Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001680
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 837 results. Now displaying 5 of 17 with 50 rows per page. This search has taken 6.579s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2722600.3
n.a. Neurobeachin-like protein [Medicago truncatula] gi|358344469|ref|XP_003636312.1| chr3 33473840 33485958 +
4 domain predictions
1 GO term
Lj3g3v2812190.1
n.a. PREDICTED: DDB1- and CUL4-associated factor 13-like [Glycine max] gi|356501101|ref|XP_003519367.1| chr3 34686328 34692958 -
4 domain predictions
1 GO term
Lj3g3v3026750.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Glycine max] gi|356544684|ref|XP_003540777.1| chr3 37769667 37780221 -
2 domain predictions
1 GO term
Lj3g3v3337440.1
n.a. PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] gi|225428610|ref|XP_002281238.1| chr3 40717809 40723485 -
4 domain predictions
1 GO term
Lj3g3v3337450.1
n.a. PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] gi|225428610|ref|XP_002281238.1| chr3 40718177 40723485 -
4 domain predictions
1 GO term
Lj3g3v3338300.1
n.a. PREDICTED: phospholipase A-2-activating protein-like [Cicer arietinum] gi|502149136|ref|XP_004507405.1| chr3 40894361 40905802 -
4 domain predictions
1 GO term
Lj3g3v3338610.1
n.a. PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Glycine max] gi|356538779|ref|XP_003537878.1| chr3 41065266 41068079 -
4 domain predictions
1 GO term
Lj3g3v3376170.1
n.a. coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1| chr3 41586490 41590168 -
2 domain predictions
1 GO term
Lj3g3v3376180.1
n.a. coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1| chr3 41588152 41597640 -
4 domain predictions
1 GO term
Lj3g3v3440320.1
n.a. PREDICTED: WD-40 repeat-containing protein MSI3-like [Glycine max] gi|356538449|ref|XP_003537716.1| chr3 42170938 42173227 +
4 domain predictions
1 GO term
Lj3g3v3640300.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr3 44463301 44465078 +
4 domain predictions
1 GO term
Lj4g3v0083880.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357448221|ref|XP_003594386.1| chr4 673918 674656 -
4 domain predictions
1 GO term
Lj4g3v0244120.1
n.a. WD-40 repeat protein [Pisum sativum] gi|69207914|gb|AAZ03745.1| chr4 2971371 2975664 +
4 domain predictions
1 GO term
Lj4g3v0244130.1
n.a. WD-40 repeat protein [Pisum sativum] gi|69207914|gb|AAZ03745.1| chr4 2971371 2976847 +
3 domain predictions
1 GO term
Lj4g3v0338180.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Glycine max] gi|356558620|ref|XP_003547602.1| chr4 4284844 4290300 -
4 domain predictions
1 GO term
Lj4g3v0445700.1
n.a. PREDICTED: telomerase Cajal body protein 1-like [Cicer arietinum] gi|502142475|ref|XP_004504976.1| chr4 5971676 5978101 -
4 domain predictions
1 GO term
Lj4g3v1287260.1
n.a. PREDICTED: protein FIZZY-RELATED 2-like [Glycine max] gi|356565305|ref|XP_003550882.1| chr4 18949765 18956385 -
4 domain predictions
1 GO term
Lj4g3v1327590.1
n.a. cell cycle switch protein CCS52A [Lotus japonicus] gi|66932877|gb|AAY58271.1| chr4 19559207 19565171 +
4 domain predictions
1 GO term
Lj4g3v1327590.2
n.a. cell cycle switch protein CCS52A [Lotus japonicus] gi|66932877|gb|AAY58271.1| chr4 19559207 19570550 +
4 domain predictions
1 GO term
Lj4g3v1399990.1
n.a. PREDICTED: protein tipD-like [Glycine max] gi|356513836|ref|XP_003525614.1| chr4 22068248 22071076 -
4 domain predictions
1 GO term
Lj4g3v1410010.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356565258|ref|XP_003550859.1| chr4 22089020 22091240 +
4 domain predictions
1 GO term
Lj4g3v1477240.1
n.a. PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1| chr4 22623840 22632951 -
4 domain predictions
1 GO term
Lj4g3v1560510.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357477279|ref|XP_003608925.1| chr4 23189631 23192082 +
4 domain predictions
1 GO term
Lj4g3v1560520.1
n.a. n.a. chr4 23190503 23192972 -
4 domain predictions
1 GO term
Lj4g3v1801290.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356565224|ref|XP_003550842.1| chr4 25460658 25467694 -
4 domain predictions
1 GO term
Lj4g3v1813490.1
