTTCTTTAACTC ATCTCCCCATGGAATGACCTTCACAACTAATTTGCAGACCATCGTATCAATTTGAACTGGTTGACTAATTTTGCTTTTGA CTTATACTTGAAATATATGTTCTCTGAGGTTAATCTATTTATTCTGGGTGATGTATGTAAATTCTATTGTCTTTTGAGTT GGAAATGTTACAGATGGTTTAATTTCTGTAATTTGTAAGGCTGGTTTCTGCTAAGTCACTATGCTTGTAGCCTCAATTTA AAATCATTATATGATTTAACTCATAATGGAGCAATAGTGCAATGTCTACTTGTCATAGTTTGTATGTGTGTGTGAATAAT TTTGAATTCAAGTCATTTGATCAATGTAACTGACTCTGCCTTGTGGGAAAATGGCTTTTTTTGTTGTTATAAATAATTTT AAACTTTTACATGGTAGGCACACATTATTTTATTCAATGCATTGTTTGGACAAGACTCCAATGCCAATTTGTCTTACTCC TTTGCACATTCTGAGTTCTGACATTGTACCTAGATTTATATTTTTTCTTTTACTTCATAGGCAATCTCTGTCATGGGAAA AGCTGGGTTCGCTGAGCTGATTGATTTCAACCCAATCCGTGCAACAGATGTGAAACTTCCTGCTGGTGGAACTTTTGTGA TTGCCCATTCTTTGGCAGAGTCTCAGAAGGCTGTTACCGCTGCTACAAATTATAATAATAGGGTTCTTGAATGCCATTTG GCTTCTGTAAGTGCTTTGCAACTTAAGTTCAATTTTCTTTATTCTTATTTGCAGCTGGAGTTAGGTATGGAGGTTCGGGG TGGAATGGTATTGTGGATTTGACCTTCGCAGTCCTTGCACAGTTGATCTTCCTGCTGCATTTACTTGCATCTTTCCCTTG TCAATATTAATGGATAAAAGCCTGTTTAACTTTCACCTGAATAATTATGGTGATATTGAGTAATTTTTTCTGGTTATTTA CATAAGAAAACTTTAACTGATTATTTGGAAAGCTATTACTATTCTAGTTGATTGAAAATGGTAAATGTGATTATGGTGAC AATTCTCTCTCTGTTACTCAACCCTAGTATACTTATTTTATGCACCATGCTTTTGATTTTCACTCATTCATTCTTCTCCT TATCAATTAGCATTATAGCACTGCCAGTTTAAAAAATGTGCATAATAATTGATAATGTCAGTCAGGTAGCTGTTTAGTGG ACCTGCAACTTGTGAATACTTGTGTTGTCAATTATATTTTTAAACTCAAGAAGTGTAATTGTCAAATTTTCCAGATAGTG CTTGGGATAAAACTAGGAATGAATCCACAAGAGGCAATATCAAAAGTGAAAACACTATCTGATGTTGAAGGTTTATGCAT ATCATTTGCCAATAGTCGTAACTCCTCTGATCCTGTCCTGGCTGTCAAGGTAATTTTAGCTGGTATGATGCCATCCTCAA AATTAGCTTTGTCAACAAAGCACATGATATGCTTGTGAAATTGATTATATAATTTGTTTAGACTTGTTTTTGTCTTTCAC ACATAAATCTTAATCCTTTTCATGTTTAAATTTATAACTTTCTTTTGCGTGCAGGAGTTTTTGAAGGAAGAACCTTATAC AGCTGATGAAATTGAAGAAATTACTGGGGAAAACTTGACCTCATCTTTTAGCAGTAATCCAGCTTATTTGGATGTCATAA AAGTAGCTAAGCACTACAAGTTACATCAGGTACCTTTTAAGGCCCCATTAGCGAAGTTACTTTTATCCCATTAGTATAGC CATGTCAATATCAGAATCAACTTGTTTGTCAGTACTTTGCTTCAGCTACTTACAATTTCAAATGGTGTTAGTTATACTTG AAGGTTCTGGATTTCTGTAACTGATGGGATAGTATAGTATTTATTCTATAGATTGCATATAAGTCACAGTAGTAGAGTTA TTTCTAGTCCTATTTGCATGACCATTTTAGGATCTAAATATGCTTAACTTTTTGTTTGGCCCTTTGCTTCAGAAACTTCT AGTTTTTAATGACAAACTAGTTGTGTCTTTGAATTGCATTTAGGATTATCTAAAGGGCTTCACGCAGGACTTATTTCTTG GATTGTATTATGGCTTTGGTGTTGCATGGTGCTACTCCCAATATGGTTCATCATTAGAATAGATATGATTCATGATAGGA CATTATGACACCATTTAATCTATGTAGCTGAACTCATCTAATGGGGAAAATGCTTTGGTTGTTAATGGTGGTGGTCGCAG TGCTACCTCCTGCAACTACTTCTCATTGCCTGTAATGGCTAACATCTATCCTTTTAATATGTTGCTACTTAATTTTGGTT CATATTTTTTTTTCCAGAGAGCTGCACACGTGTACTCTGAAGCCAAAAGGGTGCACGCTTTCAAGGATACTGTATCATCA GAACTAAGGTGATTTTTTTCTTAAGGGTAATATCATGAATGCTCTTTCATTTTTATGTGATTTTGGAGACATTTATAGAC TGGCTAAAAGGCTAGAGCTTGATAAATTTGAGAAGAATTGGTTAAGGATATGTATAAAGATTAAAGTATTCTTGTTCTGC ATCCTGCGATTCTACATAGGGCCTAGCTGCAATCACTATTGGTGTATGAATTTGTGAATATAAACTAAAGGAGGACCACG