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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • IPR011011
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We have found 346 results. Now displaying 6 of 7 with 50 rows per page. This search has taken 6.218s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. Histone acetyltransferase; TAIR: AT1G16710.10 histone acetyltransferase of the CBP family 12; Swiss-Prot: sp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC12; TrEMBL-Plants: tr|I1KG14|I1KG14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0338000 LjG1.1_chr3 71043838 71056349 +
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr|A0A151SIL1|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900 LjG1.1_chr3 79460910 79470626 -
n.a. 1-phosphatidylinositol-3-phosphate 5-kinase; TAIR: AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein; Swiss-Prot: sp|Q9LUM0|FAB1B_ARATH 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B; TrEMBL-Plants: tr|A0A0B2NWD6|A0A0B2NWD6_GLYSO 1-phosphatidylinositol-3-phosphate 5-kinase FAB1; Found in the gene: LotjaGi3g1v0408200 LjG1.1_chr3 81156327 81167287 -
n.a. AT-rich interactive domain protein; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|V7AT26|V7AT26_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0408800 LjG1.1_chr3 81227100 81236024 -
n.a. AT-rich interactive domain-containing protein 4; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|I1MK64|I1MK64_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0408800 LjG1.1_chr3 81227732 81231223 -
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433668 82437856 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433900 82437269 +
n.a. Nucleosome-remodeling factor subunit BPTF; TAIR: AT5G22760.1 PHD finger family protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A1J7GFU1|A0A1J7GFU1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481400 LjG1.1_chr3 89906343 89917116 +
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT2G27980.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A0L9V6F0|A0A0L9V6F0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483700 LjG1.1_chr3 90113337 90119103 +
n.a. Nucleosome-remodeling factor subunit; TAIR: AT5G12400.1 PHD-finger and DNA binding domain-containing protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A0B2PNJ8|A0A0B2PNJ8_GLYSO Nucleosome-remodeling factor subunit NURF301; Found in the gene: LotjaGi3g1v0534700 LjG1.1_chr3 95147987 95168379 +
n.a. Nucleosome-remodeling factor subunit; TAIR: AT5G12400.1 PHD-finger and DNA binding domain-containing protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|K7LNU7|K7LNU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0534700 LjG1.1_chr3 95148152 95168025 +
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B; TrEMBL-Plants: tr|A0A0S3SEH2|A0A0S3SEH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0539400 LjG1.1_chr3 95661596 95669355 +
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT5G16680.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A; TrEMBL-Plants: tr|A0A0R0HFP0|A0A0R0HFP0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0539400 LjG1.1_chr3 95661665 95669476 +
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT5G16680.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B; TrEMBL-Plants: tr|I1LJ47|I1LJ47_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0539400 LjG1.1_chr3 95661703 95669361 +
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G08020.1 PHD finger family protein; Swiss-Prot: sp|Q9UMN6|KMT2B_HUMAN Histone-lysine N-methyltransferase 2B; TrEMBL-Plants: tr|A0A072UJ97|A0A072UJ97_MEDTR RING/FYVE/PHD zinc finger protein, putative; Found in the gene: LotjaGi3g1v0550400 LjG1.1_chr3 96726379 96733625 -
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G08020.1 PHD finger family protein; Swiss-Prot: sp|Q9UMN6|KMT2B_HUMAN Histone-lysine N-methyltransferase 2B; TrEMBL-Plants: tr|A0A072UJ97|A0A072UJ97_MEDTR RING/FYVE/PHD zinc finger protein, putative; Found in the gene: LotjaGi3g1v0550500 LjG1.1_chr3 96735608 96742967 -
n.a. PHD finger protein family; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420; TrEMBL-Plants: tr|A0A151TNX9|A0A151TNX9_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0555100 LjG1.1_chr3 97269032 97276861 -
n.a. PHD finger alfin-like protein; TAIR: AT2G02470.1 alfin-like 6; Swiss-Prot: sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1; TrEMBL-Plants: tr|K7L425|K7L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002700 LjG1.1_chr4 590705 594495 -
n.a. Chromodomain-helicase-DNA-binding family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|K7KPZ4|K7KPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0022000 LjG1.1_chr4 2675963 2693714 -
n.a. FYVE zinc finger protein; TAIR: AT1G61690.1 phosphoinositide binding protein; Swiss-Prot: sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine kinase substrate; TrEMBL-Plants: tr|A0A0R0JB68|A0A0R0JB68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0046000 LjG1.1_chr4 5393504 5400800 +
