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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0055400 |
| Transcript ID | LotjaGi4g1v0055400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA mismatch repair protein MutS2; TAIR: AT1G65070.2 DNA mismatch repair protein MutS, type 2; Swiss-Prot: sp|P73625|MUTS2_SYNY3 Endonuclease MutS2; TrEMBL-Plants: tr|I1KLI9|I1KLI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6679674..6685055) extracted from Lotus japonicus Gifu genome v1.2.
AAACCAACTAACCAAAGTTCCTCCACACAACAACCCAATCCATAACAAACTGGAGGCAGACTCGACTCACTGAGCAACTC GGTTGCCGCGACTCACTCACGGATGCAACTCAGCAGCTGCAACCTCCTCTTCATTCCGGCGAAGAACCCCCCACGGTTTT CATTCAAACCCTGCTTCTGCTTCAACCATAACTCGGCCGAGTCAAACTCACTCCAAGCCGAGACCCTCAAGACACTGGAA TGGAGCTCCATATGCAAGCACCTCTCTGCATTCACCTCCACCTCCATGGGCTCCTCCGCCGCCAACGCCGCCCGTTTGCC CATCGGACGGACCCCTCAGGAGAGCCAGAAGCTTCTCGACCAGACTTCCGCCGCCAGACTCGTCACTCATCCGCCTGACT TCACCGGAATCCATGACTTGACGGAGATTCTCACTGTTGCTGTCTCCGGTCAGCTGCTAACCATCCCGGAGCTTTGCACC GTTCGCCGCACGCTTACTGCCGCCAGAGAATTGTTCCACAATTTGAAACACTTGGCTTCTGCTTCTAGTAATCCACAAAG GTATACTAATGTTACACATATAACTTTCTGTCTGTTATTGTCAGTTAGCTGAGTCGTTAGACTGTTATGATTCTGTTATT GAGTTAGTTAAGAGGTAGCCTGATGCGACATATGTTAGACACTTCTTGTGTCTAAGTGTGGGTGTCGTGTCGCGATGTCA TGCTTCATAGGTACGAGTCTAGTGGCGGATGAAGCACTACACCGCAACACGACACCGACACTGCTGCGATGAAGTGTCTG ACACGTGTCGCGTCGGTGTTGTACTGAGTGTTGGTGTCATGTTTGACACTGGGACACTTCATATCTTAGAGGTGACCGTG CTTCATAGGTGAGTCCTGAAATTATACGGGAGTTTCATTAAGCCATATATAGATTATTTTCACTCTTAGTTTTCAGTCTT TTCTCCCTAGTTTACATTCTTAATATGTTAATCATTTTCTTAGAGTGGCACTCTAGAAGGTTTATGTGACTTTCATGCTC TCAAATCTAATTTGATTTAGTTCAAAGGGGTGATATGAAGTTACAAACAATAGCCTTCATTCAAGGGTTTTTTATGGACT AATTCTGCTTACAAGCAGCTTCTTTTTATGCATTTTGGCTAGGTGCTGTATTTTTCTTGATTAACTTTGGGGTATAGATT GGTAATGGATTCTCAAGTCCCCATAAGGCCTTAAAAGAAAGTTTAGCTCCAAGATAATGATGGCATGCTGAGTGTAGTAC TCCAATTGAACTTGTCCTTTTGGCCATAATTGCTTCCTTCTAGAAATCCTGAGATAATGATCAGAATAAATAACCTTGGT GATTCAATTTTTCCAATCAGGTACATACCCCTTCTTGAAATACTGCGTAATTGTAATTTTCAACTGGACTTGGAGCGTAA AATAGGATTTTGCGTAGATTGCAAGCTTTCAGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAAA GAAGGAGGAACCTAGAAAATTTGGATTCTTTATTGAAGGAAGCATCATCTCAAATCTTCCGGGCTGGGGGCATTGACAGA CCATTAATAACTAAGCGTCGATCTAGAATGTGTGTCGGTGTTAGGGCTTCCCATAGATACTTGCTTCCAAATGGGGTTGT TCTGAATGTTAGCAGTTCTGGAGCAACATACTTTATGGAACCCAAAGACGCAATAGATCTGAACAACATGGAAGTTAGGC