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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003959
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We have found 436 results. Now displaying 4 of 9 with 50 rows per page. This search has taken 6.633s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1358170.3
n.a. Cell division protease ftsH-like protein [Medicago truncatula] gi|357441419|ref|XP_003590987.1| chr5 20730067 20743349 +
2 domain predictions
1 GO term
Lj5g3v1641080.1
n.a. Katanin p60 ATPase-containing subunit [Medicago truncatula] gi|357442551|ref|XP_003591553.1| chr5 23681436 23686770 -
2 domain predictions
1 GO term
Lj5g3v1641080.2
n.a. Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|357442557|ref|XP_003591556.1| chr5 23681436 23685633 -
2 domain predictions
1 GO term
Lj5g3v2169490.1
n.a. PREDICTED: origin recognition complex subunit 4-like [Cicer arietinum] gi|502120583|ref|XP_004497011.1| chr5 31114360 31118383 +
2 domain predictions
1 GO term
Lj5g3v2239740.1
n.a. PREDICTED: 26S protease regulatory subunit 10B homolog A-like isoform 2 [Glycine max] gi|356551906|ref|XP_003544313.1| chr5 32151053 32156238 +
2 domain predictions
1 GO term
Lj5g3v2300310.1
n.a. PREDICTED: probable mitochondrial chaperone BCS1-B-like [Glycine max] gi|356538238|ref|XP_003537611.1| chr5 34000150 34006798 -
2 domain predictions
1 GO term
Lj6g3v0519440.1
n.a. Chaperone protein clpB [Medicago truncatula] gi|357461271|ref|XP_003600917.1| chr6 5003765 5009513 -
2 domain predictions
1 GO term
Lj6g3v1051220.1
n.a. Mitochondrial chaperone BCS1 [Medicago truncatula] gi|357496301|ref|XP_003618439.1| chr6 11968928 11969845 -
2 domain predictions
1 GO term
Lj6g3v1382270.1
n.a. ATP-dependent zinc metalloprotease FTSH 8, chloroplastic-like [Glycine max] gi|359806106|ref|NP_001241188.1| chr6 16470616 16481398 +
2 domain predictions
1 GO term
Lj6g3v1527000.1
n.a. PREDICTED: mitochondrial chaperone BCS1-like [Glycine max] gi|356496707|ref|XP_003517207.1| chr6 17625323 17626789 +
2 domain predictions
1 GO term
Lj6g3v1791970.1
n.a. PREDICTED: katanin p60 ATPase-containing subunit A1-like [Cicer arietinum] gi|502079223|ref|XP_004486193.1| chr6 20103993 20114109 +
2 domain predictions
1 GO term
Lj6g3v1791970.2
n.a. PREDICTED: katanin p60 ATPase-containing subunit A1-like [Cicer arietinum] gi|502079223|ref|XP_004486193.1| chr6 20103993 20114109 +
2 domain predictions
1 GO term
LotjaGi1g1v0004000.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757210 759149 +
2 domain predictions
1 GO term
LotjaGi1g1v0004000.2
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|G7KFD2|G7KFD2_MEDTR AAA family ATPase; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757213 758934 +
2 domain predictions
1 GO term
LotjaGi1g1v0088000.1
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; TrEMBL-Plants: tr|A0A0S3RKS8|A0A0S3RKS8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088000 LjG1.1_chr1 12770360 12775326 +
2 domain predictions
1 GO term
LotjaGi1g1v0088000.2
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic; TrEMBL-Plants: tr|I1M841|I1M841_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088000 LjG1.1_chr1 12771597 12774100 +
2 domain predictions
1 GO term
LotjaGi1g1v0088000.3
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; TrEMBL-Plants: tr|G7KGT1|G7KGT1_MEDTR Ribulose bisphosphate carboxylase/oxygenase activase; Found in the gene: LotjaGi1g1v0088000 LjG1.1_chr1 12771597 12774656 +
2 domain predictions
1 GO term
LotjaGi1g1v0088000.4
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|I1M841|I1M841_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088000 LjG1.1_chr1 12771666 12774198 +
2 domain predictions
1 GO term
LotjaGi1g1v0088000.5
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic; TrEMBL-Plants: tr|I1M841|I1M841_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088000 LjG1.1_chr1 12771672 12774656 +
