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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006702
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 104 results. Now displaying 2 of 3 with 50 rows per page. This search has taken 6.816s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0449300.1
n.a. CASP-like protein; TAIR: AT2G38480.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q5W6M3|CSPLG_ORYSJ CASP-like protein 4B4; TrEMBL-Plants: tr|I1N341|I1N341_SOYBN CASP-like protein; Found in the gene: LotjaGi1g1v0449300 LjG1.1_chr1 94859269 94865825 +
2 domain predictions
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LotjaGi1g1v0505200.1
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DKC2|CASP1_LOTJA Casparian strip membrane protein 1; TrEMBL-Plants: tr|W9R0I2|W9R0I2_9ROSA CASP-like protein; Found in the gene: LotjaGi1g1v0505200 LjG1.1_chr1 102310779 102319745 +
2 domain predictions
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LotjaGi1g1v0505200.2
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DKC2|CASP1_LOTJA Casparian strip membrane protein 1; TrEMBL-Plants: tr|W9R0I2|W9R0I2_9ROSA CASP-like protein; Found in the gene: LotjaGi1g1v0505200 LjG1.1_chr1 102316226 102317613 +
2 domain predictions
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LotjaGi1g1v0539200.1
n.a. CASP-like protein; TAIR: AT2G39518.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T1Z6|CSPLC_SOYBN CASP-like protein 4D1; TrEMBL-Plants: tr|A0A151S7H7|A0A151S7H7_CAJCA CASP-like protein; Found in the gene: LotjaGi1g1v0539200 LjG1.1_chr1 106781380 106784888 +
2 domain predictions
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LotjaGi1g1v0539300.1
n.a. CASP-like protein; TAIR: AT2G39518.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T1Z6|CSPLC_SOYBN CASP-like protein 4D1; TrEMBL-Plants: tr|I3SJZ7|I3SJZ7_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0539300 LjG1.1_chr1 106788151 106789834 +
2 domain predictions
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LotjaGi1g1v0601200.1
n.a. CASP-like protein; TAIR: AT5G54980.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T2J5|CSPL4_SOYBN CASP-like protein 2D1; TrEMBL-Plants: tr|I3SNP2|I3SNP2_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0601200 LjG1.1_chr1 114606516 114609388 -
2 domain predictions
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LotjaGi1g1v0619100.1
n.a. CASP-like protein; TAIR: AT2G27370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T4E0|CASP5_SOYBN Casparian strip membrane protein 5; TrEMBL-Plants: tr|I1N7K9|I1N7K9_SOYBN CASP-like protein; Found in the gene: LotjaGi1g1v0619100 LjG1.1_chr1 116605437 116606646 -
2 domain predictions
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LotjaGi1g1v0630200.1
n.a. CASP-like protein; TAIR: AT4G25040.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9RH17|CSPLA_RICCO CASP-like protein 1F2; TrEMBL-Plants: tr|I3T548|I3T548_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0630200 LjG1.1_chr1 118328801 118330546 +
2 domain predictions
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LotjaGi1g1v0630200.2
n.a. CASP-like protein; TAIR: AT4G25040.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9RH17|CSPLA_RICCO CASP-like protein 1F2; TrEMBL-Plants: tr|I3T548|I3T548_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0630200 LjG1.1_chr1 118328864 118330388 +
2 domain predictions
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LotjaGi1g1v0745900.1
n.a. CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|A7NW78|CSPL5_VITVI CASP-like protein 1E2; TrEMBL-Plants: tr|G7KQZ0|G7KQZ0_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0745900 LjG1.1_chr1 131908718 131913407 +
2 domain predictions
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LotjaGi1g1v0745900.2
n.a. CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|A7NW78|CSPL5_VITVI CASP-like protein 1E2; TrEMBL-Plants: tr|G7KQZ0|G7KQZ0_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0745900 LjG1.1_chr1 131908810 131914217 +
2 domain predictions
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LotjaGi2g1v0120700.1
