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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001680
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 837 results. Now displaying 3 of 17 with 50 rows per page. This search has taken 6.208s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1929090.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] gi|356507762|ref|XP_003522633.1| chr1 22844356 22853865 +
4 domain predictions
1 GO term
Lj1g3v1929090.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] gi|356507764|ref|XP_003522634.1| chr1 22844356 22853865 +
4 domain predictions
1 GO term
Lj1g3v2065470.1
n.a. n.a. chr1 24394140 24395881 +
4 domain predictions
1 GO term
Lj1g3v2065480.1
n.a. PREDICTED: lissencephaly-1 homolog [Glycine max] gi|356518336|ref|XP_003527835.1| chr1 24394292 24396488 -
4 domain predictions
1 GO term
Lj1g3v2124820.1
n.a. WD-40 repeat protein [Medicago truncatula] gi|357477601|ref|XP_003609086.1| chr1 25398286 25404713 -
2 domain predictions
1 GO term
Lj1g3v2280620.1
n.a. PREDICTED: WD repeat-containing protein DWA2-like [Glycine max] gi|356508796|ref|XP_003523140.1| chr1 26769861 26774991 +
3 domain predictions
1 GO term
Lj1g3v2360050.1
n.a. nucleotide binding protein [Cucumis melo subsp]. melo] gi|307135925|gb|ADN33787.1| chr1 27698110 27709551 -
2 domain predictions
1 GO term
Lj1g3v2442920.1
n.a. PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] gi|356530199|ref|XP_003533671.1| chr1 28476375 28491751 -
2 domain predictions
1 GO term
Lj1g3v2442920.2
n.a. PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] gi|356530199|ref|XP_003533671.1| chr1 28476375 28491751 -
2 domain predictions
1 GO term
Lj1g3v2442920.3
n.a. PREDICTED: regulatory-associated protein of TOR 1-like isoform X2 [Cicer arietinum] gi|502104405|ref|XP_004492529.1| chr1 28477343 28480199 -
2 domain predictions
1 GO term
Lj1g3v2580890.1
n.a. PREDICTED: transducin beta-like protein 2-like [Cicer arietinum] gi|502104745|ref|XP_004492634.1| chr1 29595927 29606228 +
4 domain predictions
1 GO term
Lj1g3v3171140.1
n.a. Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508713121|gb|EOY05018.1| chr1 35944961 35951738 -
3 domain predictions
1 GO term
Lj1g3v3407660.1
n.a. G protein beta subunit [Pisum sativum] gi|5733806|gb|AAD49742.1|AF170921_1 chr1 39381359 39385749 -
4 domain predictions
1 GO term
Lj1g3v3458820.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum] gi|502180523|ref|XP_004516656.1| chr1 40180102 40184762 +
4 domain predictions
1 GO term
Lj1g3v3458830.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357505499|ref|XP_003623038.1| chr1 40182585 40184947 +
2 domain predictions
1 GO term
Lj1g3v3529510.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum] gi|502103542|ref|XP_004492306.1| chr1 40491135 40497012 -
4 domain predictions
1 GO term
Lj1g3v3646460.1
n.a. PREDICTED: WD repeat-containing protein 82-like [Cicer arietinum] gi|502107731|ref|XP_004493359.1| chr1 42102304 42115548 +
4 domain predictions
1 GO term
Lj1g3v3702650.1
n.a. PREDICTED: protein tipD-like [Cicer arietinum] gi|502133650|ref|XP_004501842.1| chr1 42629684 42632986 +
4 domain predictions
1 GO term
Lj1g3v3847220.1
n.a. PREDICTED: WD repeat domain-containing protein 83-like [Glycine max] gi|356525570|ref|XP_003531397.1| chr1 44176115 44177189 +
2 domain predictions
1 GO term
Lj1g3v3943610.1
n.a. PREDICTED: WD repeat-containing protein LWD1-like [Cicer arietinum] gi|502106978|ref|XP_004493117.1| chr1 46003730 46006084 -
4 domain predictions
1 GO term
Lj1g3v3975960.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform 1 [Glycine max] gi|356571748|ref|XP_003554035.1| chr1 47126108 47129879 +
4 domain predictions
1 GO term
Lj1g3v4079420.1
n.a. PREDICTED: aladin-like [Cicer arietinum] gi|502107581|ref|XP_004493309.1| chr1 48098677 48105495 -
2 domain predictions
1 GO term
Lj1g3v4079420.2
n.a. PREDICTED: aladin-like [Cicer arietinum] gi|502107581|ref|XP_004493309.1| chr1 48098677 48107006 -
3 domain predictions
1 GO term
Lj1g3v4404380.1
n.a. PREDICTED: autophagy-related protein 18g-like isoform X2 [Cicer arietinum] gi|502118016|ref|XP_004496059.1| chr1 51341725 51347545 -
3 domain predictions
1 GO term
Lj1g3v4528470.1
n.a. PREDICTED: WD repeat-containing protein 70-like [Glycine max] gi|356572299|ref|XP_003554306.1| chr1 53372148 53375578 +
4 domain predictions
1 GO term
Lj1g3v4528630.1