TTTCGAACTCCGAGAAGGCTGAGGAAAGAGCTATCTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATA AACTATTTATTGGATAGAATTCTTGAGGTTGATCTCGCTTTTGCAAGAGCTGCCTATGCTGGATGGATGAATGGGGTGTG TCCAATTTTTAGTTTAGGTAATTTTGAAGGCTGTGATTCAGTTGAAGAGGATGATGATTTAACAGTAAATATTGATGGTG TACGACATCCATTACTTCTGGAGTCCTCCCTAGAAAAAAATTCAGATAATCTTACAAGATCTGGAAATGTTGCGAAGTTG GGGAATGGAAACGGAGCAGTGGCTTCTACAAATAGACCACAAGGCTTATCAGACTTCCCTGTGCCAGTTGACTTTAAAAT TAGACATGGAACTAGAGTGGTGGTGATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCCATGAAAACATTGGGCCTGG TGTCACTTATGTCAAAGGCTGGAATGCACCTGCCTGCCAAGAACAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCA GATATTGGAGATCATCAGGTAATATCTGAACTTTTTTATGGACAATAAAGACATTTGGTTGACATCATGTAGTTGTTTCG TTTGTTGTCTGATTCTTGTTTTTCCCCTCCAAATTGAAGTCCCTTGAACAAAACCTCTCAACTTTTAGTGGGCACATCTC ACGTATTTGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATCGGCAGTGGAACTGATCCAT CAGAAGGTGTAGCTCTTTCTACCAGTATCTTACAATATTTAAAGGATCATGTTAACTTGGCTGTTGTGACCACTCATTAT GCTGATCTAAGTAATTTGAAGGAAAAGGATACCAGTTTTGACAATGCAGCAATGGAGTTTTCACTTGAAACATTAGAACC AACTTATAGGATCCTTTGGGGATGTACTGGTGATTCAAATGCCTTAAGCATAGCACAATCTATTGGCTTCGATAGAAATG TAATTAATCATGCCCAAAAATGGGTAGAGAAGTTAAAACCAGAACAGCAGCAAGAGCGAAGAGGAATACTGTATCAGTCA TTGCAGGAGGAAAGAAACCGATTAAAGGCCCAGGCTGAAAAGGCTGCATACATTCATAAAGAAATCATGGACGTATACCG TGAGGTACAATCTGGTTGTTAAGGGGATTCTGCTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATT ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAGCTTCTTTATCATCATATTTGCAGTTGATTAT TTTGTTGCGTTTTCTCCTCTCACACTCCTTTTTAAATATTGCAAAGATCCAAGGGGAGGCAGAAGACCTTGATAGACGAG AGATGGAACTTATGGCAAAGGAAACTCAGCAGGTCCAACAAGAGCTAGAGGATGCAAAATCTCAGATGGAAACAACGATA CAGAAATTTGAAAAGGAACTCAGAGTCTCTGGGCGTGATAAACTCAATTCACTTATTAGAGAATCTGAATCTGTGATTGC CTCCATTGTAAAATCCCATACTCCTCCTGATAGTTTTCCTGTCAGTGAAGCTGATCACGGTTCATATGCTCCACAATTTG GCGACCAAGTTCGTGTAAAGGGATTGGGAGGGAAATTAGCCACAGTGGTTGAGTTGCCTGGGGATGATGAGGCAATCCTG GTACAGTATGGTAAAGTGAAAGTCCGTGTGAAAAAAAGTAGCATCATAGCTATTCCATCCAGTGCAAAGAATGCTGTAAC TAGTTCTTCCACAAATCAGGGGAGGCAGGTATGCATTAAAAGGTTTAGATCTTTGCTCTTGTGTTAATGTTTAATAACTG ACCTTTCATGGAAGAAATAATGTTATGTACTTTCTCATTAAGAAAGTGAAAGTGATTATGGCTAGCATTGATTAAAAGAG ACATTTCTGAACATGGGAAAACTTAGCTTAAGTTGAAAGAAGAACTGCTGTTGATCATGTTTCTAGTTAGATCATCCTCT AATTAGGGCCCATATCAAGTTTATATCTAAAAATTGTTATGTCTCCTTTATAAAACAGGCTTCTTAACCTGATTTGATTT