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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009057
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We have found 1036 results. Now displaying 21 of 21 with 50 rows per page. This search has taken 5.634s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0225900.1
n.a. Myb transcription factor; TAIR: AT5G35550.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FJA2|TT2_ARATH Transcription factor TT2; TrEMBL-Plants: tr|B1B3F3|B1B3F3_LOTJA R2R3-MYB transcription factor LjTT2b; Found in the gene: LotjaGi6g1v0225900 LjG1.1_chr6 53192526 53194081 +
2 domain predictions
1 GO term
LotjaGi6g1v0226000.1
n.a. Myb transcription factor; TAIR: AT5G35550.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|P10290|MYBC_MAIZE Anthocyanin regulatory C1 protein; TrEMBL-Plants: tr|B1B3F2|B1B3F2_LOTJA R2R3-MYB transcription factor LjTT2a; Found in the gene: LotjaGi6g1v0226000 LjG1.1_chr6 53212199 53214231 -
2 domain predictions
1 GO term
LotjaGi6g1v0226300.1
n.a. Myb transcription factor; TAIR: AT5G35550.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FJA2|TT2_ARATH Transcription factor TT2; TrEMBL-Plants: tr|B1B3F4|B1B3F4_LOTJA R2R3-MYB transcription factor LjTT2c; Found in the gene: LotjaGi6g1v0226300 LjG1.1_chr6 53235125 53236927 -
2 domain predictions
1 GO term
LotjaGi6g1v0235500.1
n.a. Pathogenesis-related homeodomain protein; TAIR: AT4G29940.1 pathogenesis related homeodomain protein A; Swiss-Prot: sp|P48785|PRH_ARATH Pathogenesis-related homeodomain protein; TrEMBL-Plants: tr|K7MBU2|K7MBU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0235500 LjG1.1_chr6 54532357 54544956 -
2 domain predictions
1 GO term
LotjaGi6g1v0252700_LC.1
n.a. SWI/SNF complex subunit SWI3A; TAIR: AT2G47620.1 SWITCH/sucrose nonfermenting 3A; Swiss-Prot: sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A; TrEMBL-Plants: tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi6g1v0252700_LC LjG1.1_chr6 56509639 56511200 +
2 domain predictions
1 GO term
LotjaGi6g1v0255200.1
n.a. Two-component response regulator; TAIR: AT4G16110.1 response regulator 2; Swiss-Prot: sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2; TrEMBL-Plants: tr|I1MGI9|I1MGI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0255200 LjG1.1_chr6 56796785 56802796 +
2 domain predictions
1 GO term
LotjaGi6g1v0255200.2
n.a. Two-component response regulator; TAIR: AT4G16110.1 response regulator 2; Swiss-Prot: sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2; TrEMBL-Plants: tr|I1MGI9|I1MGI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0255200 LjG1.1_chr6 56796854 56802794 +
2 domain predictions
1 GO term
LotjaGi6g1v0262200.1
n.a. Myb transcription factor; TAIR: AT5G49620.1 myb domain protein 78; Swiss-Prot: sp|Q9FGY3|MYB78_ARATH Transcription factor MYB78; TrEMBL-Plants: tr|A0A151QND2|A0A151QND2_CAJCA Myb-related protein 305 family; Found in the gene: LotjaGi6g1v0262200 LjG1.1_chr6 57490344 57492808 -
2 domain predictions
1 GO term
LotjaGi6g1v0265800.1
n.a. Telomere repeat binding factor 1; TAIR: AT1G49950.1 telomere repeat binding factor 1; Swiss-Prot: sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1; TrEMBL-Plants: tr|A0A1J7HM45|A0A1J7HM45_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0265800 LjG1.1_chr6 57964594 57974026 -
2 domain predictions
1 GO term
LotjaGi6g1v0271800.1
