Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0287800.3

Overview

Field Value
Gene ID LotjaGi3g1v0287800
Transcript ID LotjaGi3g1v0287800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:58175295..58182527) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGGAAGACCAGTGTTGAGGAATCTGGCGAAGGCGGAGTCGTGACCCGTAGAACTGCTACTAGAGGAAGTAGAGGTGG AATTGTTGATACGCCGAAGAAGCGAAATGGGAAGGGGGCGTCAATTGATGCTCAATTTGCTCCGGTATCGCCTGATCAAT CGGAAAGTAAGAAGAGGAAGAGGAAGAGGGAGGGTGAGGGCGACGGTGAGGGTGAGGGTGAGGGTGGGAGAAGGGTTGTT ACGAGAGCCATGGCTGTGAAAAAAGGGAGACGGGCGAAGAGTGAAGGGGCGGTGCTCAAGAGGCGGGTTTATTACAAGAA AGTGGTTTATGATGGGGGTGAATTTGAGGTTGGGGATGATGTTTATGTTAAGAGGAGGGAAGATGCTTCGTCTGACGATG AAGATCCCGAAGTGGAGGAGTGCCGGTTGTGTTTTAGTTCCGGTGAGGAGACCATGCTTGAGTGTGATGGTTGTTTGGGC GGGTTTCATTTGAAATGCTTGACGCCGCCGTTGAGTGATGTTCCTGAAGGGGATTGGACGTGTGGGTTCTGCGAGGCTCG TAAGATGGGTAAGGAGGTTGATTTCCCAAAGCCGCCGGAGGGTAAGAGACTAGTCAGGACAATGAGGCAGAAGCTTCTCT CCAGTGATTTATGGGCTGCTAGAATTGAGAGGTATGACATGTCTTTTCTTGATTAATCAGGTTAGCTTTTGCTGCTTTTT CATTTCACTGAATTCTAATTATGTTGACATCTTTGGTTTAATGTGGCAGCATATGGAAAGAAGTAGATGGCAAGTACTGG TGCCGGGTGCGGTGGTATACAATCCCAGAAGAGACTTCTGTTGGCCGACAACCACATAACCTGAGCAGGGAGCTATATCG AGCCAATGATTTTGCCGACATTGAGGTACTGGATGATAACTGTTATGGTTGTTACTTGCTGATAGTTTCATGAATGGAAA TGCTCAAGCTGTACTTTCTATCTATCAACCAATGAATCAATCATGTTTAGTAACCGTACTGAGCATGTTTTAGTGGTAAT TCTTGAAATCTTTTGGTGCATTTAGATGGCTCGAGTTCTCTTTTCCATCCTCAATTCAACTATTCAAGTTTAGTTCTTAT TGTGGAAATGAAATCTCAAACCATCTAGATGACTAGATGCAATGAAACATCCTAGAATTAGACTTCAATTGATTAGATAA TAGCTATCAATATTATGGACTGATTGCTTATTTTGATAGATTGATTAGATTCTTGATCTTGATTAGTTTAGCTTATCTAG AATCATGTATCTACAAACAGGTCTATGTTTATTTACCTTTATGAATCTCATGGTTTTACACCCTAGGGTTGTTTGAAATG CTTCTGATCATAAGAAATGGAACCTCCATTTTCTTGCTAAGCCATTAATTTAGATTATAATGGGCAATCGCACATCCATG TTAATTTAAGCAGTCATACAAATTTAGACTATCAAGCTTCATTGTGCTCCTAGAAGTTTATTTATCAATTGTATTCACTA TAATTAGATACATAATAAAGGAGTTTCAAAGTCATAAATATGAAACAGTCAGTGCTTCCAACACCTCACCTACATTATAC AATAGTAATTAAATGGTGAAACCATATCCTAAAATTTAATCTAACTAGGAGTACTATATATCATTCCTATCTCTAGCATA TCTATAGCACCAGATATAATGTTTAATATTGTGGGAACTGATCGCCCTTTAATTCATCTCATCGTTCCTTTGTTAACTTA CTGCAGATAGAATCTGTCCTTAGACATTGCTATGTCATGACCCCTAAAGAGTATACTAAAGCTAGCAATGAGGGAGATGA TGTTTTCTTATGTGAATATGAATATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGG TAATCATGCCAGAAGACTAGAAAAAAATAAGTATTTTTGTTGTTATTAAAAGAGTTGATCATTTAGTAGTGCTAGTATTG