n.a. FYVE zinc finger protein; TAIR: AT1G61690.1 phosphoinositide binding protein; Swiss-Prot: sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine kinase substrate; TrEMBL-Plants: tr|A0A0R0JB68|A0A0R0JB68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0046000 LjG1.1_chr4 5393637 5400736 +
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7L9S7|K7L9S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0185000 LjG1.1_chr4 40595021 40625396 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45781405 45791244 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45781405 45791244 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45782265 45791225 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45782454 45791247 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45782552 45791120 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198800_LC LjG1.1_chr4 45817382 45826821 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT4G14920.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198800_LC LjG1.1_chr4 45820201 45824004 -
n.a. RING/U-box protein; TAIR: AT3G05670.1 RING/U-box protein; Swiss-Prot: sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1; TrEMBL-Plants: tr|A0A072UQF4|A0A072UQF4_MEDTR PHD-finger protein, putative; Found in the gene: LotjaGi4g1v0257700 LjG1.1_chr4 61318075 61321452 -
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 LjG1.1_chr4 64882147 64886907 -
n.a. Pathogenesis-related homeodomain protein; TAIR: AT4G29940.1 pathogenesis related homeodomain protein A; Swiss-Prot: sp|P48785|PRH_ARATH Pathogenesis-related homeodomain protein; TrEMBL-Plants: tr|A0A151SRV5|A0A151SRV5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0305500 LjG1.1_chr4 68116190 68121628 +
n.a. DNA-binding protein; TAIR: AT1G09520.1 hypothetical protein; Swiss-Prot: sp|O15344|TRI18_HUMAN E3 ubiquitin-protein ligase Midline-1; TrEMBL-Plants: tr|I1LYE7|I1LYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0316700 LjG1.1_chr4 69414915 69416648 +
n.a. Ankyrin repeat domain-containing protein; TAIR: AT2G26210.1 Ankyrin repeat family protein; Swiss-Prot: sp|P40343|VPS27_YEAST Vacuolar protein sorting-associated protein 27; TrEMBL-Plants: tr|I3SWL3|I3SWL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0318000 LjG1.1_chr4 69554627 69559782 +
n.a. 1-phosphatidylinositol-3-phosphate 5-kinase; TAIR: AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein; Swiss-Prot: sp|Q9LUM0|FAB1B_ARATH 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B; TrEMBL-Plants: tr|A0A0B2Q844|A0A0B2Q844_GLYSO 1-phosphatidylinositol-3-phosphate 5-kinase FAB1; Found in the gene: LotjaGi4g1v0319600 LjG1.1_chr4 69713858 69732276 -
n.a. 1-phosphatidylinositol-3-phosphate 5-kinase; TAIR: AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein; Swiss-Prot: sp|Q9LUM0|FAB1B_ARATH 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B; TrEMBL-Plants: tr|A0A0B2Q844|A0A0B2Q844_GLYSO 1-phosphatidylinositol-3-phosphate 5-kinase FAB1; Found in the gene: LotjaGi4g1v0319600 LjG1.1_chr4 69720170 69732111 -
n.a. SH3 domain-containing protein; TAIR: AT3G43230.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|I1MS36|I1MS36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0319700 LjG1.1_chr4 69733907 69738263 -
n.a. SH3 domain-containing protein; TAIR: AT3G43230.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|I1MS36|I1MS36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0319700 LjG1.1_chr4 69734764 69737537 -
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 LjG1.1_chr4 70577295 70582831 +
n.a. RING/U-box protein; TAIR: AT4G10930.1 RING/U-box protein; Swiss-Prot: sp|Q8L7I1|Y4193_ARATH Uncharacterized protein At4g10930; TrEMBL-Plants: tr|K7L4K2|K7L4K2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436600 LjG1.1_chr4 80958065 80968235 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927249 7934026 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927385 7933534 +
n.a. PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|D7TCI6|D7TCI6_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927385 7933534 +
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT2G37520.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|K7LZH4|K7LZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0068600 LjG1.1_chr5 11366165 11377364 +
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; TAIR: AT2G36720.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A072VVJ3|A0A072VVJ3_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi5g1v0086500 LjG1.1_chr5 14851844 14861733 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A; TrEMBL-Plants: tr|K7LN08|K7LN08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0096000_LC LjG1.1_chr5 16995458 17003641 -
n.a. PHD-finger protein; TAIR: AT1G14770.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38461926 38467276 +
n.a. PHD-finger protein; TAIR: AT5G03780.1 TRF-like 10; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38461926 38467276 +
n.a. PHD-finger protein; TAIR: AT5G03780.1 TRF-like 10; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38461994 38467215 +
n.a. PHD-finger protein; TAIR: AT1G14770.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38462018 38467065 +