ATTCAAAAGTTCAGAGGATAATTTCATTGGTCTAAATCAAAATCCTAAGGTTTAACATTTTGATTTAATTTGTAGAGTCT GCAGAAAGCACAACACAGGGGTAATTTAGATGTCAACAGCAATGATGATCTTCCATATGGTCCAGTGGTGCGAACATCTA AGAATACTGTGGATCTTCGCGGTATGCGAGTGGAAGAAGCTTCTATCCACCTTGAGATGGCAATTAATGCAAGTCGACCA TATTCGGTTCTCTTTGTGATACATGGGATGGGCACTGGCGCTATTAAGGAACGTGCGCTTGAGATCTTACAGAGTCATGC ACGTGTTTCTAATTATGAGCCTGAAAATCCAATGAATTATGGTTGTACCATTGCCTATGTCAAGTGAACCCTCGTTGCCC TGGTGCCATAAGCCATGCCAGGTTAACCCACTTTTGTTAAGGAAAGCCCTGCTCCTTTCTTACCTGATCAACCAAATGAC TAATTTGATTTGTACACAAACAAATATAATCAAATGAGAGATTATAGCAGTTTTAATTTATTGATATCTACACCAGCGTT CTTTGTTTTTTTGATATCATCTTCTGAAGCATTCTTTACCGCTTTTCCTCTAACAGAGTGAATTTTTAATTTGTTCTATC TATATGATGGCTCTAGAAATGGTAGCACCCTGACAATAAAGTATGATGTGCAGTGGAAAGTTCGAAAGTTCGGCTGATAG AAAGTTCATGAAGATACTCCCTTACGGTTATTGTGAGAAAGATAAGAAAGATTTTAGCAAGCAAGGGATTCATAAACCTC AGACCCCAGAAGAAATTGTATAGAAGTCCAAAATCCTTTTGGCCGAGTTCTATGGTAATTCTGGAATATTGGCAGGGAAG GAGGAAAGGGGAGAAAAGAGACTCCTAAATTCTGTAATTCCTACAGTTCACCAAACCTCCAAGTGAAATTTAATGGCTTT GTCCCACAAAGAAGACAGTCCATTATGCTAAAGCAGTGTCTTAGTGTTTATTATTGTTTGTCATTTCTCATGTATATGTT CTAAATTTTAAAAGCACAGACTGTGAAATCACTGTCTTGAGAATATTGCAATGTTTAAACATGGAATTTTTAGTTACCGC TGCTGTATATGCATAAGAAATCAGAGAAGTAAATATTTGAATTCAAATGTTTGAAGTTTGCTGTTCTTGCAGAATTGTGG AAATGAAGAGCTTCCTCTAGGAAGATAAAACAGATGTGGAGAAAGAATGGTCGAGGAAGATAGAAGTACACTCCAGTGAA GTTCAACTAATAAAGTTCCAACCAAGAAAAGAATAAGTTGATTTTCTTTGAATGTACTTAGGCATATCAAAGCTGAATGT CCTCAATCTATAGTGATTTTCTTTACACATTACTATGTCAGTCTTCATTGAGATAATACAACTTCTCATTGAAACTGTAG ACATAATTATTTCTATCTAAAG
CDS sequence (LotjaGi4g1v0055400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACTCAGCAGCTGCAACCTCCTCTTCATTCCGGCGAAGAACCCCCCACGGTTTTCATTCAAACCCTGCTTCTGCTT CAACCATAACTCGGCCGAGTCAAACTCACTCCAAGCCGAGACCCTCAAGACACTGGAATGGAGCTCCATATGCAAGCACC TCTCTGCATTCACCTCCACCTCCATGGGCTCCTCCGCCGCCAACGCCGCCCGTTTGCCCATCGGACGGACCCCTCAGGAG AGCCAGAAGCTTCTCGACCAGACTTCCGCCGCCAGACTCGTCACTCATCCGCCTGACTTCACCGGAATCCATGACTTGAC GGAGATTCTCACTGTTGCTGTCTCCGGTCAGCTGCTAACCATCCCGGAGCTTTGCACCGTTCGCCGCACGCTTACTGCCG CCAGAGAATTGTTCCACAATTTGAAACACTTGGCTTCTGCTTCTAGTAATCCACAAAGGTACATACCCCTTCTTGAAATA CTGCGTAATTGTAATTTTCAACTGGACTTGGAGCGTAAAATAGGATTTTGCGTAGATTGCAAGCTTTCAGTAATTCTTGA TAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAAAGAAGGAGGAACCTAGAAAATTTGGATTCTTTATTGAAGGAAG