n.a. CASP-like protein; TAIR: AT2G28370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI70|CSPL2_GINBI CASP-like protein 5A1; TrEMBL-Plants: tr|I3SAB9|I3SAB9_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0120700 LjG1.1_chr2 44354361 44357210 -
2 domain predictions
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LotjaGi2g1v0246900.1
n.a. CASP-like protein; TAIR: AT2G36330.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|O24088|N24_MEDTR CASP-like protein N24; TrEMBL-Plants: tr|I3S1N8|I3S1N8_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0246900 LjG1.1_chr2 71238013 71242454 -
2 domain predictions
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LotjaGi2g1v0246900.2
n.a. CASP-like protein; TAIR: AT2G36330.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|O24088|N24_MEDTR CASP-like protein N24; TrEMBL-Plants: tr|I3S1N8|I3S1N8_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0246900 LjG1.1_chr2 71240680 71242442 -
2 domain predictions
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LotjaGi2g1v0247000.1
n.a. CASP-like protein; TAIR: AT2G36330.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|O24088|N24_MEDTR CASP-like protein N24; TrEMBL-Plants: tr|I3S1N8|I3S1N8_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0247000 LjG1.1_chr2 71244117 71247900 -
2 domain predictions
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LotjaGi2g1v0284600.1
n.a. CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0284600 LjG1.1_chr2 75764901 75768805 +
2 domain predictions
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LotjaGi2g1v0301500.1
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T1G0|CASP7_SOYBN CASP-like protein 7; TrEMBL-Plants: tr|I3SC10|I3SC10_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0301500 LjG1.1_chr2 77557672 77560130 -
2 domain predictions
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LotjaGi2g1v0359100.1
n.a. CASP-like protein; TAIR: AT2G28370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q9SKN3|CSPL6_ARATH CASP-like protein 5A2; TrEMBL-Plants: tr|I3SQS4|I3SQS4_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0359100 LjG1.1_chr2 85641378 85645298 +
2 domain predictions
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LotjaGi2g1v0359100.2
n.a. CASP-like protein; TAIR: AT2G28370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q9SKN3|CSPL6_ARATH CASP-like protein 5A2; TrEMBL-Plants: tr|I3SQS4|I3SQS4_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0359100 LjG1.1_chr2 85641982 85644326 +
2 domain predictions
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LotjaGi3g1v0178400.1
n.a. CASP-like protein; TAIR: AT2G27370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI56|CASP3_LOTJA Casparian strip membrane protein 3; TrEMBL-Plants: tr|A0A0B2RLZ5|A0A0B2RLZ5_GLYSO CASP-like protein; Found in the gene: LotjaGi3g1v0178400 LjG1.1_chr3 24774928 24776394 +
2 domain predictions
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LotjaGi3g1v0201500.1
n.a. CASP-like protein; TAIR: AT2G38480.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q5W6M3|CSPLG_ORYSJ CASP-like protein 4B4; TrEMBL-Plants: tr|I3S8H3|I3S8H3_LOTJA CASP-like protein; Found in the gene: LotjaGi3g1v0201500 LjG1.1_chr3 29396872 29402362 +
2 domain predictions
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LotjaGi3g1v0201700.1
n.a. CASP-like protein; TAIR: AT2G38480.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8LE26|CSPLA_ARATH CASP-like protein 4B1; TrEMBL-Plants: tr|I3S7L6|I3S7L6_LOTJA CASP-like protein; Found in the gene: LotjaGi3g1v0201700 LjG1.1_chr3 29411825 29414192 +
2 domain predictions
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LotjaGi3g1v0228900.1
n.a. CASP-like protein; TAIR: AT3G53850.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q945M8|CSPLI_ARATH CASP-like protein 5B2; TrEMBL-Plants: tr|I3T8B7|I3T8B7_LOTJA CASP-like protein; Found in the gene: LotjaGi3g1v0228900 LjG1.1_chr3 35734687 35738067 +
2 domain predictions
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LotjaGi3g1v0368900.1
n.a. CASP-like protein; TAIR: AT3G16300.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9GXD6|CSPLO_POPTR CASP-like protein 3A1; TrEMBL-Plants: tr|A0A151SHG8|A0A151SHG8_CAJCA CASP-like protein; Found in the gene: LotjaGi3g1v0368900 LjG1.1_chr3 75554234 75557410 -
