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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • IPR000836
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We have found 76 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 5.897s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi3g1v0073600.3
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|I1JMH5|I1JMH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0073600 LjG1.1_chr3 8096210 8103926 -
2 domain predictions
1 GO term
LotjaGi3g1v0073600.4
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|A0A072TKF0|A0A072TKF0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi3g1v0073600 LjG1.1_chr3 8096927 8101566 -
2 domain predictions
1 GO term
LotjaGi3g1v0073600.5
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|I1JMH5|I1JMH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0073600 LjG1.1_chr3 8096927 8102636 -
2 domain predictions
1 GO term
LotjaGi3g1v0073600.6
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|A0A072TKF0|A0A072TKF0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi3g1v0073600 LjG1.1_chr3 8096998 8101525 -
2 domain predictions
1 GO term
LotjaGi3g1v0073600.7
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|A0A072TKF0|A0A072TKF0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi3g1v0073600 LjG1.1_chr3 8096998 8101566 -
2 domain predictions
1 GO term
LotjaGi3g1v0111900.1
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13804766 13809702 +
3 domain predictions
1 GO term
LotjaGi3g1v0111900.2
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13806182 13808728 +
3 domain predictions
1 GO term
LotjaGi3g1v0230500.1
n.a. Uracil phosphoribosyltransferase; TAIR: AT3G53900.2 uracil phosphoribosyltransferase; Swiss-Prot: sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase; TrEMBL-Plants: tr|I3S7F3|I3S7F3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0230500 LjG1.1_chr3 36085990 36092725 -
2 domain predictions
1 GO term
LotjaGi3g1v0230500.2
n.a. Uracil phosphoribosyltransferase; TAIR: AT3G53900.2 uracil phosphoribosyltransferase; Swiss-Prot: sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase; TrEMBL-Plants: tr|I3S7F3|I3S7F3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0230500 LjG1.1_chr3 36086264 36092728 -
2 domain predictions
1 GO term
LotjaGi3g1v0320200.1
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67969747 67988419 +
3 domain predictions
1 GO term
LotjaGi3g1v0320200.2
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67969782 67988419 +
3 domain predictions
1 GO term
LotjaGi3g1v0320200.3
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67983670 67988064 +
3 domain predictions
1 GO term
LotjaGi3g1v0515700.1
n.a. Amidophosphoribosyltransferase; TAIR: AT2G16570.1 GLN phosphoribosyl pyrophosphate amidotransferase 1; Swiss-Prot: sp|Q9SI61|ASE1_ARATH Amidophosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|G7JL07|G7JL07_MEDTR GLN phosphoribosyl pyrophosphate amidotransferase; Found in the gene: LotjaGi3g1v0515700 LjG1.1_chr3 93271943 93274391 -
3 domain predictions
1 GO term
LotjaGi4g1v0189800.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G35390.2 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q42581|KPRS1_ARATH Ribose-phosphate pyrophosphokinase 1, chloroplastic; TrEMBL-Plants: tr|I3S2I7|I3S2I7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0189800 LjG1.1_chr4 43488623 43492313 +
2 domain predictions
1 GO term
LotjaGi4g1v0189800.2
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT1G32380.1 phosphoribosyl pyrophosphate (PRPP) synthase 2; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|I3T7C1|I3T7C1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0189800 LjG1.1_chr4 43489505 43492115 +
2 domain predictions
1 GO term
LotjaGi4g1v0222600.1
n.a. Uridine kinase; TAIR: AT5G40870.1 uridine kinase/uracil phosphoribosyltransferase 1; Swiss-Prot: sp|Q9FKS0|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic; TrEMBL-Plants: tr|I1MUP0|I1MUP0_SOYBN Uridine kinase; Found in the gene: LotjaGi4g1v0222600 LjG1.1_chr4 52763851 52768972 -
2 domain predictions
1 GO term
LotjaGi4g1v0366900.1
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W3N9|A0A023W3N9_LOTJA Histidine kinase 3 variant 1; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74675995 74684564 +
2 domain predictions
1 GO term
LotjaGi4g1v0366900.2
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676046 74684422 +
2 domain predictions
1 GO term
LotjaGi4g1v0366900.3
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676694 74683363 +
2 domain predictions
1 GO term
LotjaGi6g1v0139200.1
n.a. Uridine kinase; TAIR: AT1G55810.1 uridine kinase-like 3; Swiss-Prot: sp|Q8VYB2|UKL3_ARATH Uridine kinase-like protein 3; TrEMBL-Plants: tr|V7BNR6|V7BNR6_PHAVU Uridine kinase; Found in the gene: LotjaGi6g1v0139200 LjG1.1_chr6 40438329 40445837 -
2 domain predictions
1 GO term
LotjaGi6g1v0139200.2
n.a. Uridine kinase; TAIR: AT1G55810.1 uridine kinase-like 3; Swiss-Prot: sp|Q8VYB2|UKL3_ARATH Uridine kinase-like protein 3; TrEMBL-Plants: tr|V7BNR6|V7BNR6_PHAVU Uridine kinase; Found in the gene: LotjaGi6g1v0139200 LjG1.1_chr6 40438526 40445677 -
2 domain predictions
1 GO term
LotjaGi6g1v0139200.3
n.a. Uridine kinase; TAIR: AT4G26510.1 uridine kinase-like 4; Swiss-Prot: sp|O65583|UKL4_ARATH Uridine kinase-like protein 4; TrEMBL-Plants: tr|I1KYV2|I1KYV2_SOYBN Uridine kinase; Found in the gene: LotjaGi6g1v0139200 LjG1.1_chr6 40438553 40445732 -
2 domain predictions
1 GO term
LotjaGi6g1v0139200.4
n.a. Uridine kinase; TAIR: AT4G26510.1 uridine kinase-like 4; Swiss-Prot: sp|O65583|UKL4_ARATH Uridine kinase-like protein 4; TrEMBL-Plants: tr|V7BNR6|V7BNR6_PHAVU Uridine kinase; Found in the gene: LotjaGi6g1v0139200 LjG1.1_chr6 40439191 40444036 -
2 domain predictions
1 GO term
LotjaGi6g1v0139200.5
n.a. Uridine kinase; TAIR: AT4G26510.1 uridine kinase-like 4; Swiss-Prot: sp|O65583|UKL4_ARATH Uridine kinase-like protein 4; TrEMBL-Plants: tr|I1KYV2|I1KYV2_SOYBN Uridine kinase; Found in the gene: LotjaGi6g1v0139200 LjG1.1_chr6 40439191 40444538 -
2 domain predictions
1 GO term
LotjaGi6g1v0169000.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G42910.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q680A5|KPRS4_ARATH Ribose-phosphate pyrophosphokinase 4; TrEMBL-Plants: tr|G7K0V0|G7K0V0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi6g1v0169000 LjG1.1_chr6 45435693 45439777 +
3 domain predictions
1 GO term
LotjaGi6g1v0191400.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G42910.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q680A5|KPRS4_ARATH Ribose-phosphate pyrophosphokinase 4; TrEMBL-Plants: tr|G7K0V0|G7K0V0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi6g1v0191400 LjG1.1_chr6 48783971 48787195 +
3 domain predictions
1 GO term