2 domain predictions
1 GO term
LotjaGi1g1v0119900.1
n.a. Chaperone protein clpB; TAIR: AT1G07200.2 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LML2|SMXL6_ARATH Protein SMAX1-LIKE 6; TrEMBL-Plants: tr|V7B9G8|V7B9G8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0119900 LjG1.1_chr1 18946294 18957283 -
2 domain predictions
1 GO term
LotjaGi1g1v0119900.2
n.a. Chaperone protein clpB; TAIR: AT1G07200.2 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LML2|SMXL6_ARATH Protein SMAX1-LIKE 6; TrEMBL-Plants: tr|A0A0B2SPH1|A0A0B2SPH1_GLYSO Putative chaperone protein ClpB 1; Found in the gene: LotjaGi1g1v0119900 LjG1.1_chr1 18946294 18957283 -
2 domain predictions
1 GO term
LotjaGi1g1v0122800.1
n.a. ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT5G58870.1 FTSH protease 9; Swiss-Prot: sp|Q9FIM2|FTSH9_ARATH ATP-dependent zinc metalloprotease FTSH 9, chloroplastic; TrEMBL-Plants: tr|I1MB96|I1MB96_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0122800 LjG1.1_chr1 19471361 19480713 -
2 domain predictions
1 GO term
LotjaGi1g1v0171800.1
n.a. ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT5G53170.1 FTSH protease 11; Swiss-Prot: sp|Q9FGM0|FTSHB_ARATH ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TYS4|A0A151TYS4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0171800 LjG1.1_chr1 32743968 32759240 +
2 domain predictions
1 GO term
LotjaGi1g1v0171800.2
n.a. ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT5G53170.1 FTSH protease 11; Swiss-Prot: sp|Q9FGM0|FTSHB_ARATH ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TYS4|A0A151TYS4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0171800 LjG1.1_chr1 32744006 32758431 +
2 domain predictions
1 GO term
LotjaGi1g1v0177300.1
n.a. Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 LjG1.1_chr1 34042319 34052571 -
2 domain predictions
1 GO term
LotjaGi1g1v0177300.2
n.a. Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 LjG1.1_chr1 34046551 34051197 -
2 domain predictions
1 GO term
LotjaGi1g1v0177300.3
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 LjG1.1_chr1 34046580 34048562 -
2 domain predictions
1 GO term
LotjaGi1g1v0177300.4
n.a. Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 LjG1.1_chr1 34046580 34051200 -
2 domain predictions
1 GO term
LotjaGi1g1v0177300.5
n.a. Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 LjG1.1_chr1 34046580 34051264 -
2 domain predictions
1 GO term
LotjaGi1g1v0177300.6
n.a. Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 LjG1.1_chr1 34046580 34051422 -
2 domain predictions
1 GO term
LotjaGi1g1v0177300.7
n.a. Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 LjG1.1_chr1 34046580 34051467 -
2 domain predictions
1 GO term
LotjaGi1g1v0197900.1
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G24710.3 pachytene checkpoint-like protein; Swiss-Prot: sp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog; TrEMBL-Plants: tr|G7J4A8|G7J4A8_MEDTR Thyroid receptor-interacting protein; Found in the gene: LotjaGi1g1v0197900 LjG1.1_chr1 40983413 40990995 +
2 domain predictions
1 GO term
LotjaGi1g1v0197900.2
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G24710.3 pachytene checkpoint-like protein; Swiss-Prot: sp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog; TrEMBL-Plants: tr|G7J4A8|G7J4A8_MEDTR Thyroid receptor-interacting protein; Found in the gene: LotjaGi1g1v0197900 LjG1.1_chr1 40983553 40990697 +
2 domain predictions
1 GO term
LotjaGi1g1v0237900.1
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7KL59|K7KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237900 LjG1.1_chr1 56661786 56682964 +
2 domain predictions
1 GO term
LotjaGi1g1v0237900.2
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7KL59|K7KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237900 LjG1.1_chr1 56662069 56681815 +
2 domain predictions
1 GO term
LotjaGi1g1v0237900.3
