Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001965
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 253 results. Now displaying 4 of 6 with 50 rows per page. This search has taken 6.160s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. Methyl-CpG-binding domain-containing protein 9; TAIR: AT3G01460.1 methyl-CPG-binding domain 9; Swiss-Prot: sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9; TrEMBL-Plants: tr|I1M022|I1M022_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0248100 LjG1.1_chr2 71364106 71383994 -
n.a. Nipped-B-like protein; TAIR: AT5G15540.1 PHD finger family protein; Swiss-Prot: sp|F5HSE3|NIPLA_DANRE Nipped-B-like protein A; TrEMBL-Plants: tr|K7LXL8|K7LXL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0265500 LjG1.1_chr2 73483522 73504530 -
n.a. PHD finger protein family; TAIR: AT5G22260.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9FMS5|MS1_ARATH PHD finger protein MALE STERILITY 1; TrEMBL-Plants: tr|A0A151QSK5|A0A151QSK5_CAJCA PHD finger protein family; Found in the gene: LotjaGi2g1v0303400 LjG1.1_chr2 77719325 77721796 +
n.a. E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|G7JQG1|G7JQG1_MEDTR E3 SUMO-protein ligase SIZ1; Found in the gene: LotjaGi2g1v0362700 LjG1.1_chr2 85997006 86014478 -
n.a. Zinc finger CCCH domain protein; TAIR: AT3G51120.1 zinc finger CCCH domain-containing protein 44; Swiss-Prot: sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr|G7KGD4|G7KGD4_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0384000 LjG1.1_chr2 88026227 88032863 +
n.a. Zinc finger CCCH domain protein; TAIR: AT2G18090.1 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; Swiss-Prot: sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr|A0A1J7IDW5|A0A1J7IDW5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0384100 LjG1.1_chr2 88041105 88046157 +
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14686|KMT2D_HUMAN Histone-lysine N-methyltransferase 2D; TrEMBL-Plants: tr|K7LN09|K7LN09_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414100_LC LjG1.1_chr2 91160675 91168308 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14686|KMT2D_HUMAN Histone-lysine N-methyltransferase 2D; TrEMBL-Plants: tr|K7LN09|K7LN09_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414100_LC LjG1.1_chr2 91160675 91168308 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.3 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q6PDK2|KMT2D_MOUSE Histone-lysine N-methyltransferase 2D; TrEMBL-Plants: tr|A0A1J7H449|A0A1J7H449_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414100_LC LjG1.1_chr2 91160884 91166089 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14686|KMT2D_HUMAN Histone-lysine N-methyltransferase 2D; TrEMBL-Plants: tr|K7LN08|K7LN08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414200_LC LjG1.1_chr2 91169600 91177260 -
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93045415 93061638 -
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93046189 93061632 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT5G16680.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B; TrEMBL-Plants: tr|I1LFW6|I1LFW6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0451600 LjG1.1_chr2 94475852 94485530 -
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.3 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7CG62|V7CG62_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0455500_LC LjG1.1_chr2 94853977 94863101 -
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.3 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|I1LFT6|I1LFT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455500_LC LjG1.1_chr2 94854138 94862953 -
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.3 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|I1LFT6|I1LFT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455500_LC LjG1.1_chr2 94854138 94862953 -
n.a. PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|I3T930|I3T930_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0029200 LjG1.1_chr3 3200282 3205218 -
n.a. Protein strawberry notch like 1; TAIR: AT1G79350.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4IF36|FGT1_ARATH Protein FORGETTER 1; TrEMBL-Plants: tr|A0A072TQ60|A0A072TQ60_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0034000 LjG1.1_chr3 3587557 3606889 +
n.a. Protein strawberry notch like 1; TAIR: AT1G79350.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4IF36|FGT1_ARATH Protein FORGETTER 1; TrEMBL-Plants: tr|A0A072TQ60|A0A072TQ60_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0034000 LjG1.1_chr3 3587662 3605896 +
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G14740.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O54826|AF10_MOUSE Protein AF-10; TrEMBL-Plants: tr|A0A1J7H9J1|A0A1J7H9J1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0038900 LjG1.1_chr3 4187644 4190729 -
