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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017986
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 823 results. Now displaying 6 of 17 with 50 rows per page. This search has taken 6.754s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v1801290.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356565224|ref|XP_003550842.1| chr4 25460658 25467694 -
3 domain predictions
1 GO term
Lj4g3v1813490.1
n.a. PREDICTED: serine-threonine kinase receptor-associated protein-like [Glycine max] gi|356563065|ref|XP_003549786.1| chr4 25541047 25545642 -
3 domain predictions
1 GO term
Lj4g3v1881380.1
n.a. PREDICTED: WD repeat-containing protein 11-like [Cicer arietinum] gi|502151508|ref|XP_004508475.1| chr4 26432664 26447251 +
2 domain predictions
1 GO term
Lj4g3v1881470.1
n.a. PREDICTED: topless-related protein 4-like isoform X1 [Cicer arietinum] gi|502151499|ref|XP_004508471.1| chr4 26477491 26487600 -
3 domain predictions
1 GO term
Lj4g3v1881470.2
n.a. PREDICTED: topless-related protein 4-like isoform X1 [Cicer arietinum] gi|502151499|ref|XP_004508471.1| chr4 26477491 26487600 -
3 domain predictions
1 GO term
Lj4g3v1983650.1
n.a. transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30693183|ref|NP_190509.2| chr4 27673314 27681658 -
3 domain predictions
1 GO term
Lj4g3v1983650.3
n.a. transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30693183|ref|NP_190509.2| chr4 27673314 27681658 -
3 domain predictions
1 GO term
Lj4g3v2018270.1
n.a. Autophagy-related protein [Medicago truncatula] gi|357479937|ref|XP_003610254.1| chr4 27967954 27973173 +
2 domain predictions
1 GO term
Lj4g3v2018270.2
n.a. PREDICTED: autophagy-related protein 18-like [Glycine max] gi|356562531|ref|XP_003549523.1| chr4 27967954 27973173 +
2 domain predictions
1 GO term
Lj4g3v2120410.1
n.a. PREDICTED: WD repeat-containing protein 75-like [Cicer arietinum] gi|502150260|ref|XP_004507867.1| chr4 28997524 29006742 -
3 domain predictions
1 GO term
Lj4g3v2139570.1
n.a. PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1| chr4 29457742 29460534 -
2 domain predictions
1 GO term
Lj4g3v2172780.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like [Cicer arietinum] gi|502151023|ref|XP_004508240.1| chr4 29936379 29941269 -
3 domain predictions
1 GO term
Lj4g3v2289100.1
n.a. PREDICTED: WD repeat-containing protein 43-like [Cicer arietinum] gi|502150903|ref|XP_004508181.1| chr4 31812817 31820482 -
2 domain predictions
1 GO term
Lj4g3v2289120.1
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr4 31831793 31841555 -
3 domain predictions
1 GO term
Lj4g3v2295530.1
n.a. p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|357450557|ref|XP_003595555.1| chr4 31975006 31980071 +
3 domain predictions
1 GO term
Lj4g3v2352060.1
n.a. PREDICTED: WD repeat-containing protein 5-like [Glycine max] gi|356521875|ref|XP_003529576.1| chr4 32467594 32469488 -
3 domain predictions
1 GO term
Lj4g3v2539190.1
n.a. PREDICTED: SEC12-like protein 2-like isoform X2 [Cicer arietinum] gi|502143257|ref|XP_004505275.1| chr4 34164243 34167499 +
3 domain predictions
1 GO term
Lj4g3v2561510.1
n.a. PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Cicer arietinum] gi|502141015|ref|XP_004504409.1| chr4 34300309 34305412 -
3 domain predictions
1 GO term
Lj4g3v2605950.1
n.a. Cellulose synthase [Medicago truncatula] gi|357519009|ref|XP_003629793.1| chr4 35442371 35448376 -
3 domain predictions
1 GO term
Lj4g3v2717130.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356528432|ref|XP_003532807.1| chr4 36600065 36602899 +
3 domain predictions
1 GO term
Lj4g3v2742950.1
n.a. PREDICTED: chromatin assembly factor 1 subunit B-like [Glycine max] gi|356512829|ref|XP_003525118.1| chr4 36885126 36889375 +
3 domain predictions
1 GO term
Lj4g3v2775540.1
n.a. PREDICTED: WD repeat domain-containing protein 83-like [Cicer arietinum] gi|502139939|ref|XP_004503980.1| chr4 37151174 37154517 +
3 domain predictions
1 GO term
Lj4g3v2871900.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max] gi|356516478|ref|XP_003526921.1| chr4 38414180 38419189 -
3 domain predictions
1 GO term
Lj4g3v2963540.1
n.a. n.a. chr4 39257001 39272101 +
2 domain predictions
1 GO term
Lj4g3v2991190.1
n.a. transducin family protein [Arabidopsis lyrata subsp]. lyrata] gi|297809371|ref|XP_002872569.1| chr4 39541977 39547126 -