n.a. Homeobox leucine-zipper protein; TAIR: AT2G34710.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|O04291|ATB14_ARATH Homeobox-leucine zipper protein ATHB-14; TrEMBL-Plants: tr|I1L0E4|I1L0E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0271800 LjG1.1_chr6 58640145 58646081 +
2 domain predictions
1 GO term
LotjaGi6g1v0271800.2
n.a. Homeobox leucine-zipper protein; TAIR: AT2G34710.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|O04291|ATB14_ARATH Homeobox-leucine zipper protein ATHB-14; TrEMBL-Plants: tr|K7LBF5|K7LBF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0271800 LjG1.1_chr6 58640733 58645807 +
2 domain predictions
1 GO term
LotjaGi6g1v0279400.1
n.a. Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400 LjG1.1_chr6 59614627 59620411 -
2 domain predictions
1 GO term
LotjaGi6g1v0279400.2
n.a. Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400 LjG1.1_chr6 59615046 59617695 -
2 domain predictions
1 GO term
LotjaGi6g1v0279500.1
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624271 59630378 -
2 domain predictions
1 GO term
LotjaGi6g1v0279500.2
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624271 59630378 -
2 domain predictions
1 GO term
LotjaGi6g1v0279500.3
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624374 59630242 -
2 domain predictions
1 GO term
LotjaGi6g1v0279500.4
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624652 59626297 -
2 domain predictions
1 GO term
LotjaGi6g1v0284200.1
n.a. Transcriptional adapter ADA2; TAIR: AT4G16420.3 ADA2 2B; Swiss-Prot: sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2; TrEMBL-Plants: tr|I1MFQ5|I1MFQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284200 LjG1.1_chr6 60055316 60060639 -
2 domain predictions
1 GO term
LotjaGi6g1v0284200.2
n.a. Transcriptional adapter ADA2; TAIR: AT4G16420.3 ADA2 2B; Swiss-Prot: sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2; TrEMBL-Plants: tr|I1MFQ5|I1MFQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284200 LjG1.1_chr6 60055333 60060579 -
2 domain predictions
1 GO term
LotjaGi6g1v0289900.1
n.a. homeobox-1; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3S3Z4|A0A0S3S3Z4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0289900 LjG1.1_chr6 60711844 60717585 +
2 domain predictions
1 GO term
LotjaGi6g1v0289900.2
n.a. Homeobox transcription factor KN4; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A151T6Q4|A0A151T6Q4_CAJCA Homeobox protein SBH1; Found in the gene: LotjaGi6g1v0289900 LjG1.1_chr6 60712744 60717283 +
2 domain predictions
1 GO term
LotjaGi6g1v0293500.1
n.a. Myb family transcription factor family protein; TAIR: AT4G04605.1 Myb-like DNA-binding domain protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|K7LB46|K7LB46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0293500 LjG1.1_chr6 61127699 61130970 -
2 domain predictions
1 GO term
LotjaGi6g1v0306600.1
n.a. DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|I1M1D0|I1M1D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306600 LjG1.1_chr6 62377881 62385701 +
2 domain predictions
1 GO term
LotjaGi6g1v0306600.2
n.a. DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|A0A0B2RF13|A0A0B2RF13_GLYSO Putative chromatin-remodeling complex ATPase chain; Found in the gene: LotjaGi6g1v0306600 LjG1.1_chr6 62378108 62384998 +
2 domain predictions
1 GO term
LotjaGi6g1v0326500.1