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G14740.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|P55197|AF10_HUMAN Protein AF-10; TrEMBL-Plants: tr|A0A1J7H9J1|A0A1J7H9J1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0038900 LjG1.1_chr3 4188001 4190625 -
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4679554 4686427 -
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4683701 4685929 -
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4683774 4685904 -
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A0B2RYF3|A0A0B2RYF3_GLYSO BAH and coiled-coil domain-containing protein 1; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4683872 4685904 -
n.a. Protein strawberry notch like 1; TAIR: AT1G79350.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4IF36|FGT1_ARATH Protein FORGETTER 1; TrEMBL-Plants: tr|A0A072TQ60|A0A072TQ60_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0131700 LjG1.1_chr3 16501589 16528498 -
n.a. PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|K7KPZ4|K7KPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0134000_LC LjG1.1_chr3 17041530 17044480 -
n.a. PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|A0A176VP64|A0A176VP64_MARPO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147600_LC LjG1.1_chr3 19828766 19834189 +
n.a. PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|A0A176VP64|A0A176VP64_MARPO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147600_LC LjG1.1_chr3 19830929 19834289 +
n.a. PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|A0A176VP64|A0A176VP64_MARPO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147700_LC LjG1.1_chr3 19885213 19890418 +
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700 LjG1.1_chr3 21040727 21045527 -
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700 LjG1.1_chr3 21043283 21045325 -
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700 LjG1.1_chr3 21043308 21045325 -
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; TAIR: AT3G14980.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A072VAI1|A0A072VAI1_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0158900 LjG1.1_chr3 21698498 21708624 -
n.a. E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|A0A1J7HSK9|A0A1J7HSK9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0159600 LjG1.1_chr3 21765713 21778761 -
n.a. E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|A0A1J7HSK9|A0A1J7HSK9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0159600 LjG1.1_chr3 21766539 21778675 -
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT2G27980.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7BYM1|V7BYM1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0169800 LjG1.1_chr3 23142618 23149886 -
n.a. PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200 LjG1.1_chr3 30775476 30781650 -
n.a. PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|Q9FFF5|ALFL1_ARATH PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200 LjG1.1_chr3 30778400 30779418 -
n.a. Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800 LjG1.1_chr3 58173787 58183045 +
n.a. Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800 LjG1.1_chr3 58174033 58183045 +
n.a. Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800 LjG1.1_chr3 58175295 58182527 +
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr|A0A151SIL1|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900 LjG1.1_chr3 79460910 79470626 -
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433668 82437856 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433900 82437269 +
n.a. Nucleosome-remodeling factor subunit BPTF; TAIR: AT5G22760.1 PHD finger family protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A1J7GFU1|A0A1J7GFU1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481400 LjG1.1_chr3 89906343 89917116 +
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT2G27980.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A0L9V6F0|A0A0L9V6F0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483700 LjG1.1_chr3 90113337 90119103 +
n.a. Nucleosome-remodeling factor subunit; TAIR: AT5G12400.1 PHD-finger and DNA binding domain-containing protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A0B2PNJ8|A0A0B2PNJ8_GLYSO Nucleosome-remodeling factor subunit NURF301; Found in the gene: LotjaGi3g1v0534700 LjG1.1_chr3 95147987 95168379 +
n.a. Nucleosome-remodeling factor subunit; TAIR: AT5G12400.1 PHD-finger and DNA binding domain-containing protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|K7LNU7|K7LNU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0534700 LjG1.1_chr3 95148152 95168025 +
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B; TrEMBL-Plants: tr|A0A0S3SEH2|A0A0S3SEH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0539400 LjG1.1_chr3 95661596 95669355 +