3 domain predictions
1 GO term
Lj4g3v3014540.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Glycine max] gi|356527704|ref|XP_003532448.1| chr4 40143191 40147405 -
3 domain predictions
1 GO term
Lj4g3v3014540.2
n.a. PREDICTED: WD repeat-containing protein 44-like [Glycine max] gi|356527704|ref|XP_003532448.1| chr4 40145257 40147230 -
3 domain predictions
1 GO term
Lj4g3v3031670.1
n.a. PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Cicer arietinum] gi|502138151|ref|XP_004503304.1| chr4 40596509 40596697 -
2 domain predictions
1 GO term
Lj4g3v3061490.3
n.a. U-box domain-containing protein [Medicago truncatula] gi|357520957|ref|XP_003630767.1| chr4 40818554 40821104 +
3 domain predictions
1 GO term
Lj4g3v3096100.1
n.a. Stomatal cytokinesis defective / SCD1 protein (SCD1) isoform 1 [Theobroma cacao] gi|508773727|gb|EOY20983.1| chr4 41111013 41123830 -
3 domain predictions
1 GO term
Lj4g3v3114540.1
n.a. PREDICTED: 66 kDa stress protein-like [Glycine max] gi|356527884|ref|XP_003532536.1| chr4 41994731 41999381 -
3 domain predictions
1 GO term
Lj5g3v0196790.1
n.a. PREDICTED: WD repeat-containing protein 36-like [Glycine max] gi|356527435|ref|XP_003532316.1| chr5 1682624 1691771 -
3 domain predictions
1 GO term
Lj5g3v0553260.1
n.a. PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Glycine max] gi|356518282|ref|XP_003527808.1| chr5 6606409 6616859 -
3 domain predictions
1 GO term
Lj5g3v0553260.2
n.a. PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Glycine max] gi|356518282|ref|XP_003527808.1| chr5 6606767 6616859 -
3 domain predictions
1 GO term
Lj5g3v0845670.1
n.a. PREDICTED: WD repeat-containing protein 74-like [Glycine max] gi|356560339|ref|XP_003548450.1| chr5 12316288 12323464 +
3 domain predictions
1 GO term
Lj5g3v0868360.1
n.a. PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like [Glycine max] gi|356500553|ref|XP_003519096.1| chr5 12522201 12534517 -
3 domain predictions
1 GO term
Lj5g3v0977410.1
n.a. PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus] gi|449458536|ref|XP_004147003.1| chr5 15378667 15382001 +
3 domain predictions
1 GO term
Lj5g3v1014710.1
n.a. PREDICTED: BEACH domain-containing protein lvsA-like isoform X1 [Cicer arietinum] gi|502115252|ref|XP_004495161.1| chr5 16303724 16322712 +
3 domain predictions
1 GO term
Lj5g3v1275070.1
n.a. PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cicer arietinum] gi|502116639|ref|XP_004495528.1| chr5 20178567 20194739 +
2 domain predictions
1 GO term
Lj5g3v1275070.2
n.a. PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cicer arietinum] gi|502116639|ref|XP_004495528.1| chr5 20178567 20194227 +
2 domain predictions
1 GO term
Lj5g3v1427710.1
n.a. PREDICTED: WD repeat-containing protein 48-like [Cicer arietinum] gi|502117294|ref|XP_004495771.1| chr5 21245676 21259626 +
3 domain predictions
1 GO term
Lj5g3v1451080.1
n.a. PREDICTED: autophagy-related protein 18h-like isoform X3 [Cicer arietinum] gi|502117260|ref|XP_004495759.1| chr5 21380972 21388659 -
2 domain predictions
1 GO term
Lj5g3v1496760.1
n.a. PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max] gi|356535069|ref|XP_003536071.1| chr5 21727842 21730544 -
2 domain predictions
1 GO term
Lj5g3v1511490.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr5 21997495 22021980 +
3 domain predictions
1 GO term
Lj5g3v1511500.1
n.a. PREDICTED: topless-related protein 3-like [Glycine max] gi|356576819|ref|XP_003556527.1| chr5 22023166 22024426 +
2 domain predictions
1 GO term
Lj5g3v1598550.1
n.a. PREDICTED: PH-interacting protein-like [Cicer arietinum] gi|502117700|ref|XP_004495905.1| chr5 23063364 23070603 +
3 domain predictions
1 GO term
Lj5g3v1598560.2
n.a. PREDICTED: PH-interacting protein-like [Cicer arietinum] gi|502117700|ref|XP_004495905.1| chr5 23070759 23074423 +
3 domain predictions
1 GO term
Lj5g3v1681420.1
n.a. PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cicer arietinum] gi|502117906|ref|XP_004496004.1| chr5 23867501 23869559 -
3 domain predictions
1 GO term
Lj5g3v1692550.1
n.a. PREDICTED: LOW QUALITY PROTEIN: LEC14B protein-like [Cicer arietinum] gi|502118008|ref|XP_004496055.1| chr5 23957998 23963168 +
3 domain predictions
1 GO term
Lj5g3v1692550.2
n.a. PREDICTED: LOW QUALITY PROTEIN: LEC14B protein-like [Cicer arietinum] gi|502118008|ref|XP_004496055.1| chr5 23958107 23963168 +
3 domain predictions
1 GO term