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Lj1g3v1290440.1

Overview

Field Value
Gene ID Lj1g3v1290440
Transcript ID Lj1g3v1290440.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi|502164095|ref|XP_004513047.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51038
1 95 95 13.68
IPR001025
PANTHER
PTHR10629:SF28
1 253 253 0 –
PANTHER
PTHR10629
1 253 253 0 –
MobiDBLite
mobidb-lite
96 134 39 – –
Gene3D
G3DSA:3.40.50.150
134 193 60 1.70E-56
IPR029063
SUPERFAMILY
SSF53335
138 190 53 1.60E-50
IPR029063
ProSiteProfiles
PS51679
139 610 472 29.391
IPR001525
PRINTS
PR00105
140 156 17 5.00E-12
IPR001525
SUPERFAMILY
SSF54160
242 308 67 4.30E-12
IPR016197
Gene3D
G3DSA:2.40.50.40
245 301 57 4.50E-14 –
CDD
cd00024
249 301 53 6.18E-08 –
SMART
SM00298
250 306 57 8.50E-06
IPR000953
ProSiteProfiles
PS50013
251 301 51 11.073
IPR000953
Pfam
PF00385
252 301 50 4.90E-09
IPR023780
ProSitePatterns
PS00598
271 291 21 –
IPR023779
SUPERFAMILY
SSF53335
293 485 193 1.60E-50
IPR029063
Gene3D
G3DSA:3.40.50.150
302 498 197 1.70E-56
IPR029063
Pfam
PF00145
312 490 179 1.60E-20
IPR029063
PANTHER
PTHR10629:SF28
315 610 296 0 –
PANTHER
PTHR10629
315 610 296 0 –
ProSitePatterns
PS00094
318 330 13 –
IPR018117
PRINTS
PR00105
361 375 15 5.00E-12
IPR001525
PRINTS
PR00105
407 420 14 5.00E-12
IPR001525
SUPERFAMILY
SSF53335
520 552 33 1.60E-50
IPR029063
SUPERFAMILY
SSF53335
587 609 23 1.60E-50
IPR029063

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v1290440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1290440.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.