n.a. Activating molecule in BECN1-regulated autophagy protein [Medicago truncatula] gi|357510311|ref|XP_003625444.1| chr1 53442721 53450580 -
4 domain predictions
1 GO term
Lj1g3v4579450.2
n.a. PREDICTED: dystrophia myotonica WD repeat-containing protein-like isoform X1 [Cicer arietinum] gi|502111144|ref|XP_004493967.1| chr1 54608105 54613392 +
2 domain predictions
1 GO term
Lj1g3v4668250.1
n.a. PREDICTED: WD repeat-containing protein 3-like [Glycine max] gi|356505281|ref|XP_003521420.1| chr1 55403784 55411705 +
4 domain predictions
1 GO term
Lj1g3v4717280.1
n.a. PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Cicer arietinum] gi|502111819|ref|XP_004494174.1| chr1 56238369 56244242 -
4 domain predictions
1 GO term
Lj1g3v4719640.1
n.a. PREDICTED: WD repeat-containing protein LWD1-like [Fragaria vesca subsp]. vesca] gi|470135453|ref|XP_004303529.1| chr1 56363407 56365347 -
4 domain predictions
1 GO term
Lj1g3v4719650.1
n.a. PREDICTED: WD repeat-containing protein LWD1-like [Fragaria vesca subsp]. vesca] gi|470135453|ref|XP_004303529.1| chr1 56364086 56365898 -
4 domain predictions
1 GO term
Lj1g3v4752950.1
n.a. PREDICTED: WD repeat-containing protein 74-like [Glycine max] gi|356560339|ref|XP_003548450.1| chr1 56889416 56896738 +
3 domain predictions
1 GO term
Lj1g3v4753210.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum] gi|502112266|ref|XP_004494277.1| chr1 56964677 56966981 -
4 domain predictions
1 GO term
Lj1g3v4819960.1
n.a. Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao] gi|508784969|gb|EOY32225.1| chr1 58133907 58148993 -
3 domain predictions
1 GO term
Lj1g3v4898010.1
n.a. PREDICTED: WD repeat-containing protein 89 homolog [Glycine max] gi|356505570|ref|XP_003521563.1| chr1 59380659 59383188 +
3 domain predictions
1 GO term
Lj1g3v4898010.2
n.a. PREDICTED: WD repeat-containing protein 89 homolog [Glycine max] gi|356505570|ref|XP_003521563.1| chr1 59380759 59383188 +
4 domain predictions
1 GO term
Lj1g3v4912170.1
n.a. PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max] gi|356505548|ref|XP_003521552.1| chr1 59447690 59450045 -
3 domain predictions
1 GO term
Lj1g3v4955470.1
n.a. PREDICTED: WD repeat-containing protein 48-like isoform X1 [Cicer arietinum] gi|502113479|ref|XP_004494664.1| chr1 60370126 60380409 -
4 domain predictions
1 GO term
Lj1g3v5010650.1
n.a. PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Cicer arietinum] gi|502077326|ref|XP_004485620.1| chr1 60905649 60907910 -
4 domain predictions
1 GO term
Lj2g3v0690150.1
n.a. PREDICTED: 66 kDa stress protein-like [Glycine max] gi|356527884|ref|XP_003532536.1| chr2 10944826 10949537 +
4 domain predictions
1 GO term
Lj2g3v0878940.1
n.a. PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Glycine max] gi|356497575|ref|XP_003517635.1| chr2 13503623 13511160 -
4 domain predictions
1 GO term
Lj2g3v0914420.1
n.a. PREDICTED: WD repeat-containing protein 36-like [Glycine max] gi|356527435|ref|XP_003532316.1| chr2 14212626 14221773 +
4 domain predictions
1 GO term
Lj2g3v0915090.1
n.a. PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Glycine max] gi|356573375|ref|XP_003554837.1| chr2 14451259 14470299 +
4 domain predictions
1 GO term
Lj2g3v0934150.1
n.a. PREDICTED: denticleless protein homolog [Cicer arietinum] gi|502090468|ref|XP_004489238.1| chr2 14976478 14980734 -
4 domain predictions
1 GO term
Lj2g3v0934150.2
n.a. Coatomer protein complex subunit alpha [Medicago truncatula] gi|357495733|ref|XP_003618155.1| chr2 14977133 14979412 -
4 domain predictions
1 GO term
Lj2g3v1016630.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Glycine max] gi|356527704|ref|XP_003532448.1| chr2 15707516 15711697 -
4 domain predictions
1 GO term
Lj2g3v1034670.2
n.a. PREDICTED: pleiotropic regulator 1-like [Glycine max] gi|356550956|ref|XP_003543846.1| chr2 16571967 16578957 -
4 domain predictions
1 GO term
Lj2g3v1079640.1
n.a. PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max] gi|356551165|ref|XP_003543948.1| chr2 17604277 17609335 +
4 domain predictions
1 GO term
Lj2g3v1368200.1
n.a. PREDICTED: probable cytosolic iron-sulfur protein assembly protein 1-like [Cicer arietinum] gi|502141265|ref|XP_004504504.1| chr2 21518237 21520189 +
4 domain predictions
1 GO term
Lj2g3v1389300.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum] gi|502103542|ref|XP_004492306.1| chr2 21940575 21948680 -
4 domain predictions
1 GO term