ATGGGTTTATGGTTCTTACATGGTAGAGTGGTGAAGCAACTGATAGTGATGAAGACTGGAGTCATGACAAGGAATCATAC TCTGATACAGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAACGGACTATCTCAGCCATCAACAAGCCATCAGTT AGCTGCAGTATGGATATTATTATTCACTTCATATTTTTCATTTTTCTGGGTATTTATGATTTCCTATAAAAATAAATGTC TTAATGATACAGAATCTGCACAAGGGACGGTTTTTCGGACTTCAGAAGATAGGAACAAAAATAATTCCACAGCATATAAG GTCTCACAAACAGACTGATCTTGAGAGGGCAAAGGCCACACTGTTGTTAGCATCATTGCCGAAATCCTCACCTTGTAGAA ATAAGTATGTTGAAGTTTGAAAATATTTGTTTATTATTTTATCTTTCTCTATGAAGCTACTGAACATTGCATGCTTTTAT TTAGAGAAATGGAGGAGATAACTACATTTATTAAAGGTGCTATTTCTGATGATCAATGTCTGGGGCGTTGCCTTTACATT CATGGTGTTCCTGGAACTGGCAAGGTACTATCTTTTTATGTCTAGAACTAAATATTTTGTTTCTTTAGTTCAATATCCAG TGGGGCATTAACTTAGCCATTATAGAGCAAGGGTAGGGTTGGTAGAGCTTGTTCACAGCTTATTTGAGCTTATCTTAAAG TATAAGCATTTCTGTGGGTGTTTAAGTGACCATAAGAAAATAACTTCTAACTACGACATAAGCTATTTTGAACTTATTCT AATAAGCTATTTTTACCGAAGCTTATAGAAATAAGCTGCGCTCAGCTAATGCAGAGCTTTTACCAGAAACCCATCTTTGA ACCCCATATCCCGAAATCTCATCCTTTTTATTTTAAATTTGGATCAGAATTTCACATTTCCTGTTCGACAAACCAAGACC TTAAGTTCTTGGATGCAAAAATTTTGTATAAGCTCTTCTCCATGTGTATACCCAAACAAATAGCTTATGAAATTGAAGCG CTTCTGACTTAACACAAGCTCTTATATGATAAGCGCTCACTGAATAAGTGCGTAGAAAAGCTGTTTGCACAAACGAGGGC CAAGTCTTGTTTTATAAGTCATTTTACCCATGTGTAACTGCAGACAATGAGTGTACTAGCGGTGATGAGGAGTTTGAGGG CAGAAGTTGATGCAGGAAATATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATT TATAGGGTAAAGTTCACAAATTCTAGTGTTTTTGGCTTTGTACGACTATATTCATCTTATAGTTCTGAATCTGATATTTT TTCAGGTCATATATGAGGCACTGAATGGACATAGAGTCAGCTGGAAAAAGGCTCTCCACGTGCTAAATGAGAGGTTTGTA GAAGGAAAGAGAACTGGGGAAGAGGCTGATAGGCCATGTATTTTGCTAATTGATGAACTTGATCTTCTCGTAACCAGAAA CCAGTCGGTAACCTTCAAATCCTGTAACAAGAAACTTGTCATTAGGTCAACAATTTTTAACATATAAAATCATGTTGCCT TAAACTTTTCTTTTATCACAGGTTTTGTACAACATTCTTGACTGGCCTACGAAGCCACATTCCAAGCTAATTGTGATAGG TAAAAGAAAACGCTACTTTAAGTATTATGATCTTCCATCTTGGAAGAGGTAATTTAAAATAGTTGGAAAACAATAATCCA TATGATTATAACAACTGTGATGCCTTTGTGGACGGAGGAATCTTATGGTTTCGCAATAATGTAATGAATTCAGGGATAGC AAATACCATGGATCTTCCAGAGAAGTTGCTTCCTCGTATATCAAGCCGAATGGGCATACATAGGCTTTGCTTTAGCCCAT ATAATTATCAGCAGCTTCAAGAAATCATTTCTAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTATAGAGTTT GCTTCAAGAAAGGTTAGTCACAATTTCATTATAAATATTGTTTTCCTTTAATCTTTTAGACATGATGGACCCTTGTTTTG CTACAACAGTTTATTGGTTTACATCTAAAATGGTCTTCAATTTTTCAGGTTGCAGCCATCTCAGGAGATGCACGTCGTGC TTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTACCGTACAAAGAAGCTAGTTTCAAGTTCTGATTCTTTTACTG