TTGAATATATTCTAAATTTCTAATATAGTAATATGTATCTTAGTAGATAAAAGGGTTGAGGTTTGATATTTTTGGCATTG TTAGTTTAACCGAAATATGTCTTCAGGGTTCATCTTATCAGTTTCCATATTTCGTGACCCTCTCTTAGGTGATCAGCATG TTTCTTGGATTTTAACTGTTAATTACTGTTTCAGTGATGAGGAGAAGCTAAAGAACCTTGGTGATCTTATGAATGAGAGT CATCATAGCTGCAGTGTTTTATATGAATGCAGGTAAATGATATGCACGGCCTTTTTATTTGAATAACATTTTTTCTCTGA AATAAGACTTGTCCAGCCTACTTGACACTTTAGGTTTCGGAATGCATTACATTATTAAAAAAATTGCACTTTCTTAAGTA TTAGATTCTCTTTAGATGGGATGTCCCTTTGTACGGGATGATTTTCAAATCAAATGACAAAATGAAAAGTACTGCTTGTA CAATGTAATCTCCTTTTTCAGAACATAAAGATAAAGTTGTTATTTGTGGAATCAGCTGTCCAGAGTTGGAAGAACTCGTA AATATTTCTCGTGACAATGGTGCTCTTGGGGCGAGGCTTACTGGAGCTGGATGGGGAGGTTGTGCTGTTGCCTTGGTGAA AGAAGACATTGTTCCTCAATTTATCCTTACTTTGAAGGTTTGCTATCATAAATTTGCAATCCTAATGAACATTAGAAATC TAGAATTAAGTTAATCAATTCTATATCCATTTCAGGAACGTTTCTACCAAGCAAGAATTGACAAGGGCCTGATCAAGGAG AACAATGTCGACCTCTATGTATTTGCTTCTAAGCCATCGAGTGGTGCTGCCATTTTAAAGTTTTAGAATCATTAGCTTGA CCAACTCCACTCTTAATGGCTGAGAAAGTGCAGGTTGCCATATGCAAACTCTGATGGAATAAGATTAAAATGTTACCATT ATTGTCAATTAGTTGCTTCTGGTATGCTTACCAATTACATTGACCTAAATGAATAATGACTATCTTGAACATTAGTAAGT CACCTTTCGTAGTGGTCAAATGATGTTCTTACCCAAAAAAATGTTTTGTATTTATTTAAAATTGGCCTTTTTTTGGTGCA ATATGGTGAAATTGTATGTACATAATTCACGAATAGGAACTTCAATGAAAATTGTAAGTCATTAATTAAAGGCATTATTG ATACCCACCTACCCTTGAGATCATGTACATCAGAGAGCTGAGGGCCCAATGGATCAAATCCAGGTCCAAGAGCTGAAGAG TTCTAAGCAAAAAACAATGGCCACACATAAGCTTCATCTCATTTAAATGTAAAAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAAACACGAAGAGCTTCCAGTCCCTGTTTTCGAAACGCTGGAACCTGTATACGGCGGTGGTTCTGAACTGGAAGA AGCTCAGCTTCGTTACGATAATTTGAAGTCTAAATTTCTCAGCATCTTCGGTCACAATCCTCAACTCATGGCTCGTTCTC CTGGGAGAGTGAACTTGATCGGGGAACACATTGATTATGAAGGCTATTCGGTGTTACCTATGGCAATTCGGCAAGACACG ATCGTGGCCATTCGGAAAAACGAAGATCAAAATGTTCTTAGGATTGCTAATGTTAATGATCAAGCTTATGCTACTTGTAC TTATCCTGCTGATCCTAACCAGGAGCTTGACTTGAAGAATCACAAATGGGGCCACTACTTTATTTGTGGGTATAAAGGCT TTCATGATTATGCGAAATCGAAAGGAGTTGATGTTGGTCCACCGGTTGGGCTTGATGTCCTTGTTGATGGAACAGTTCCC ACAGGTTCTGGACTATCGAGCTCTGCAGCATTTGTTTGTTCTTCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTT TCCAAAGAAAGAAGTTGCACAACTTACATGTGTGTGTGAACGGCACATTGGTACACAGTCTGGGGGGATGGATCAGGCAA TCTCTGTCATGGGAAAAGCTGGGTTCGCTGAGCTGATTGATTTCAACCCAATCCGTGCAACAGATGTGAAACTTCCTGCT GGTGGAACTTTTGTGATTGCCCATTCTTTGGCAGAGTCTCAGAAGGCTGTTACCGCTGCTACAAATTATAATAATAGGGT TCTTGAATGCCATTTGGCTTCTATAGTGCTTGGGATAAAACTAGGAATGAATCCACAAGAGGCAATATCAAAAGTGAAAA CACTATCTGATGTTGAAGGTTTATGCATATCATTTGCCAATAGTCGTAACTCCTCTGATCCTGTCCTGGCTGTCAAGGAG TTTTTGAAGGAAGAACCTTATACAGCTGATGAAATTGAAGAAATTACTGGGGAAAACTTGACCTCATCTTTTAGCAGTAA TCCAGCTTATTTGGATGTCATAAAAGTAGCTAAGCACTACAAGTTACATCAGAGAGCTGCACACGTGTACTCTGAAGCCA AAAGGGTGCACGCTTTCAAGGATACTGTATCATCAGAACTAAGTGATGAGGAGAAGCTAAAGAACCTTGGTGATCTTATG AATGAGAGTCATCATAGCTGCAGTGTTTTATATGAATGCAGCTGTCCAGAGTTGGAAGAACTCGTAAATATTTCTCGTGA