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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002110
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 302 results. Now displaying 2 of 7 with 50 rows per page. This search has taken 6.476s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v5062770.2
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X3 [Cicer arietinum] gi|502114219|ref|XP_004494898.1| chr1 62269429 62273315 +
3 domain predictions
1 GO term
Lj2g3v0782660.1
n.a. PREDICTED: protein CbxX, chromosomal-like [Glycine max] gi|356520543|ref|XP_003528921.1| chr2 12520130 12524279 -
4 domain predictions
1 GO term
Lj2g3v1267150.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cicer arietinum] gi|502094108|ref|XP_004490141.1| chr2 20137901 20140988 +
5 domain predictions
1 GO term
Lj2g3v1549660.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357484621|ref|XP_003612598.1| chr2 24367334 24368454 -
4 domain predictions
1 GO term
Lj2g3v1549660.2
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357484621|ref|XP_003612598.1| chr2 24367334 24367810 -
3 domain predictions
1 GO term
Lj2g3v1549990.1
n.a. PREDICTED: ankyrin-3-like [Cicer arietinum] gi|502162024|ref|XP_004512364.1| chr2 24480513 24483513 -
4 domain predictions
1 GO term
Lj2g3v1647860.1
n.a. PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Cicer arietinum] gi|502161503|ref|XP_004512186.1| chr2 25721641 25725388 -
3 domain predictions
1 GO term
Lj2g3v2002310.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X3 [Cicer arietinum] gi|502114219|ref|XP_004494898.1| chr2 30273220 30281055 -
3 domain predictions
1 GO term
Lj2g3v2276480.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform 1 [Glycine max] gi|356500868|ref|XP_003519252.1| chr2 33262293 33265734 +
3 domain predictions
1 GO term
Lj2g3v2276480.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform 1 [Glycine max] gi|356500868|ref|XP_003519252.1| chr2 33262293 33268081 +
3 domain predictions
1 GO term
Lj2g3v2541790.1
n.a. PREDICTED: potassium channel SKOR-like [Glycine max] gi|356552003|ref|XP_003544361.1| chr2 35151176 35162227 -
3 domain predictions
1 GO term
Lj2g3v2748860.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform 1 [Glycine max] gi|356552713|ref|XP_003544707.1| chr2 36477111 36480114 +
3 domain predictions
1 GO term
Lj2g3v2794550.1
n.a. PREDICTED: ankyrin-2-like [Cicer arietinum] gi|502097529|ref|XP_004491016.1| chr2 36796984 36798899 +
4 domain predictions
1 GO term
Lj2g3v3007470.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr2 38841979 38846530 -
2 domain predictions
1 GO term
Lj2g3v3073980.1
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39563157 39571182 +
3 domain predictions
1 GO term
Lj2g3v3073980.2
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39565751 39571182 +
3 domain predictions
1 GO term
Lj2g3v3109860.1
n.a. PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cicer arietinum] gi|502098928|ref|XP_004491350.1| chr2 40197761 40203192 -
3 domain predictions
1 GO term
Lj2g3v3109860.2
n.a. PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cicer arietinum] gi|502098928|ref|XP_004491350.1| chr2 40198464 40203192 -
3 domain predictions
1 GO term
Lj3g3v0273600.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357454831|ref|XP_003597696.1| chr3 1629143 1631973 +
3 domain predictions
1 GO term
Lj3g3v0429350.1
n.a. PREDICTED: death-associated protein kinase 1-like [Glycine max] gi|356545491|ref|XP_003541175.1| chr3 4301716 4303808 +
3 domain predictions
1 GO term
Lj3g3v0429350.2
n.a. Ankyrin repeat protein [Medicago truncatula] gi|357517641|ref|XP_003629109.1| chr3 4301716 4305217 +
3 domain predictions
1 GO term
Lj3g3v0489500.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 30-like [Glycine max] gi|356544173|ref|XP_003540529.1| chr3 5791560 5794647 -
4 domain predictions
1 GO term
Lj3g3v0838340.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum] gi|502127941|ref|XP_004499884.1| chr3 10563585 10565697 -
4 domain predictions
1 GO term
Lj3g3v1581460.1
n.a. XB3 in [Theobroma cacao] gi|508786803|gb|EOY34059.1| chr3 20074451 20078030 -
4 domain predictions
1 GO term
