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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006447
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 199 results. Now displaying 2 of 4 with 50 rows per page. This search has taken 5.744s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2518940.1
n.a. late elongated hypocotyl and circadian clock associated-1-like protein 1 [Glycine max] gi|351722167|ref|NP_001235187.1| chr3 30916662 30924199 +
2 domain predictions
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Lj3g3v2812210.1
n.a. PREDICTED: transcription activator GLK1-like [Glycine max] gi|356549890|ref|XP_003543323.1| chr3 34699271 34713063 -
2 domain predictions
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Lj3g3v2812210.2
n.a. PREDICTED: transcription activator GLK1-like [Glycine max] gi|356549890|ref|XP_003543323.1| chr3 34699271 34713063 -
2 domain predictions
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Lj3g3v3214340.1
n.a. PREDICTED: two-component response regulator ARR2-like isoform X1 [Cicer arietinum] gi|502148438|ref|XP_004507164.1| chr3 39702357 39705065 -
2 domain predictions
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Lj3g3v3235380.1
n.a. PREDICTED: two-component response regulator ARR2-like isoform X1 [Cicer arietinum] gi|502148438|ref|XP_004507164.1| chr3 39762253 39764912 +
2 domain predictions
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Lj4g3v0571920.1
n.a. PREDICTED: probable transcription factor RL9-like isoform X1 [Cicer arietinum] gi|502143010|ref|XP_004505182.1| chr4 9007079 9013349 +
2 domain predictions
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Lj4g3v0571920.2
n.a. PREDICTED: probable transcription factor RL9-like isoform X2 [Cicer arietinum] gi|502143012|ref|XP_004505183.1| chr4 9007079 9013349 +
2 domain predictions
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Lj4g3v0668260.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356556600|ref|XP_003546612.1| chr4 10972140 10973962 +
2 domain predictions
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Lj4g3v1154490.1
n.a. PREDICTED: two-component response regulator-like APRR2-like isoform X1 [Cicer arietinum] gi|502152594|ref|XP_004508999.1| chr4 17428155 17432250 -
2 domain predictions
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Lj4g3v1154490.2
n.a. PREDICTED: two-component response regulator-like APRR2-like isoform X1 [Cicer arietinum] gi|502152594|ref|XP_004508999.1| chr4 17428155 17436114 -
2 domain predictions
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Lj4g3v1221450.1
n.a. PREDICTED: transcription factor MYB1R1-like [Cicer arietinum] gi|502152469|ref|XP_004508939.1| chr4 18183125 18187711 +
2 domain predictions
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Lj4g3v1223630.1
n.a. PREDICTED: transcription factor MYB1R1-like [Cicer arietinum] gi|502152469|ref|XP_004508939.1| chr4 18237309 18241936 +
2 domain predictions
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Lj4g3v1585870.1
n.a. isoflavonoid regulator [Glycine max] gi|254679865|gb|ACT78579.1| chr4 23344920 23346288 +
2 domain predictions
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Lj4g3v1585870.2
n.a. isoflavonoid regulator [Glycine max] gi|254679865|gb|ACT78579.1| chr4 23344950 23346288 +
2 domain predictions
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Lj4g3v1787120.1
n.a. MYB transcription factor MYB109 [Glycine max] gi|351727817|ref|NP_001235894.1| chr4 25344658 25346283 +
2 domain predictions
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Lj4g3v1802450.1
n.a. Homeodomain-like superfamily protein [Theobroma cacao] gi|508783672|gb|EOY30928.1| chr4 25516741 25518413 +
2 domain predictions
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Lj4g3v1802450.2
n.a. Two-component response regulator ARR14 [Medicago truncatula] gi|357477845|ref|XP_003609208.1| chr4 25516741 25520165 +
2 domain predictions
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Lj4g3v2604770.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357518971|ref|XP_003629774.1| chr4 35363106 35369407 +
2 domain predictions
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Lj4g3v3016310.1
n.a. MYB transcription factor MYB127 [Glycine max] gi|351721742|ref|NP_001235940.1| chr4 40428392 40429929 -
2 domain predictions
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Lj5g3v0069820.1
n.a. PREDICTED: probable transcription factor KAN4-like [Glycine max] gi|356564221|ref|XP_003550354.1| chr5 343028 346945 +
2 domain predictions
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Lj5g3v0523200.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356562101|ref|XP_003549312.1| chr5 5499107 5503976 -
2 domain predictions
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Lj5g3v0554360.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR12-like [Glycine max] gi|356554201|ref|XP_003545437.1| chr5 6662293 6663851 -
2 domain predictions
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Lj5g3v0615930.1
n.a. MYB transcription factor MYB118 [Glycine max] gi|351720810|ref|NP_001235909.1| chr5 7967961 7972152 +
2 domain predictions
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Lj5g3v0615930.2
n.a. PREDICTED: transcription factor ASG4-like [Glycine max] gi|356545959|ref|XP_003541400.1| chr5 7967961 7973083 +
2 domain predictions
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Lj5g3v0659720.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356515054|ref|XP_003526216.1| chr5 9279481 9282099 +
2 domain predictions
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Lj5g3v0900910.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502122817|ref|XP_004497904.1| chr5 13428619 13432199 +
2 domain predictions
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Lj5g3v1697860.1
n.a. PREDICTED: myb family transcription factor APL-like [Cicer arietinum] gi|502118139|ref|XP_004496120.1| chr5 24448260 24451694 -
2 domain predictions
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Lj5g3v1774720.1
n.a. Two-component response regulator ARR14 [Medicago truncatula] gi|357488375|ref|XP_003614475.1| chr5 25244005 25246435 +