CAATGGTGCTCTTGGGGCGAGGCTTACTGGAGCTGGATGGGGAGGTTGTGCTGTTGCCTTGGTGAAAGAAGACATTGTTC CTCAATTTATCCTTACTTTGAAGGAACGTTTCTACCAAGCAAGAATTGACAAGGGCCTGATCAAGGAGAACAATGTCGAC CTCTATGTATTTGCTTCTAAGCCATCGAGTGGTGCTGCCATTTTAAAGTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKHEELPVPVFETLEPVYGGGSELEEAQLRYDNLKSKFLSIFGHNPQLMARSPGRVNLIGEHIDYEGYSVLPMAIRQDT IVAIRKNEDQNVLRIANVNDQAYATCTYPADPNQELDLKNHKWGHYFICGYKGFHDYAKSKGVDVGPPVGLDVLVDGTVP TGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEVAQLTCVCERHIGTQSGGMDQAISVMGKAGFAELIDFNPIRATDVKLPA GGTFVIAHSLAESQKAVTAATNYNNRVLECHLASIVLGIKLGMNPQEAISKVKTLSDVEGLCISFANSRNSSDPVLAVKE FLKEEPYTADEIEEITGENLTSSFSSNPAYLDVIKVAKHYKLHQRAAHVYSEAKRVHAFKDTVSSELSDEEKLKNLGDLM NESHHSCSVLYECSCPELEELVNISRDNGALGARLTGAGWGGCAVALVKEDIVPQFILTLKERFYQARIDKGLIKENNVD LYVFASKPSSGAAILKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10457:SF7
11 495 485 1.5E-216 –
PANTHER
PTHR10457
11 495 485 1.5E-216 –
PIRSF
PIRSF000530
23 497 475 2.0E-138
IPR006206
SUPERFAMILY
SSF54211
26 240 215 6.22E-58
IPR020568
TIGRFAM
TIGR00131
34 471 438 1.5E-90
IPR000705
Gene3D
G3DSA:3.30.230.10
36 494 459 1.3E-156
IPR014721
Pfam
PF10509
38 86 49 3.8E-22
IPR019539
PRINTS
PR00959
53 77 25 4.0E-40 –
PRINTS
PR00473
55 73 19 1.9E-19
IPR000705
ProSitePatterns
PS00106
55 66 12 -
IPR019741
PRINTS
PR00473
150 168 19 1.9E-19
IPR000705
Pfam
PF00288
152 218 67 1.0E-14
IPR006204
PRINTS
PR00959
157 179 23 4.0E-40 –
ProSitePatterns
PS00627
159 170 12 -
IPR006203
PRINTS
PR00959
199 218 20 4.0E-40 –
Gene3D
G3DSA:3.30.70.3170
241 489 249 1.3E-156 –
SUPERFAMILY
SSF55060
243 472 230 3.06E-40
IPR036554
Gene3D
G3DSA:3.30.70.890
259 414 156 1.3E-156
IPR036554
PRINTS
PR00473
364 378 15 1.9E-19
IPR000705
Pfam
PF08544
391 465 75 2.4E-14
IPR013750
PRINTS
PR00959
432 449 18 4.0E-40 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004335
Molecular function Galactokinase activity Catalysis of the reaction: D-galactose + ATP = alpha-D-galactose 1-phosphate + ADP + 2 H(+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005534
Molecular function Galactose binding Interacting selectively and non-covalently with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006012
Biological process Galactose metabolic process The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
Subterm of
GO:0016301
Molecular function Kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
Subterm of
GO:0016773
Molecular function Phosphotransferase activity, alcohol group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
Subterm of
GO:0046835
Biological process Carbohydrate phosphorylation The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0260600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…