n.a. PREDICTED: serine-threonine kinase receptor-associated protein-like [Glycine max] gi|356563065|ref|XP_003549786.1| chr4 25541047 25545642 -
4 domain predictions
1 GO term
Lj4g3v1881470.1
n.a. PREDICTED: topless-related protein 4-like isoform X1 [Cicer arietinum] gi|502151499|ref|XP_004508471.1| chr4 26477491 26487600 -
4 domain predictions
1 GO term
Lj4g3v1881470.2
n.a. PREDICTED: topless-related protein 4-like isoform X1 [Cicer arietinum] gi|502151499|ref|XP_004508471.1| chr4 26477491 26487600 -
4 domain predictions
1 GO term
Lj4g3v1983650.1
n.a. transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30693183|ref|NP_190509.2| chr4 27673314 27681658 -
4 domain predictions
1 GO term
Lj4g3v1983650.3
n.a. transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30693183|ref|NP_190509.2| chr4 27673314 27681658 -
4 domain predictions
1 GO term
Lj4g3v2018270.1
n.a. Autophagy-related protein [Medicago truncatula] gi|357479937|ref|XP_003610254.1| chr4 27967954 27973173 +
2 domain predictions
1 GO term
Lj4g3v2018270.2
n.a. PREDICTED: autophagy-related protein 18-like [Glycine max] gi|356562531|ref|XP_003549523.1| chr4 27967954 27973173 +
2 domain predictions
1 GO term
Lj4g3v2120410.1
n.a. PREDICTED: WD repeat-containing protein 75-like [Cicer arietinum] gi|502150260|ref|XP_004507867.1| chr4 28997524 29006742 -
4 domain predictions
1 GO term
Lj4g3v2139570.1
n.a. PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1| chr4 29457742 29460534 -
3 domain predictions
1 GO term
Lj4g3v2172780.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like [Cicer arietinum] gi|502151023|ref|XP_004508240.1| chr4 29936379 29941269 -
4 domain predictions
1 GO term
Lj4g3v2289100.1
n.a. PREDICTED: WD repeat-containing protein 43-like [Cicer arietinum] gi|502150903|ref|XP_004508181.1| chr4 31812817 31820482 -
4 domain predictions
1 GO term
Lj4g3v2289120.1
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr4 31831793 31841555 -
4 domain predictions
1 GO term
Lj4g3v2295530.1
n.a. p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|357450557|ref|XP_003595555.1| chr4 31975006 31980071 +
4 domain predictions
1 GO term
Lj4g3v2352060.1
n.a. PREDICTED: WD repeat-containing protein 5-like [Glycine max] gi|356521875|ref|XP_003529576.1| chr4 32467594 32469488 -
4 domain predictions
1 GO term
Lj4g3v2539190.1
n.a. PREDICTED: SEC12-like protein 2-like isoform X2 [Cicer arietinum] gi|502143257|ref|XP_004505275.1| chr4 34164243 34167499 +
3 domain predictions
1 GO term
Lj4g3v2561510.1
n.a. PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Cicer arietinum] gi|502141015|ref|XP_004504409.1| chr4 34300309 34305412 -
4 domain predictions
1 GO term
Lj4g3v2605950.1
n.a. Cellulose synthase [Medicago truncatula] gi|357519009|ref|XP_003629793.1| chr4 35442371 35448376 -
4 domain predictions
1 GO term
Lj4g3v2717130.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356528432|ref|XP_003532807.1| chr4 36600065 36602899 +
4 domain predictions
1 GO term
Lj4g3v2742950.1
n.a. PREDICTED: chromatin assembly factor 1 subunit B-like [Glycine max] gi|356512829|ref|XP_003525118.1| chr4 36885126 36889375 +
4 domain predictions
1 GO term
Lj4g3v2775540.1
n.a. PREDICTED: WD repeat domain-containing protein 83-like [Cicer arietinum] gi|502139939|ref|XP_004503980.1| chr4 37151174 37154517 +
4 domain predictions
1 GO term
Lj4g3v2871900.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max] gi|356516478|ref|XP_003526921.1| chr4 38414180 38419189 -
3 domain predictions
1 GO term
Lj4g3v2991190.1
n.a. transducin family protein [Arabidopsis lyrata subsp]. lyrata] gi|297809371|ref|XP_002872569.1| chr4 39541977 39547126 -
4 domain predictions
1 GO term
Lj4g3v3014540.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Glycine max] gi|356527704|ref|XP_003532448.1| chr4 40143191 40147405 -
4 domain predictions
1 GO term
Lj4g3v3014540.2
n.a. PREDICTED: WD repeat-containing protein 44-like [Glycine max] gi|356527704|ref|XP_003532448.1| chr4 40145257 40147230 -
4 domain predictions
1 GO term
Lj4g3v3061490.3
n.a. U-box domain-containing protein [Medicago truncatula] gi|357520957|ref|XP_003630767.1| chr4 40818554 40821104 +
4 domain predictions
1 GO term