2 domain predictions
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Lj5g3v1988660.1
n.a. MYB transcription factor MYB148 [Glycine max] gi|110931796|gb|ABH02897.1| chr5 27904206 27908894 +
2 domain predictions
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Lj5g3v2241390.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357438793|ref|XP_003589673.1| chr5 32407199 32411612 -
2 domain predictions
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Lj6g3v0607190.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502129228|ref|XP_004500230.1| chr6 6009628 6012321 +
2 domain predictions
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Lj6g3v1078590.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356530639|ref|XP_003533888.1| chr6 12927441 12932314 -
2 domain predictions
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Lj6g3v1078590.2
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356556600|ref|XP_003546612.1| chr6 12927441 12932314 -
2 domain predictions
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Lj6g3v1694970.1
n.a. PREDICTED: myb family transcription factor APL-like isoform X1 [Cicer arietinum] gi|502079873|ref|XP_004486394.1| chr6 19171604 19176252 -
2 domain predictions
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Lj6g3v1694980.1
n.a. Myb family transcription factor [Medicago truncatula] gi|357448183|ref|XP_003594367.1| chr6 19181437 19186871 -
2 domain predictions
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Lj6g3v1694980.2
n.a. Myb family transcription factor [Medicago truncatula] gi|357448183|ref|XP_003594367.1| chr6 19181437 19186968 -
2 domain predictions
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LotjaGi1g1v0081100_LC.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|I3STE6|I3STE6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0081100_LC LjG1.1_chr1 11713714 11716387 -
2 domain predictions
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LotjaGi1g1v0081200.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151S1M9|A0A151S1M9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0081200 LjG1.1_chr1 11725813 11728383 -
2 domain predictions
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LotjaGi1g1v0097500.1
n.a. Transcription factor, putative; TAIR: AT5G16560.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1; TrEMBL-Plants: tr|A0A0S3RL08|A0A0S3RL08_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0097500 LjG1.1_chr1 14791345 14795837 -
2 domain predictions
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LotjaGi1g1v0097500.2
n.a. Myb family transcription factor-like protein; TAIR: AT5G16560.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1; TrEMBL-Plants: tr|A0A1J7HMV3|A0A1J7HMV3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0097500 LjG1.1_chr1 14791462 14795903 -
2 domain predictions
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LotjaGi1g1v0099700.1
n.a. Myb transcription factor; TAIR: AT5G17300.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|F4KGY6|RVE1_ARATH Protein REVEILLE 1; TrEMBL-Plants: tr|A0A0B2S5K9|A0A0B2S5K9_GLYSO Protein CCA1; Found in the gene: LotjaGi1g1v0099700 LjG1.1_chr1 15200861 15204735 +
2 domain predictions
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LotjaGi1g1v0123300.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151U9Y9|A0A151U9Y9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0123300 LjG1.1_chr1 19534884 19538910 -
2 domain predictions
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LotjaGi1g1v0123300.2
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151U9Y9|A0A151U9Y9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0123300 LjG1.1_chr1 19534930 19538827 -
2 domain predictions
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LotjaGi1g1v0185100.1
n.a. MYB-like transcription factor family protein; TAIR: AT1G74840.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1; TrEMBL-Plants: tr|A0A1J7IV60|A0A1J7IV60_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0185100 LjG1.1_chr1 36201377 36204527 +
2 domain predictions
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LotjaGi1g1v0350100.1
n.a. Myb family transcription factor-like protein; TAIR: AT5G42630.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4; TrEMBL-Plants: tr|K7KSW9|K7KSW9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0350100 LjG1.1_chr1 82001953 82005352 -
2 domain predictions
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LotjaGi1g1v0379100.1
n.a. Two-component response regulator; TAIR: AT4G31920.1 response regulator 10; Swiss-Prot: sp|B8AEH1|ORR23_ORYSI Two-component response regulator ORR23; TrEMBL-Plants: tr|A0A0S3RCH7|A0A0S3RCH7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0379100 LjG1.1_chr1 86000229 86005648 -
2 domain predictions
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LotjaGi1g1v0379100.2
n.a. Two-component response regulator; TAIR: AT2G25180.1 response regulator 12; Swiss-Prot: sp|B8AEH1|ORR23_ORYSI Two-component response regulator ORR23; TrEMBL-Plants: tr|I1K8P7|I1K8P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0379100 LjG1.1_chr1 86001139 86005667 -
2 domain predictions
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LotjaGi1g1v0382000_LC.1
n.a. Myb family transcription factor family protein; TAIR: AT5G58900.1 Homeodomain-like transcriptional regulator; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|V7CZA8|V7CZA8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0382000_LC LjG1.1_chr1 86509269 86517894 -
2 domain predictions
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LotjaGi1g1v0438200.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A072U1U5|A0A072U1U5_MEDTR MYB transcription factor MYB51; Found in the gene: LotjaGi1g1v0438200 LjG1.1_chr1 93291087 93294260 +
2 domain predictions
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LotjaGi1g1v0444500.1
n.a. MYB-like transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|K7MTM6|K7MTM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0444500 LjG1.1_chr1 94203973 94206793 -
2 domain predictions
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