CATCATCTCAAATCTTCCGGGCTGGGGGCATTGACAGACCATTAATAACTAAGCGTCGATCTAGAATGTGTGTCGGTGTT AGGGCTTCCCATAGATACTTGCTTCCAAATGGGGTTGTTCTGAATGTTAGCAGTTCTGGAGCAACATACTTTATGGAACC CAAAGACGCAATAGATCTGAACAACATGGAAGTTAGGCTTTCGAACTCCGAGAAGGCTGAGGAAAGAGCTATCTTGAGTA TGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAACTATTTATTGGATAGAATTCTTGAGGTTGATCTCGCTTTT GCAAGAGCTGCCTATGCTGGATGGATGAATGGGGTGTGTCCAATTTTTAGTTTAGGTAATTTTGAAGGCTGTGATTCAGT TGAAGAGGATGATGATTTAACAGTAAATATTGATGGTGTACGACATCCATTACTTCTGGAGTCCTCCCTAGAAAAAAATT CAGATAATCTTACAAGATCTGGAAATGTTGCGAAGTTGGGGAATGGAAACGGAGCAGTGGCTTCTACAAATAGACCACAA GGCTTATCAGACTTCCCTGTGCCAGTTGACTTTAAAATTAGACATGGAACTAGAGTGGTGGTGATCTCAGGACCTAATAC TGGAGGGAAAACTGCTTCCATGAAAACATTGGGCCTGGTGTCACTTATGTCAAAGGCTGGAATGCACCTGCCTGCCAAGA ACAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCAGATATTGGAGATCATCAGTCCCTTGAACAAAACCTCTCAACT TTTAGTGGGCACATCTCACGTATTTGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATCGG CAGTGGAACTGATCCATCAGAAGGTGTAGCTCTTTCTACCAGTATCTTACAATATTTAAAGGATCATGTTAACTTGGCTG TTGTGACCACTCATTATGCTGATCTAAGTAATTTGAAGGAAAAGGATACCAGTTTTGACAATGCAGCAATGGAGTTTTCA CTTGAAACATTAGAACCAACTTATAGGATCCTTTGGGGATGTACTGGTGATTCAAATGCCTTAAGCATAGCACAATCTAT TGGCTTCGATAGAAATGTAATTAATCATGCCCAAAAATGGGTAGAGAAGTTAAAACCAGAACAGCAGCAAGAGCGAAGAG GAATACTGTATCAGTCATTGCAGGAGGAAAGAAACCGATTAAAGGCCCAGGCTGAAAAGGCTGCATACATTCATAAAGAA ATCATGGACGTATACCGTGAGATCCAAGGGGAGGCAGAAGACCTTGATAGACGAGAGATGGAACTTATGGCAAAGGAAAC TCAGCAGGTCCAACAAGAGCTAGAGGATGCAAAATCTCAGATGGAAACAACGATACAGAAATTTGAAAAGGAACTCAGAG TCTCTGGGCGTGATAAACTCAATTCACTTATTAGAGAATCTGAATCTGTGATTGCCTCCATTGTAAAATCCCATACTCCT CCTGATAGTTTTCCTGTCAGTGAAGCTGATCACGGTTCATATGCTCCACAATTTGGCGACCAAGTTCGTGTAAAGGGATT GGGAGGGAAATTAGCCACAGTGGTTGAGTTGCCTGGGGATGATGAGGCAATCCTGGTACAGTATGGTAAAGTGAAAGTCC GTGTGAAAAAAAGTAGCATCATAGCTATTCCATCCAGTGCAAAGAATGCTGTAACTAGTTCTTCCACAAATCAGGGGAGG CAGAGTCTGCAGAAAGCACAACACAGGGGTAATTTAGATGTCAACAGCAATGATGATCTTCCATATGGTCCAGTGGTGCG AACATCTAAGAATACTGTGGATCTTCGCGGTATGCGAGTGGAAGAAGCTTCTATCCACCTTGAGATGGCAATTAATGCAA GTCGACCATATTCGGTTCTCTTTGTGATACATGGGATGGGCACTGGCGCTATTAAGGAACGTGCGCTTGAGATCTTACAG AGTCATGCACGTGTTTCTAATTATGAGCCTGAAAATCCAATGAATTATGGTTGTACCATTGCCTATGTCAAGTGA