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7KL59|K7KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237900 LjG1.1_chr1 56662073 56681815 +
2 domain predictions
1 GO term
LotjaGi1g1v0237900.4
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7KL59|K7KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237900 LjG1.1_chr1 56662325 56681815 +
2 domain predictions
1 GO term
LotjaGi1g1v0237900.5
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7KL59|K7KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237900 LjG1.1_chr1 56662985 56681815 +
2 domain predictions
1 GO term
LotjaGi1g1v0261200.1
n.a. Replication factor C subunit; TAIR: AT1G77470.1 replication factor C subunit 3; Swiss-Prot: sp|Q6YZ54|RFC3_ORYSJ Replication factor C subunit 3; TrEMBL-Plants: tr|A0A0B2QNG7|A0A0B2QNG7_GLYSO Replication factor C subunit 5; Found in the gene: LotjaGi1g1v0261200 LjG1.1_chr1 63940846 63947349 -
2 domain predictions
1 GO term
LotjaGi1g1v0264700.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q93ZX1|RFC4_ARATH Replication factor C subunit 4; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 LjG1.1_chr1 64737031 64747848 -
2 domain predictions
1 GO term
LotjaGi1g1v0264700.2
n.a. Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 LjG1.1_chr1 64737127 64747949 -
2 domain predictions
1 GO term
LotjaGi1g1v0264700.3
n.a. Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 LjG1.1_chr1 64737533 64747684 -
2 domain predictions
1 GO term
LotjaGi1g1v0286700.1
n.a. ATP-dependent Clp protease ATP-binding subunit clpX; TAIR: AT5G53350.1 CLP protease regulatory subunit X; Swiss-Prot: sp|Q9FK07|CLPX1_ARATH CLP protease regulatory subunit CLPX1, mitochondrial; TrEMBL-Plants: tr|A0A0S3RDV9|A0A0S3RDV9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0286700 LjG1.1_chr1 69583512 69591979 +
2 domain predictions
1 GO term
LotjaGi1g1v0292500.1
n.a. AAA-ATPase 1; TAIR: AT4G27680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein 1-A; TrEMBL-Plants: tr|I3TAQ1|I3TAQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0292500 LjG1.1_chr1 70963084 70973747 -
2 domain predictions
1 GO term
LotjaGi1g1v0292500.2
n.a. AAA-ATPase 1; TAIR: AT4G27680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein 1-A; TrEMBL-Plants: tr|I3TAQ1|I3TAQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0292500 LjG1.1_chr1 70963084 70973747 -
2 domain predictions
1 GO term
LotjaGi1g1v0292500.3
n.a. AAA-ATPase 1; TAIR: AT4G27680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein 1-A; TrEMBL-Plants: tr|I3TAQ1|I3TAQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0292500 LjG1.1_chr1 70963284 70973670 -
2 domain predictions
1 GO term
LotjaGi1g1v0292500.4
n.a. AAA-ATPase 1; TAIR: AT4G27680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein 1-A; TrEMBL-Plants: tr|I3TAQ1|I3TAQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0292500 LjG1.1_chr1 70964645 70973501 -
2 domain predictions
1 GO term
LotjaGi1g1v0292500.5
n.a. ATP-dependent zinc metalloprotease FtsH 2; TAIR: AT4G27680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein 1-A; TrEMBL-Plants: tr|I3TAQ1|I3TAQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0292500 LjG1.1_chr1 70964645 70973501 -
2 domain predictions
1 GO term
LotjaGi1g1v0318200.1
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G64580.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4KF14|FTSI4_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic; TrEMBL-Plants: tr|V7AVN6|V7AVN6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0318200 LjG1.1_chr1 76641329 76651484 -
2 domain predictions
1 GO term
LotjaGi1g1v0318200.2
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G64580.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4KF14|FTSI4_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic; TrEMBL-Plants: tr|V7AVN6|V7AVN6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0318200 LjG1.1_chr1 76642526 76650809 -
2 domain predictions
1 GO term