2 domain predictions
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LotjaGi3g1v0429100.1
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI58|CSPL2_LOTJA CASP-like protein 2; TrEMBL-Plants: tr|A0A151UBC7|A0A151UBC7_CAJCA CASP-like protein; Found in the gene: LotjaGi3g1v0429100 LjG1.1_chr3 84035885 84037654 -
2 domain predictions
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LotjaGi3g1v0454600.1
n.a. CASP-like protein; TAIR: AT1G03700.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9RW00|CSPL6_RICCO CASP-like protein 1C1; TrEMBL-Plants: tr|A0A072TJ77|A0A072TJ77_MEDTR CASP-like protein; Found in the gene: LotjaGi3g1v0454600 LjG1.1_chr3 86788199 86790086 +
2 domain predictions
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LotjaGi3g1v0503900.1
n.a. CASP-like protein; TAIR: AT3G50810.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein 5C1; TrEMBL-Plants: tr|I1LJI7|I1LJI7_SOYBN CASP-like protein; Found in the gene: LotjaGi3g1v0503900 LjG1.1_chr3 92205624 92217939 +
2 domain predictions
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LotjaGi3g1v0503900.2
n.a. CASP-like protein; TAIR: AT1G49405.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein 5C1; TrEMBL-Plants: tr|A0A067EJK8|A0A067EJK8_CITSI CASP-like protein; Found in the gene: LotjaGi3g1v0503900 LjG1.1_chr3 92209066 92215013 +
2 domain predictions
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LotjaGi3g1v0503900.3
n.a. CASP-like protein; TAIR: AT3G50810.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein 5C1; TrEMBL-Plants: tr|I1LJI7|I1LJI7_SOYBN CASP-like protein; Found in the gene: LotjaGi3g1v0503900 LjG1.1_chr3 92212467 92215395 +
2 domain predictions
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LotjaGi3g1v0503900.4
n.a. CASP-like protein; TAIR: AT3G50810.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein 5C1; TrEMBL-Plants: tr|I1LJI7|I1LJI7_SOYBN CASP-like protein; Found in the gene: LotjaGi3g1v0503900 LjG1.1_chr3 92213241 92214306 +
2 domain predictions
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LotjaGi3g1v0503900.5
n.a. CASP-like protein; TAIR: AT3G50810.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein 5C1; TrEMBL-Plants: tr|I1LJI7|I1LJI7_SOYBN CASP-like protein; Found in the gene: LotjaGi3g1v0503900 LjG1.1_chr3 92213282 92214317 +
2 domain predictions
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LotjaGi4g1v0056000.1
n.a. CASP-like protein; TAIR: AT1G03700.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9H2V1|CSPL6_POPTR CASP-like protein 1C3; TrEMBL-Plants: tr|V7CR19|V7CR19_PHAVU CASP-like protein; Found in the gene: LotjaGi4g1v0056000 LjG1.1_chr4 6737478 6738819 +
2 domain predictions
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LotjaGi4g1v0113000.1
n.a. CASP-like protein; TAIR: AT3G50810.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|D7LTJ4|CSPLN_ARALL CASP-like protein ARALYDRAFT_485429; TrEMBL-Plants: tr|I3SC71|I3SC71_LOTJA CASP-like protein; Found in the gene: LotjaGi4g1v0113000 LjG1.1_chr4 16316370 16318916 +
2 domain predictions
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LotjaGi4g1v0113000.2
n.a. CASP-like protein; TAIR: AT3G50810.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|D7LTJ4|CSPLN_ARALL CASP-like protein ARALYDRAFT_485429; TrEMBL-Plants: tr|I3SC71|I3SC71_LOTJA CASP-like protein; Found in the gene: LotjaGi4g1v0113000 LjG1.1_chr4 16318237 16318638 +
2 domain predictions
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LotjaGi4g1v0235000.1
n.a. CASP-like protein; TAIR: AT2G36330.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|D7MMW4|CSPLJ_ARALL CASP-like protein 4A2; TrEMBL-Plants: tr|I3STP7|I3STP7_MEDTR CASP-like protein; Found in the gene: LotjaGi4g1v0235000 LjG1.1_chr4 54915897 54918907 -
2 domain predictions
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LotjaGi4g1v0299300.1
n.a. CASP-like protein; TAIR: AT4G25830.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SZ04|CSPL3_SOYBN CASP-like protein 2C1; TrEMBL-Plants: tr|V7CBQ1|V7CBQ1_PHAVU CASP-like protein; Found in the gene: LotjaGi4g1v0299300 LjG1.1_chr4 67337214 67340298 +
2 domain predictions
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LotjaGi4g1v0299300.2