Protein sequence (LotjaGi4g1v0055400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLSSCNLLFIPAKNPPRFSFKPCFCFNHNSAESNSLQAETLKTLEWSSICKHLSAFTSTSMGSSAANAARLPIGRTPQE SQKLLDQTSAARLVTHPPDFTGIHDLTEILTVAVSGQLLTIPELCTVRRTLTAARELFHNLKHLASASSNPQRYIPLLEI LRNCNFQLDLERKIGFCVDCKLSVILDRASEDLEIIRSERRRNLENLDSLLKEASSQIFRAGGIDRPLITKRRSRMCVGV RASHRYLLPNGVVLNVSSSGATYFMEPKDAIDLNNMEVRLSNSEKAEERAILSMLASEIANSESEINYLLDRILEVDLAF ARAAYAGWMNGVCPIFSLGNFEGCDSVEEDDDLTVNIDGVRHPLLLESSLEKNSDNLTRSGNVAKLGNGNGAVASTNRPQ GLSDFPVPVDFKIRHGTRVVVISGPNTGGKTASMKTLGLVSLMSKAGMHLPAKNSPKLPWFDLILADIGDHQSLEQNLST FSGHISRICKFLEVASKQSLVLIDEIGSGTDPSEGVALSTSILQYLKDHVNLAVVTTHYADLSNLKEKDTSFDNAAMEFS LETLEPTYRILWGCTGDSNALSIAQSIGFDRNVINHAQKWVEKLKPEQQQERRGILYQSLQEERNRLKAQAEKAAYIHKE IMDVYREIQGEAEDLDRREMELMAKETQQVQQELEDAKSQMETTIQKFEKELRVSGRDKLNSLIRESESVIASIVKSHTP PDSFPVSEADHGSYAPQFGDQVRVKGLGGKLATVVELPGDDEAILVQYGKVKVRVKKSSIIAIPSSAKNAVTSSSTNQGR QSLQKAQHRGNLDVNSNDDLPYGPVVRTSKNTVDLRGMRVEEASIHLEMAINASRPYSVLFVIHGMGTGAIKERALEILQ SHARVSNYEPENPMNYGCTIAYVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 871 | 838 | 1.1E-255 | – | |
| PANTHER | 34 | 871 | 838 | 1.1E-255 | ||
| PIRSF | 34 | 904 | 871 | 1.9E-209 | ||
| SMART | 45 | 368 | 324 | 3.5E-4 | ||
| SUPERFAMILY | 100 | 329 | 230 | 6.15E-11 | ||
| Coils | 197 | 217 | 21 | - | – | |
| MobiDBLite | 377 | 399 | 23 | - | – | |
| Gene3D | 396 | 694 | 299 | 3.6E-67 | – | |
| SUPERFAMILY | 403 | 605 | 203 | 5.08E-35 | ||
| SMART | 417 | 602 | 186 | 1.3E-58 | ||
| Pfam | 421 | 604 | 184 | 1.3E-33 | ||
| ProSitePatterns | 499 | 515 | 17 | - | ||
| Coils | 617 | 637 | 21 | - | – | |
| Coils | 645 | 691 | 47 | - | – | |
| MobiDBLite | 787 | 814 | 28 | - | – | |
| MobiDBLite | 787 | 821 | 35 | - | – | |
| Gene3D | 825 | 904 | 80 | 5.3E-12 | – | |
| SMART | 830 | 904 | 75 | 1.4E-11 | ||
| SUPERFAMILY | 831 | 903 | 73 | 5.1E-7 | ||
| ProSiteProfiles | 833 | 904 | 72 | 17.091 | ||
| Pfam | 833 | 903 | 71 | 1.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Mismatch repair | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | Mismatched DNA binding | Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. | ||
| Biological process | Negative regulation of DNA recombination | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination. |
Expression pattern of LotjaGi4g1v0055400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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