CAGGTATACAAACATGCCTTACAGATTTTACATGTCATCACAGTAGGGTGGGTGATCACAAAATGTTTCCTAGTTTTTGT TAGAATATATTACATATTTTCCAAATGATATGTTACCTACTTAACATGTTATTTCTTCGCATTGCCTAGGATGTCAAGGA ATGTCTTTTTGGTAGTTGGTTGTCCTTTTACTGATGTACTTGCAATCAAAGTCTGAAAATTGAAGTTATCAGAGGCTTAC AATATACTTAAATGCTTGCTTTTGGTTTCTAGGCAATTAGGCATATCCTTCTACATTTTCATTCTTTAGTCACATTGATC ATTGATGATATATAAGAGAAATACTGAAATAGCATTCTGCCTGTTGATGTCTTACTTGGTTAGTAGTTGGATGATTGGTG TTTATTCATGTTGTACACACTGCATAAGGTAACAATCACTTCATCATGTATTATAGGCATAACAAATGATAAAAAAAAAC ATTTTTCCCTGGGCTCTGCTTAGAAACAGCATGTATACTGATTCCAATAAAATTATGAAAACCATGTGAACCAGAGTTCT TAGCCTTCCTTCCTCTAGACTTCTCTTTCTGTTGTTACCTATGTATGTAGGCTTGATAATGATCTAGGAATATGACATTG TTTAACCTTCTATCTTCTATCATGGAATAATTTAATTCCACGTTGTTAGCTCTATAATCTAAACTACAATCAGCATCAGT TGTATCCATGAATTCCTTCTGAGGTGGTACTTCTGTCCACTAATTTACTTACATTCTTTCGCTAGGGAAGGGACTTGTTG CAATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGAGTTAAAATTTGCAGCGCGCT GAATTTTTTTTTTTTGACAATTGAAGTTCCATTTTTTCGTGAATGCTAGATGATGCTTTAGACAATGAACCAAGTCATGA CTCGTAAATATAATAGTGACTATATTGCGTTTGATATTGTTACAAATGTTGCTGAACAAGATTTTAATTGAGGATTATAA CATTAACAAGATTTTATTCTGTTTTGGGTCCAGCTCCGGCTCCTCTAAAGTAAATACTCACTTTAGATGGTAAAGTAAGT CATCAGAAAGTCATAAACATTAATAGTGATTACCTACTTTGAAAAGTCAATAAAGCAACTCAATCAATGGTTGTGATGAC TTACTTTGCCCTCTAAAATGACCCTCTCACTTTGGAGGGCCAAATCCTTTTGTGGGACCAGTAACCATAGGACATATAAT AAATAGGTGAAGGGGGAAATCATTGTCATTACTCATTGCTCTCCATTATATATAAGCCAGATTTTCCGTGCGAAATCCAT GGAATCACTTAGGGGTATATTCATGACGTCATTCTTTCATTTTGAAGGTGATGAAACACTGTTCCAGAATTAGCAAAATT TTCCTGACAGCTATGGTGCACGAGCTATATAAAACTGGAATGGGAGAAACTACTTTTGAAAAGGTCAGCTTCCGAAGCTT CTTTCAGTTATTATATTCTCATTTTGCATTCAGGTCAATCAGAGTTCTTCACCTTCGAACTCCAGTCCTCAGCTTTTCAG TTGATTGCATTTATTACATGAAGTTTGCAGCTAACATGATTTTTCTTCTTGCATGCATTTTTTACCCAAAATGTTAGAAA ATCTTTTGATGATCTTAGGGGTTTTATATTCTGATGTTTACTTTCTACTTAAATAGCATTGGTTAGGCTTGAAGCTAATT GATCATTGTTTTGGCAGACGACAGAAAAAGGCTAATTTGTGCAGTCATTCTTATGTAAAGTTTTATTTGACAATGCAGTT GGCAATGGCAGTTTCACGTCTTTGTACCAGCAATGGAGAGGTGTTTCCCGGATATGATGCCCTCCTGCAAGTTGGGTAAG ACTACTAATGCATCTGAGATGATCTCTTCTTTCTACTCAAATAACATTAATATAAAACAATAATTTCAAGCTGCAGTGAA GTTGAAGTGTACGTGATCTGTTCTAATTACATATCTATTAAGCTGAAATGTCTTTATTCCTACTTTTTGCAGCTGCAAGC TAGGCGAGTGCAGAATTATTTTATGTGAAGCAGGGGCCAAGCACAGGCTGCAAAAATTGCAGCTCAATTTCCCAAGGTTA GTTCTCAATGCCCTTATCAGTTCTTCAGATGCTTCCATGGATACAAATAATGGGATATGAGTGGTGCCCTCTTTAAGTTG