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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009057
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 1036 results. Now displaying 5 of 21 with 50 rows per page. This search has taken 5.659s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4350060.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max] gi|356530687|ref|XP_003533912.1| chr1 51143540 51145985 +
3 domain predictions
1 GO term
Lj1g3v4483810.1
n.a. PREDICTED: myb-related protein Myb4-like [Glycine max] gi|356505017|ref|XP_003521289.1| chr1 52671270 52673484 +
3 domain predictions
1 GO term
Lj1g3v4515910.1
n.a. Two-component response regulator ARR [Medicago truncatula] gi|357510131|ref|XP_003625354.1| chr1 53138045 53144475 -
3 domain predictions
1 GO term
Lj1g3v4593270.1
n.a. R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330306|gb|AFK29431.1| chr1 55039665 55041688 -
3 domain predictions
1 GO term
Lj1g3v4693000.1
n.a. Homeobox-leucine zipper protein ATHB-22 [Medicago truncatula] gi|357440243|ref|XP_003590399.1| chr1 55752367 55758344 -
3 domain predictions
1 GO term
Lj1g3v4752480.1
n.a. PREDICTED: BEL1-like homeodomain protein 1-like [Glycine max] gi|356505435|ref|XP_003521496.1| chr1 56710030 56715333 +
3 domain predictions
1 GO term
Lj1g3v4809890.1
n.a. PREDICTED: transcription factor MYB86-like [Cicer arietinum] gi|502117411|ref|XP_004495813.1| chr1 58090605 58092671 +
3 domain predictions
1 GO term
Lj1g3v4830110.1
n.a. MYB transcription factor MYB64 [Glycine max] gi|363808294|ref|NP_001242243.1| chr1 58252672 58254986 -
3 domain predictions
1 GO term
Lj1g3v4831860.1
n.a. PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| chr1 58562860 58566810 +
3 domain predictions
1 GO term
Lj1g3v4863050.1
n.a. MYB-related protein [Lotus japonicus] gi|154425468|dbj|BAF74782.1| chr1 58912991 58916537 +
3 domain predictions
1 GO term
Lj1g3v4913230.1
n.a. Uncharacterized protein TCM_004570 [Theobroma cacao] gi|508703096|gb|EOX94992.1| chr1 59464684 59470650 +
2 domain predictions
1 GO term
Lj1g3v4915280.1
n.a. PREDICTED: homeobox protein LUMINIDEPENDENS-like [Glycine max] gi|356570954|ref|XP_003553647.1| chr1 59493941 59502816 -
3 domain predictions
1 GO term
Lj1g3v4915280.2
n.a. PREDICTED: homeobox protein LUMINIDEPENDENS-like isoform X1 [Cicer arietinum] gi|502112497|ref|XP_004494350.1| chr1 59495678 59502816 -
3 domain predictions
1 GO term
Lj1g3v4931150.1
n.a. Uncharacterized protein TCM_026631 [Theobroma cacao] gi|508719566|gb|EOY11463.1| chr1 59870682 59875533 -
2 domain predictions
1 GO term
Lj1g3v4998480.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502113704|ref|XP_004494732.1| chr1 60806217 60810231 +
3 domain predictions
1 GO term
Lj1g3v4999560.1
n.a. PREDICTED: cell division cycle 5-like protein-like [Cicer arietinum] gi|502113713|ref|XP_004494735.1| chr1 60845809 60851473 +
3 domain predictions
1 GO term
Lj2g3v0286940.1
n.a. PREDICTED: transcription factor LAF1-like [Glycine max] gi|356559815|ref|XP_003548192.1| chr2 4867539 4871035 +
3 domain predictions
1 GO term
Lj2g3v0286950.1
n.a. PREDICTED: transcription factor LAF1-like [Glycine max] gi|356559815|ref|XP_003548192.1| chr2 4870042 4871324 +
3 domain predictions
1 GO term
Lj2g3v0320640.1
n.a. PREDICTED: transcription factor WER-like [Vitis vinifera] gi|359491528|ref|XP_002279128.2| chr2 5367442 5368750 -
3 domain predictions
1 GO term
Lj2g3v0621850.2
n.a. MYB transcription factor MYB131 [Glycine max] gi|110931850|gb|ABH02924.1| chr2 8857474 8861062 -
3 domain predictions
1 GO term
Lj2g3v0632800.1
n.a. PREDICTED: transcription factor WER-like [Glycine max] gi|356529453|ref|XP_003533306.1| chr2 9386407 9396679 +
3 domain predictions
1 GO term
Lj2g3v0635660.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Cucumis sativus] gi|449439493|ref|XP_004137520.1| chr2 9827043 9827940 +
3 domain predictions
1 GO term
Lj2g3v0636680.1
n.a. PREDICTED: transcription repressor KAN1-like [Cicer arietinum] gi|502164944|ref|XP_004513340.1| chr2 10227063 10237509 +
3 domain predictions
1 GO term
Lj2g3v0636680.2
n.a. PREDICTED: transcription repressor KAN1-like [Cicer arietinum] gi|502164944|ref|XP_004513340.1| chr2 10227063 10237509 +
