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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 3 of 18 with 50 rows per page. This search has taken 7.663s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0052210.1
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
2 domain predictions
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Lj1g3v0052210.2
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
2 domain predictions
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Lj1g3v0052210.3
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 365938 407245 -
2 domain predictions
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Lj1g3v0053660.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628227 -
2 domain predictions
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Lj1g3v0053660.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628268 -
2 domain predictions
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Lj1g3v0180970.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| chr1 2075745 2092386 +
2 domain predictions
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Lj1g3v0415480.1
n.a. PREDICTED: U-box domain-containing protein 38-like [Cicer arietinum] gi|502133980|ref|XP_004501958.1| chr1 5320888 5323441 -
2 domain predictions
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Lj1g3v0449060.1
n.a. n.a. chr1 6015729 6018980 -
2 domain predictions
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Lj1g3v0579450.1
n.a. PREDICTED: calcium-binding protein 39-like [Cicer arietinum] gi|502078924|ref|XP_004486097.1| chr1 7095133 7097300 -
2 domain predictions
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Lj1g3v0982010.1
n.a. PREDICTED: U-box domain-containing protein 8-like [Vitis vinifera] gi|359496637|ref|XP_003635287.1| chr1 12353515 12353877 +
2 domain predictions
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Lj1g3v0998740.1
n.a. PREDICTED: importin subunit beta-1-like [Cicer arietinum] gi|502136423|ref|XP_004502681.1| chr1 12668543 12673082 +
2 domain predictions
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Lj1g3v1008930.1
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356518651|ref|XP_003527992.1| chr1 12869719 12875003 -
2 domain predictions
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Lj1g3v1290370.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357519821|ref|XP_003630199.1| chr1 15383382 15384887 -
2 domain predictions
 –
Lj1g3v1318260.1
n.a. PREDICTED: U-box domain-containing protein 25-like [Glycine max] gi|356516368|ref|XP_003526867.1| chr1 15983957 15985156 -
2 domain predictions
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Lj1g3v1329370.1
n.a. PREDICTED: U-box domain-containing protein 25-like [Glycine max] gi|356516368|ref|XP_003526867.1| chr1 16035162 16037671 -
2 domain predictions
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Lj1g3v1548700.1
n.a. PREDICTED: BEACH domain-containing protein lvsC-like [Cicer arietinum] gi|502133135|ref|XP_004501660.1| chr1 18464371 18497830 -
2 domain predictions
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Lj1g3v1548700.2
n.a. PREDICTED: BEACH domain-containing protein lvsC-like [Cicer arietinum] gi|502133135|ref|XP_004501660.1| chr1 18464371 18497696 -
2 domain predictions
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Lj1g3v1708950.1
n.a. PREDICTED: pumilio homolog 12-like [Cicer arietinum] gi|502132806|ref|XP_004501537.1| chr1 20157837 20160820 +
2 domain predictions
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Lj1g3v1719010.1
n.a. Tetratricopeptide repeat protein [Medicago truncatula] gi|358345504|ref|XP_003636817.1| chr1 20176054 20179008 +
2 domain predictions
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Lj1g3v1731270.1
n.a. PREDICTED: interferon-related developmental regulator 1-like [Glycine max] gi|356514485|ref|XP_003525936.1| chr1 20313681 20317703 +
2 domain predictions
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Lj1g3v1754610.1
n.a. PREDICTED: U-box domain-containing protein 30-like [Glycine max] gi|356554018|ref|XP_003545347.1| chr1 20475106 20477160 +
2 domain predictions
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Lj1g3v1819810.1
n.a. PREDICTED: micronuclear linker histone polyprotein-like [Cicer arietinum] gi|502133501|ref|XP_004501787.1| chr1 22154804 22173490 -
2 domain predictions
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Lj1g3v1819880.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357466041|ref|XP_003603305.1| chr1 22190438 22192042 -
2 domain predictions