Lj3g3v3132920.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356541266|ref|XP_003539100.1| chr3 39057746 39062369 -
3 domain predictions
1 GO term
Lj3g3v3189740.1
n.a. XB3 in [Theobroma cacao] gi|508786803|gb|EOY34059.1| chr3 39459846 39463090 +
4 domain predictions
1 GO term
Lj3g3v3500220.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD2-like [Glycine max] gi|356544659|ref|XP_003540765.1| chr3 42585629 42595505 -
3 domain predictions
1 GO term
Lj3g3v3553970.1
n.a. PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Cicer arietinum] gi|502144378|ref|XP_004505675.1| chr3 43292998 43294401 -
3 domain predictions
1 GO term
Lj3g3v3553980.1
n.a. PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Glycine max] gi|356538524|ref|XP_003537753.1| chr3 43293136 43317191 -
2 domain predictions
1 GO term
Lj4g3v0151500.1
n.a. PREDICTED: ankyrin repeat domain-containing protein 13B-like [Glycine max] gi|356564488|ref|XP_003550486.1| chr4 1636362 1639364 +
2 domain predictions
1 GO term
Lj4g3v0300480.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr4 3635734 3642228 +
4 domain predictions
1 GO term
Lj4g3v0300480.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr4 3642835 3646326 +
3 domain predictions
1 GO term
Lj4g3v0341140.1
n.a. PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 [Cicer arietinum] gi|502142119|ref|XP_004504800.1| chr4 4569894 4578633 +
3 domain predictions
1 GO term
Lj4g3v0409560.1
n.a. PREDICTED: probable S-acyltransferase At2g14255-like [Cicer arietinum] gi|502142283|ref|XP_004504881.1| chr4 5281958 5291292 +
3 domain predictions
1 GO term
Lj4g3v0684110.1
n.a. PREDICTED: dual specificity protein kinase pyk1-like [Glycine max] gi|356521649|ref|XP_003529466.1| chr4 11343233 11350625 +
3 domain predictions
1 GO term
Lj4g3v1823550.1
n.a. PREDICTED: potassium channel AKT1-like isoform X1 [Cicer arietinum] gi|502151637|ref|XP_004508539.1| chr4 25568120 25574059 -
3 domain predictions
1 GO term
Lj4g3v1823550.3
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356563061|ref|XP_003549784.1| chr4 25568120 25572913 -
3 domain predictions
1 GO term
Lj4g3v1947710.1
n.a. PREDICTED: S-acyltransferase TIP1-like [Cicer arietinum] gi|502151388|ref|XP_004508416.1| chr4 27257461 27263643 +
3 domain predictions
1 GO term
Lj4g3v2023790.1
n.a. PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XBAT32-like [Cicer arietinum] gi|502150110|ref|XP_004507793.1| chr4 28189677 28195088 -
4 domain predictions
1 GO term
Lj4g3v2215570.1
n.a. PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform X1 [Cicer arietinum] gi|502150650|ref|XP_004508057.1| chr4 30793368 30798230 -
3 domain predictions
1 GO term
Lj4g3v2374870.1
n.a. Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|357447499|ref|XP_003594025.1| chr4 32759307 32764147 -
3 domain predictions
1 GO term
Lj4g3v2526000.1
n.a. PREDICTED: ankyrin-1-like [Glycine max] gi|356538107|ref|XP_003537546.1| chr4 34053655 34058546 +
3 domain predictions
1 GO term
Lj4g3v2573580.1
n.a. PREDICTED: calmodulin-binding transcription activator 4-like [Glycine max] gi|356510899|ref|XP_003524171.1| chr4 34335669 34343806 -
3 domain predictions
1 GO term
Lj4g3v2689670.2
n.a. ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674.1|AF458699_1 chr4 36175640 36179966 -
3 domain predictions
1 GO term
Lj4g3v3113080.1
n.a. PREDICTED: ankyrin repeat-containing protein At2g01680-like [Cicer arietinum] gi|502138302|ref|XP_004503355.1| chr4 41549859 41553879 +
3 domain predictions
1 GO term
Lj5g3v0670580.1
n.a. PREDICTED: ankyrin-1-like [Cicer arietinum] gi|502176737|ref|XP_004515928.1| chr5 9717738 9721748 +
3 domain predictions
1 GO term
Lj5g3v1168520.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr5 18543824 18544291 +
3 domain predictions
1 GO term
Lj5g3v1170930.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|359473665|ref|XP_003631341.1| chr5 18616748 18629118 +
2 domain predictions
1 GO term
Lj5g3v1201220.1
n.a. PREDICTED: probable methyltransferase PMT8-like [Glycine max] gi|356576523|ref|XP_003556380.1| chr5 19221750 19227096 -
3 domain predictions
1 GO term
Lj5g3v1681470.1
n.a. PREDICTED: ankyrin-2-like [Cicer arietinum] gi|502118004|ref|XP_004496053.1| chr5 23906559 23909353 -
4 domain predictions
1 GO term