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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000157
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We have found 478 results. Now displaying 5 of 10 with 50 rows per page. This search has taken 6.342s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2666490.1
n.a. Nbs-lrr resistance protein [Medicago truncatula] gi|357513731|ref|XP_003627154.1| chr3 32561159 32568241 -
6 domain predictions
2 GO terms
Lj3g3v2668580.1
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357513703|ref|XP_003627140.1| chr3 32595186 32597923 -
6 domain predictions
2 GO terms
Lj4g3v0473020.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356524112|ref|XP_003530676.1| chr4 7128465 7130705 +
6 domain predictions
2 GO terms
Lj4g3v0473030.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502155042|ref|XP_004509939.1| chr4 7128465 7130856 +
6 domain predictions
2 GO terms
Lj4g3v1034190.1
n.a. TIR-NBS-LRR type disease resistance protein [Glycine max] gi|351722793|ref|NP_001237768.1| chr4 14630410 14631247 -
6 domain predictions
2 GO terms
Lj4g3v2973590.1
n.a. Disease resistance protein (TIR-NBS class) [Theobroma cacao] gi|508726884|gb|EOY18781.1| chr4 39315754 39320342 +
2 domain predictions
2 GO terms
Lj4g3v3099550.1
n.a. disease resistance protein [Phaseolus vulgaris] gi|74231152|gb|ABA00702.1| chr4 41315105 41320386 -
6 domain predictions
2 GO terms
Lj4g3v3099550.3
n.a. disease resistance protein [Phaseolus vulgaris] gi|74231152|gb|ABA00702.1| chr4 41315105 41320386 -
6 domain predictions
2 GO terms
Lj5g3v0089470.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356545124|ref|XP_003540995.1| chr5 660669 670778 -
6 domain predictions
2 GO terms
Lj5g3v0208080.1
n.a. Disease resistance-like protein GS0-1 [Medicago truncatula] gi|357494437|ref|XP_003617507.1| chr5 1890184 1894654 +
6 domain predictions
2 GO terms
Lj5g3v0208090.1
n.a. n.a. chr5 1892181 1895349 -
6 domain predictions
2 GO terms
Lj5g3v0875650.1
n.a. NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|357515077|ref|XP_003627827.1| chr5 12748785 12757034 +
6 domain predictions
2 GO terms
Lj6g3v0931320.1
n.a. Disease resistance-like protein GS4-1 [Medicago truncatula] gi|357449965|ref|XP_003595259.1| chr6 10255127 10256954 -
3 domain predictions
2 GO terms
Lj6g3v0936950.1
n.a. Disease resistance-like protein GS4-1 [Medicago truncatula] gi|357449965|ref|XP_003595259.1| chr6 10446728 10450967 +
6 domain predictions
2 GO terms
Lj6g3v0936950.2
n.a. Disease resistance-like protein GS4-1 [Medicago truncatula] gi|357449965|ref|XP_003595259.1| chr6 10446728 10450967 +
6 domain predictions
2 GO terms
Lj6g3v1038830.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356497765|ref|XP_003517729.1| chr6 11632358 11644294 -
6 domain predictions
2 GO terms
Lj6g3v1601950.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356545124|ref|XP_003540995.1| chr6 18036007 18043589 -
6 domain predictions
2 GO terms
LotjaGi1g1v0027700_LC.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72860.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072UFA3|A0A072UFA3_MEDTR NB-ARC domain protein; Found in the gene: LotjaGi1g1v0027700_LC LjG1.1_chr1 3361124 3365259 -
4 domain predictions
2 GO terms
LotjaGi1g1v0027700_LC.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G12010.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H3|G7K8H3_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0027700_LC LjG1.1_chr1 3361124 3365259 -
4 domain predictions
2 GO terms
LotjaGi1g1v0027700_LC.3
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72860.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8G5|G7K8G5_MEDTR NB-ARC domain protein; Found in the gene: LotjaGi1g1v0027700_LC LjG1.1_chr1 3361735 3365205 -
4 domain predictions
2 GO terms
LotjaGi1g1v0031500.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|C6ZS32|C6ZS32_SOYBN Toll interleukin receptor; Found in the gene: LotjaGi1g1v0031500 LjG1.1_chr1 4032199 4034307 +
4 domain predictions
2 GO terms
LotjaGi1g1v0031600.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|F4JNB7|RPP5_ARATH Disease resistance protein RPP5; TrEMBL-Plants: tr|A0A0R4J566|A0A0R4J566_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0031600 LjG1.1_chr1 4047589 4056260 +
4 domain predictions
2 GO terms
LotjaGi1g1v0032000.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|C6ZS32|C6ZS32_SOYBN Toll interleukin receptor; Found in the gene: LotjaGi1g1v0032000 LjG1.1_chr1 4087607 4090277 +
4 domain predictions
2 GO terms
LotjaGi1g1v0032100.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8I9|G7K8I9_MEDTR Toll/interleukin-like receptor-protein; Found in the gene: LotjaGi1g1v0032100 LjG1.1_chr1 4090846 4095286 +
4 domain predictions
2 GO terms
LotjaGi1g1v0032300.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0R4J566|A0A0R4J566_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0032300 LjG1.1_chr1 4129927 4132920 +
4 domain predictions
2 GO terms
LotjaGi1g1v0032400.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27170.1 transmembrane receptors / ATP binding protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0032400 LjG1.1_chr1 4139845 4146370 +
4 domain predictions
2 GO terms