n.a. Wuschel homeobox protein; TAIR: AT5G45980.1 WUSCHEL related homeobox 8; Swiss-Prot: sp|A3B6V0|WOX12_ORYSJ WUSCHEL-related homeobox 12; TrEMBL-Plants: tr|A0A0L9VFE3|A0A0L9VFE3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0326500 LjG1.1_chr6 64171394 64174578 +
2 domain predictions
1 GO term
LotjaGi6g1v0328200.1
n.a. Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0L9VFB6|A0A0L9VFB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0328200 LjG1.1_chr6 64324517 64341249 +
2 domain predictions
1 GO term
LotjaGi6g1v0328200.2
n.a. Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0L9VFB6|A0A0L9VFB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0328200 LjG1.1_chr6 64325210 64336775 +
2 domain predictions
1 GO term
LotjaGi6g1v0339900.1
n.a. Myb transcription factor; TAIR: AT4G21440.1 MYB-like 102; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|I3SEP2|I3SEP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0339900 LjG1.1_chr6 65376240 65378113 +
2 domain predictions
1 GO term
LotjaGi6g1v0362500.1
n.a. Chaperone protein DnaJ; TAIR: AT3G11450.1 DnaJ and Myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2; TrEMBL-Plants: tr|V7BRD4|V7BRD4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0362500 LjG1.1_chr6 67432695 67436890 -
2 domain predictions
1 GO term
LotjaGi6g1v0362500.2
n.a. Chaperone protein DnaJ; TAIR: AT3G11450.1 DnaJ and Myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2; TrEMBL-Plants: tr|V7BRD4|V7BRD4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0362500 LjG1.1_chr6 67433014 67435462 -
2 domain predictions
1 GO term
LotjaGi6g1v0362500.3
n.a. Chaperone protein DnaJ; TAIR: AT3G11450.1 DnaJ and Myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2; TrEMBL-Plants: tr|A0A0L9VGQ7|A0A0L9VGQ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362500 LjG1.1_chr6 67433325 67435286 -
2 domain predictions
1 GO term
LotjaGi6g1v0365100.1
n.a. Telomeric repeat-binding factor 1; TAIR: AT1G15720.1 TRF-like 5; Swiss-Prot: sp|Q6WLH3|SMH5_MAIZE Single myb histone 5; TrEMBL-Plants: tr|A0A1J7H3F4|A0A1J7H3F4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0365100 LjG1.1_chr6 67731846 67737426 +
2 domain predictions
1 GO term
LotjaGi6g1v0365100.2
n.a. Telomeric repeat-binding factor 1; TAIR: AT1G15720.1 TRF-like 5; Swiss-Prot: sp|Q6WLH3|SMH5_MAIZE Single myb histone 5; TrEMBL-Plants: tr|A0A1J7H3F4|A0A1J7H3F4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0365100 LjG1.1_chr6 67732835 67737426 +
2 domain predictions
1 GO term
LotjaGi6g1v0365200_LC.1
n.a. Kinesin-like protein; TAIR: AT1G20060.7 ATP binding microtubule motor family protein; Swiss-Prot: sp|Q6YU88|KN6_ORYSJ Kinesin-like protein KIN-6; TrEMBL-Plants: tr|K7KSM0|K7KSM0_SOYBN Kinesin-like protein; Found in the gene: LotjaGi6g1v0365200_LC LjG1.1_chr6 67741555 67749069 +
2 domain predictions
1 GO term
LotjaGi6g1v0365200_LC.2
n.a. Kinesin-like protein; TAIR: AT1G20060.7 ATP binding microtubule motor family protein; Swiss-Prot: sp|Q6YU88|KN6_ORYSJ Kinesin-like protein KIN-6; TrEMBL-Plants: tr|K7KSM2|K7KSM2_SOYBN Kinesin-like protein; Found in the gene: LotjaGi6g1v0365200_LC LjG1.1_chr6 67741555 67749069 +
2 domain predictions
1 GO term
LotjaGi6g1v0365200_LC.3
n.a. Telomere repeat-binding factor like-protein; TAIR: AT1G72650.1 TRF-like 6; Swiss-Prot: sp|Q6WLH3|SMH5_MAIZE Single myb histone 5; TrEMBL-Plants: tr|A0A151RNF3|A0A151RNF3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0365200_LC LjG1.1_chr6 67745886 67748039 +
2 domain predictions
1 GO term