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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0024609 |
| Transcript ID | Lj0g3v0024609.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi|502154028|ref|XP_004509555.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 11 | 11 | – | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 12 | 12 | – | – | |
| Phobius | 13 | 19 | 7 | – | – | |
| Phobius | 20 | 23 | 4 | – | – | |
| MobiDBLite | 22 | 61 | 40 | – | – | |
| Phobius | 24 | 938 | 915 | – | – | |
| PANTHER | 134 | 468 | 335 | 0 | – | |
| PANTHER | 134 | 468 | 335 | 0 | – | |
| ProSiteProfiles | 205 | 321 | 117 | 17.854 | ||
| SMART | 205 | 321 | 117 | 1.80E-17 | ||
| Pfam | 209 | 320 | 112 | 7.90E-09 | ||
| MobiDBLite | 325 | 344 | 20 | – | – | |
| Gene3D | 346 | 405 | 60 | 9.50E-54 | ||
| ProSiteProfiles | 351 | 891 | 541 | 44.317 | ||
| SUPERFAMILY | 351 | 402 | 52 | 1.38E-71 | ||
| PRINTS | 352 | 368 | 17 | 8.80E-11 | ||
| MobiDBLite | 433 | 456 | 24 | – | – | |
| SUPERFAMILY | 454 | 520 | 67 | 2.41E-12 | ||
| Gene3D | 456 | 517 | 62 | 8.20E-14 | – | |
| CDD | 458 | 516 | 59 | 7.50E-09 | – | |
| SMART | 459 | 518 | 60 | 8.80E-08 | ||
| ProSiteProfiles | 460 | 516 | 57 | 11.942 | ||
| Pfam | 461 | 515 | 55 | 4.70E-10 | ||
| SUPERFAMILY | 505 | 697 | 193 | 1.38E-71 | ||
| Gene3D | 518 | 710 | 193 | 9.50E-54 | ||
| Pfam | 523 | 884 | 362 | 1.60E-35 | ||
| TIGRFAM | 527 | 883 | 357 | 2.90E-31 | ||
| PANTHER | 527 | 914 | 388 | 0 | – | |
| PANTHER | 527 | 914 | 388 | 0 | – | |
| ProSitePatterns | 530 | 542 | 13 | – | ||
| PRINTS | 573 | 587 | 15 | 8.80E-11 | ||
| PRINTS | 619 | 632 | 14 | 8.80E-11 | ||
| SUPERFAMILY | 734 | 766 | 33 | 1.38E-71 | ||
| SUPERFAMILY | 800 | 884 | 85 | 1.38E-71 | ||
| Gene3D | 827 | 872 | 46 | 5.00E-09 | – | |
| MobiDBLite | 917 | 938 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of Lj0g3v0024609.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0024609.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.