AATGAACAGAATAGTTTGCATTTTCCTTCAGTATTGAACTTAATTTGATTTTGCAATCCTTTGCATGTTAAGCCTTCAAT CTAGGAGAAGTCAATTTTTTCAAGTTTGCATGGTATTTTCTTTTGATCCAGTAGATTATTTTTTAGGTTAGTCACTAAAC TAGTTTTCCCACGTAAATCAATTTTTTTAAAATTAATGAATTGGTCTTGCCAGCCTTAAAATGCTCGATTTACTTAGCAC TGTGTATGATATAGAAAATTTAAACATTTAATGAGTCAATGATAAATAAATTAGTCCTTGTGTTTGTAAGGGAATTCGAG TTTATGAGTCAATGATAAATAAATTAGTCCTTGTGCATATGTGATCAGCAGCTTCCCCAGTCTGGGGAATAAGTTTGATA ATGAAAATGCAATTCTGGCTACCTCATAAGCTAACCTTTACAAATCTGGTCACCTCTTCTAACATGCCTAAAAGATCAAG ATCTGAAGGCAGTGGAAAGGAACATATATACCCAGCCCATTTTTCCCAGTATAGAATTTACGACCTGTACAATATTGTGA CAAGAGTATTTAACTATTTTCAAAAGCCTTGTAATCAAAGTTTCCGTTTGTTTATCCACACTTACAAGCTACATTTGGCT TGATTTCATTAGTTTGACTGGTTTCATTGATTCTACTTTTTGACAGCGATGATGTAGCCTTTTCGCTGAGAGACTGCAAA GATCTGCCTTGGTTGTCGAAGTATCTAATGTAG 

CDS sequence (LotjaGi3g1v0287800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGTGAAAAAAGGGAGACGGGCGAAGAGTGAAGGGGCGGTGCTCAAGAGGCGGGTTTATTACAAGAAAGTGGTTTA TGATGGGGGTGAATTTGAGGTTGGGGATGATGTTTATGTTAAGAGGAGGGAAGATGCTTCGTCTGACGATGAAGATCCCG AAGTGGAGGAGTGCCGGTTGTGTTTTAGTTCCGGTGAGGAGACCATGCTTGAGTGTGATGGTTGTTTGGGCGGGTTTCAT TTGAAATGCTTGACGCCGCCGTTGAGTGATGTTCCTGAAGGGGATTGGACGTGTGGGTTCTGCGAGGCTCGTAAGATGGG TAAGGAGGTTGATTTCCCAAAGCCGCCGGAGGGTAAGAGACTAGTCAGGACAATGAGGCAGAAGCTTCTCTCCAGTGATT TATGGGCTGCTAGAATTGAGAGCATATGGAAAGAAGTAGATGGCAAGTACTGGTGCCGGGTGCGGTGGTATACAATCCCA GAAGAGACTTCTGTTGGCCGACAACCACATAACCTGAGCAGGGAGCTATATCGAGCCAATGATTTTGCCGACATTGAGAT AGAATCTGTCCTTAGACATTGCTATGTCATGACCCCTAAAGAGTATACTAAAGCTAGCAATGAGGGAGATGATGTTTTCT TATGTGAATATGAATATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAGTGGTGAA GCAACTGATAGTGATGAAGACTGGAGTCATGACAAGGAATCATACTCTGATACAGATGAAGATGTTGAATATGAAGAGGA AAATATTAAAAACGGACTATCTCAGCCATCAACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGACGGTTTTTCGGAC TTCAGAAGATAGGAACAAAAATAATTCCACAGCATATAAGGTCTCACAAACAGACTGATCTTGAGAGGGCAAAGGCCACA CTGTTGTTAGCATCATTGCCGAAATCCTCACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGGTGC TATTTCTGATGATCAATGTCTGGGGCGTTGCCTTTACATTCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTAG CGGTGATGAGGAGTTTGAGGGCAGAAGTTGATGCAGGAAATATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAA TTGGCATCACCAGAGAATATTTATAGGGTCATATATGAGGCACTGAATGGACATAGAGTCAGCTGGAAAAAGGCTCTCCA CGTGCTAAATGAGAGGTTTGTAGAAGGAAAGAGAACTGGGGAAGAGGCTGATAGGCCATGTATTTTGCTAATTGATGAAC TTGATCTTCTCGTAACCAGAAACCAGTCGGTTTTGTACAACATTCTTGACTGGCCTACGAAGCCACATTCCAAGCTAATT GTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCTCGTATATCAAGCCGAATGGGCATACATAGGCT TTGCTTTAGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCTAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGC AAGCTATAGAGTTTGCTTCAAGAAAGGTTGCAGCCATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCA GCTGAAATAGCAGATTACCGTACAAAGAAGCTAGTTTCAAGTTCTGATTCTTTTACTGCAGGGAAGGGACTTGTTGCAAT GGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAACACTGTTCCAGAATTAGCA AAATTTTCCTGACAGCTATGGTGCACGAGCTATATAAAACTGGAATGGGAGAAACTACTTTTGAAAAGTTGGCAATGGCA GTTTCACGTCTTTGTACCAGCAATGGAGAGGTGTTTCCCGGATATGATGCCCTCCTGCAAGTTGGCTGCAAGCTAGGCGA GTGCAGAATTATTTTATGTGAAGCAGGGGCCAAGCACAGGCTGCAAAAATTGCAGCTCAATTTCCCAAGCGATGATGTAG CCTTTTCGCTGAGAGACTGCAAAGATCTGCCTTGGTTGTCGAAGTATCTAATGTAG 

Protein sequence (LotjaGi3g1v0287800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVKKGRRAKSEGAVLKRRVYYKKVVYDGGEFEVGDDVYVKRREDASSDDEDPEVEECRLCFSSGEETMLECDGCLGGFH LKCLTPPLSDVPEGDWTCGFCEARKMGKEVDFPKPPEGKRLVRTMRQKLLSSDLWAARIESIWKEVDGKYWCRVRWYTIP EETSVGRQPHNLSRELYRANDFADIEIESVLRHCYVMTPKEYTKASNEGDDVFLCEYEYDIHWHSFKRLADIDNERESGE ATDSDEDWSHDKESYSDTDEDVEYEEENIKNGLSQPSTSHQLAANLHKGRFFGLQKIGTKIIPQHIRSHKQTDLERAKAT LLLASLPKSSPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRAEVDAGNIKPYCFVEINGLK LASPENIYRVIYEALNGHRVSWKKALHVLNERFVEGKRTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLI VIGIANTMDLPEKLLPRISSRMGIHRLCFSPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRA AEIADYRTKKLVSSSDSFTAGKGLVAMADVEAAIQEMFQAPHIQVMKHCSRISKIFLTAMVHELYKTGMGETTFEKLAMA VSRLCTSNGEVFPGYDALLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYLM 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 17 706 690 1.4E-295
PANTHER 17 706 690 1.4E-295
SMART 30 230 201 2.2E-10
SUPERFAMILY 44 107 64 5.54E-15
Gene3D 45 117 73 7.6E-16
ProSiteProfiles 55 104 50 9.757
SMART 57 102 46 5.7E-8
Pfam 58 103 46 2.5E-9
ProSitePatterns 58 101 44 -
ProSiteProfiles 113 230 118 18.182
Pfam 137 227 91 1.0E-9
MobiDBLite 235 277 43 -
MobiDBLite 235 257 23 -
Gene3D 310 510 201 8.0E-60
SUPERFAMILY 324 576 253 4.13E-37
SMART 354 508 155 1.3E-6
Pfam 359 504 146 1.2E-19
Gene3D 512 597 86 6.2E-7
Pfam 532 565 34 8.7E-11

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0287800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…