LotjaGi1g1v0032500.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3T873|I3T873_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0032500 LjG1.1_chr1 4148651 4151118 +
4 domain predictions
2 GO terms
LotjaGi1g1v0032900.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8G5|G7K8G5_MEDTR NB-ARC domain protein; Found in the gene: LotjaGi1g1v0032900 LjG1.1_chr1 4203609 4207284 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033000.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033000 LjG1.1_chr1 4207492 4210218 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033200.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K3J1|G7K3J1_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0033200 LjG1.1_chr1 4268523 4274075 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033200.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K3J1|G7K3J1_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0033200 LjG1.1_chr1 4271056 4274067 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033300.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033300 LjG1.1_chr1 4341975 4344907 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033300.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033300 LjG1.1_chr1 4347609 4351828 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033400.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033400 LjG1.1_chr1 4356656 4364497 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033600.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033600 LjG1.1_chr1 4368696 4373317 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033600.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033600 LjG1.1_chr1 4368696 4373317 -
4 domain predictions
2 GO terms
LotjaGi1g1v0033700.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033700 LjG1.1_chr1 4391282 4394925 -
4 domain predictions
2 GO terms
LotjaGi1g1v0038200.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27170.1 transmembrane receptors / ATP binding protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H1|G7K8H1_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0038200 LjG1.1_chr1 5319954 5326481 -
4 domain predictions
2 GO terms
LotjaGi1g1v0038200.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27170.1 transmembrane receptors / ATP binding protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H1|G7K8H1_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0038200 LjG1.1_chr1 5320016 5326412 -
4 domain predictions
2 GO terms
LotjaGi1g1v0038600_LC.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G17615.1 Disease resistance protein (TIR-NBS class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3SQQ4|I3SQQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0038600_LC LjG1.1_chr1 5357530 5363335 +
4 domain predictions
2 GO terms
LotjaGi1g1v0038800_LC.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72890.1 Disease resistance protein (TIR-NBS class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|V7BBN7|V7BBN7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0038800_LC LjG1.1_chr1 5395854 5397113 +
3 domain predictions
2 GO terms
LotjaGi1g1v0039200_LC.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G38850.1 Disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H3|G7K8H3_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0039200_LC LjG1.1_chr1 5455244 5464706 +
4 domain predictions
2 GO terms
LotjaGi1g1v0039200_LC.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G38850.1 Disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H3|G7K8H3_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0039200_LC LjG1.1_chr1 5462676 5464710 +
4 domain predictions
2 GO terms
LotjaGi1g1v0039300_LC.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G12010.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H3|G7K8H3_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0039300_LC LjG1.1_chr1 5468224 5475182 +
4 domain predictions
2 GO terms
LotjaGi1g1v0039700_LC.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3SQQ4|I3SQQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0039700_LC LjG1.1_chr1 5516343 5525749 +
4 domain predictions
2 GO terms
LotjaGi1g1v0044800.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7KBB2|K7KBB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0044800 LjG1.1_chr1 6082519 6094228 -
4 domain predictions
2 GO terms
LotjaGi1g1v0045000_LC.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K3B3|G7K3B3_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0045000_LC LjG1.1_chr1 6114305 6118120 +
4 domain predictions
2 GO terms
LotjaGi1g1v0045000_LC.2
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7KBB2|K7KBB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0045000_LC LjG1.1_chr1 6114305 6118120 +
4 domain predictions
2 GO terms
LotjaGi1g1v0045000_LC.5
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K3B3|G7K3B3_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0045000_LC LjG1.1_chr1 6114313 6117992 +
4 domain predictions
2 GO terms
LotjaGi1g1v0045100.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0B2S2J6|A0A0B2S2J6_GLYSO TMV resistance protein N; Found in the gene: LotjaGi1g1v0045100 LjG1.1_chr1 6127841 6133448 +
4 domain predictions
2 GO terms