n.a. CASP-like protein; TAIR: AT4G25830.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SZ04|CSPL3_SOYBN CASP-like protein 2C1; TrEMBL-Plants: tr|V7CBQ1|V7CBQ1_PHAVU CASP-like protein; Found in the gene: LotjaGi4g1v0299300 LjG1.1_chr4 67337313 67339703 +
2 domain predictions
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LotjaGi4g1v0346000.1
n.a. CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6TBD0|CSPL6_SOYBN CASP-like protein 1E1; TrEMBL-Plants: tr|I3T6M8|I3T6M8_LOTJA CASP-like protein; Found in the gene: LotjaGi4g1v0346000 LjG1.1_chr4 72547374 72550706 -
2 domain predictions
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LotjaGi4g1v0346100.1
n.a. CASP-like protein; TAIR: AT3G06390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SVQ5|CSPL7_SOYBN CASP-like protein 1D2; TrEMBL-Plants: tr|I3SHN8|I3SHN8_LOTJA CASP-like protein; Found in the gene: LotjaGi4g1v0346100 LjG1.1_chr4 72560820 72566303 +
2 domain predictions
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LotjaGi4g1v0390100.1
n.a. CASP-like protein; TAIR: AT5G44550.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6TG62|CSPL9_SOYBN CASP-like protein 1B1; TrEMBL-Plants: tr|A0A151TKN9|A0A151TKN9_CAJCA CASP-like protein; Found in the gene: LotjaGi4g1v0390100 LjG1.1_chr4 76850691 76861472 -
2 domain predictions
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LotjaGi5g1v0099800.1
n.a. CASP-like protein; TAIR: AT2G36100.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI57|CASP5_LOTJA Casparian strip membrane protein 5; TrEMBL-Plants: tr|A0A151U3S8|A0A151U3S8_CAJCA CASP-like protein; Found in the gene: LotjaGi5g1v0099800 LjG1.1_chr5 17990518 17992126 +
2 domain predictions
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LotjaGi5g1v0100000.1
n.a. CASP-like protein; TAIR: AT2G36100.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI40|CASP1_VIGUN Casparian strip membrane protein 1; TrEMBL-Plants: tr|A0A151U3S8|A0A151U3S8_CAJCA CASP-like protein; Found in the gene: LotjaGi5g1v0100000 LjG1.1_chr5 18029914 18031205 -
2 domain predictions
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LotjaGi5g1v0102500.1
n.a. CASP-like protein; TAIR: AT3G11550.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI55|CASP4_LOTJA Casparian strip membrane protein 4; TrEMBL-Plants: tr|A0A151U3S8|A0A151U3S8_CAJCA CASP-like protein; Found in the gene: LotjaGi5g1v0102500 LjG1.1_chr5 18558990 18560335 -
2 domain predictions
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LotjaGi5g1v0183900.1
n.a. CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi5g1v0183900 LjG1.1_chr5 46792455 46801000 +
2 domain predictions
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LotjaGi5g1v0183900.2
n.a. CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi5g1v0183900 LjG1.1_chr5 46795013 46799988 +
2 domain predictions
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LotjaGi5g1v0183900.3
n.a. CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi5g1v0183900 LjG1.1_chr5 46795013 46799988 +
2 domain predictions
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LotjaGi5g1v0355600.1
n.a. CASP-like protein; TAIR: AT3G55390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9HTK2|CSPLI_POPTR CASP-like protein 4C2; TrEMBL-Plants: tr|V7BA13|V7BA13_PHAVU CASP-like protein; Found in the gene: LotjaGi5g1v0355600 LjG1.1_chr5 67074330 67076905 +
2 domain predictions
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LotjaGi5g1v0355600.2
n.a. CASP-like protein; TAIR: AT3G55390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9HTK2|CSPLI_POPTR CASP-like protein 4C2; TrEMBL-Plants: tr|V7BA13|V7BA13_PHAVU CASP-like protein; Found in the gene: LotjaGi5g1v0355600 LjG1.1_chr5 67075606 67076182 +
2 domain predictions
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LotjaGi6g1v0006300.1
n.a. CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi6g1v0006300 LjG1.1_chr6 1274686 1278417 -
2 domain predictions
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LotjaGi6g1v0006300.2
n.a. CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi6g1v0006300 LjG1.1_chr6 1274749 1278417 -
2 domain predictions
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