3 domain predictions
1 GO term
Lj2g3v0661590.1
n.a. NARROW ORGAN 1 [Lotus japonicus] gi|402575786|gb|AFQ69083.1| chr2 10725225 10727410 +
3 domain predictions
1 GO term
Lj2g3v0743120.1
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max] gi|356529585|ref|XP_003533370.1| chr2 11760503 11763394 -
2 domain predictions
1 GO term
Lj2g3v0780580.1
n.a. Two-component response regulator ARR1 [Medicago truncatula] gi|357483025|ref|XP_003611799.1| chr2 12486314 12488285 -
3 domain predictions
1 GO term
Lj2g3v0906460.1
n.a. transcription factor MYBJ6 [Glycine max] gi|351721498|ref|NP_001237467.1| chr2 13738820 13740223 +
3 domain predictions
1 GO term
Lj2g3v0911840.1
n.a. PREDICTED: transcription factor MYB1R1 [Glycine max] gi|356513215|ref|XP_003525309.1| chr2 13932863 13934495 +
3 domain predictions
1 GO term
Lj2g3v0949390.1
n.a. Myb protein [Medicago truncatula] gi|357504247|ref|XP_003622412.1| chr2 15075561 15078350 -
3 domain predictions
1 GO term
Lj2g3v1014360.1
n.a. Homeodomain-like [Medicago truncatula] gi|87240806|gb|ABD32664.1| chr2 15586011 15586829 +
2 domain predictions
1 GO term
Lj2g3v1014380.1
n.a. transcription factor Homeobox [Lotus japonicus] gi|193237555|dbj|BAG50054.1| chr2 15594929 15597583 +
3 domain predictions
1 GO term
Lj2g3v1034880.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT7-like [Cicer arietinum] gi|502090912|ref|XP_004489381.1| chr2 16639142 16641839 -
3 domain predictions
1 GO term
Lj2g3v1058060.1
n.a. MYB transcription factor MYB53 [Glycine max] gi|110931810|gb|ABH02904.1| chr2 16797380 16797955 +
3 domain predictions
1 GO term
Lj2g3v1068470.1
n.a. MIXTA-like transcription factor [Lotus japonicus] gi|346425851|gb|AEO27486.1| chr2 17036010 17038467 +
3 domain predictions
1 GO term
Lj2g3v1068520.1
n.a. PREDICTED: transcription factor MYB90-like isoform X1 [Cicer arietinum] gi|502091015|ref|XP_004489414.1| chr2 17117044 17117745 +
3 domain predictions
1 GO term
Lj2g3v1068540.1
n.a. PREDICTED: transcription factor MYB113 [Glycine max] gi|356573506|ref|XP_003554899.1| chr2 17120160 17120663 +
3 domain predictions
1 GO term
Lj2g3v1079520.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr2 17544243 17546166 -
3 domain predictions
1 GO term
Lj2g3v1168830.1
n.a. MYB-type transcription factor [Lotus japonicus] gi|283132363|dbj|BAI63587.1| chr2 18447738 18450177 -
3 domain predictions
1 GO term
Lj2g3v1277750.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502143659|ref|XP_004505417.1| chr2 20438190 20439795 +
3 domain predictions
1 GO term
Lj2g3v1316330.1
n.a. Homeobox-leucine zipper protein [Medicago truncatula] gi|357486709|ref|XP_003613642.1| chr2 20802825 20805428 +
3 domain predictions
1 GO term
Lj2g3v1326410.1
n.a. Myb-related protein B [Medicago truncatula] gi|357486695|ref|XP_003613635.1| chr2 20839963 20846199 +
3 domain predictions
1 GO term
Lj2g3v1327450.1
n.a. Homeobox-leucine zipper protein [Medicago truncatula] gi|357486709|ref|XP_003613642.1| chr2 20866757 20868800 +
3 domain predictions
1 GO term
Lj2g3v1349130.1
n.a. homeodomain leucine zipper protein HDZ2 [Phaseolus vulgaris] gi|15148918|gb|AAK84886.1|AF402605_1 chr2 21156577 21158659 +
3 domain predictions
1 GO term
Lj2g3v1364760.1
n.a. MYB transcription factor MYB138 [Glycine max] gi|351722587|ref|NP_001237761.1| chr2 21371025 21372927 +
3 domain predictions
1 GO term
Lj2g3v1414960.1
n.a. PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5-like [Cucumis sativus] gi|449441830|ref|XP_004138685.1| chr2 22230521 22232156 +
2 domain predictions
1 GO term
Lj2g3v1415210.1
n.a. Knotted-1 homeobox protein [Caragana korshinskii] gi|480328047|gb|AGJ83725.1| chr2 22341905 22348536 +
3 domain predictions
1 GO term
Lj2g3v1439670.1
n.a. PREDICTED: ZF-HD homeobox protein At5g65410-like [Cicer arietinum] gi|502092759|ref|XP_004489767.1| chr2 22780394 22781703 +
3 domain predictions
1 GO term
Lj2g3v1468090.1
n.a. homeodomain-like superfamily protein [Arabidopsis thaliana] gi|15231815|ref|NP_190912.1| chr2 23317473 23319775 -
2 domain predictions
1 GO term
Lj2g3v1468350.1
n.a. PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5-like [Cucumis sativus] gi|449441830|ref|XP_004138685.1| chr2 23428524 23429806 -
2 domain predictions
1 GO term