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Lj1g3v1857400.1
n.a. Uncharacterized protein TCM_046906 [Theobroma cacao] gi|508782173|gb|EOY29429.1| chr1 22477266 22479482 -
2 domain predictions
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Lj1g3v1857410.1
n.a. n.a. chr1 22477913 22480465 +
2 domain predictions
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Lj1g3v2036740.1
n.a. PREDICTED: beta-adaptin-like protein A-like isoform X2 [Cicer arietinum] gi|502132000|ref|XP_004501190.1| chr1 24089767 24094140 -
2 domain predictions
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Lj1g3v2036740.2
n.a. PREDICTED: beta-adaptin-like protein A-like isoform X1 [Cicer arietinum] gi|502131998|ref|XP_004501189.1| chr1 24089767 24097662 -
2 domain predictions
 –
Lj1g3v2063270.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|358344748|ref|XP_003636449.1| chr1 24341530 24343221 -
2 domain predictions
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Lj1g3v2095600.1
n.a. Centrosomal protein [Medicago truncatula] gi|357514299|ref|XP_003627438.1| chr1 24837396 24839129 +
2 domain predictions
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Lj1g3v2095600.2
n.a. Centrosomal protein [Medicago truncatula] gi|357514299|ref|XP_003627438.1| chr1 24837954 24839129 +
2 domain predictions
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Lj1g3v2096250.1
n.a. PREDICTED: symplekin-like isoform X1 [Cicer arietinum] gi|502131681|ref|XP_004501065.1| chr1 25185453 25207026 -
2 domain predictions
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Lj1g3v2096250.2
n.a. PREDICTED: symplekin-like [Glycine max] gi|356507969|ref|XP_003522735.1| chr1 25201642 25207026 -
2 domain predictions
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Lj1g3v2372280.1
n.a. PREDICTED: importin-11-like [Glycine max] gi|356568126|ref|XP_003552264.1| chr1 27773600 27811071 -
2 domain predictions
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Lj1g3v2378100.1
n.a. PREDICTED: LOW QUALITY PROTEIN: nucleolar complex protein 3 homolog [Cicer arietinum] gi|502104325|ref|XP_004492503.1| chr1 28102710 28111441 -
2 domain predictions
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Lj1g3v2379130.1
n.a. Integrator complex subunit [Medicago truncatula] gi|357506205|ref|XP_003623391.1| chr1 28147271 28153216 +
2 domain predictions
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Lj1g3v2379130.3
n.a. Integrator complex subunit [Medicago truncatula] gi|357506205|ref|XP_003623391.1| chr1 28147271 28153216 +
2 domain predictions
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Lj1g3v2442920.1
n.a. PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] gi|356530199|ref|XP_003533671.1| chr1 28476375 28491751 -
2 domain predictions
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Lj1g3v2442920.2
n.a. PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] gi|356530199|ref|XP_003533671.1| chr1 28476375 28491751 -
2 domain predictions
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Lj1g3v2442920.4
n.a. PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] gi|356530199|ref|XP_003533671.1| chr1 28482022 28491751 -
2 domain predictions
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Lj1g3v2739210.1
n.a. PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1| chr1 31474305 31478297 +
2 domain predictions
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Lj1g3v2741270.1
n.a. PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1| chr1 31514990 31518305 +
2 domain predictions
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Lj1g3v2811580.1
n.a. PREDICTED: importin-11-like [Glycine max] gi|356568126|ref|XP_003552264.1| chr1 32095221 32095583 +
2 domain predictions
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Lj1g3v2811590.1
n.a. PREDICTED: importin-11-like [Glycine max] gi|356568126|ref|XP_003552264.1| chr1 32099431 32103952 +
2 domain predictions
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Lj1g3v3150000.1
n.a. PREDICTED: probable importin-7 homolog [Glycine max] gi|356568905|ref|XP_003552648.1| chr1 35843632 35852121 +
2 domain predictions
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Lj1g3v3150000.2
n.a. PREDICTED: probable importin-7 homolog [Glycine max] gi|356568905|ref|XP_003552648.1| chr1 35843700 35848328 +
2 domain predictions
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Lj1g3v3278880.1
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Glycine max] gi|356499610|ref|XP_003518631.1| chr1 36872559 36881770 +
2 domain predictions
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Lj1g3v3278880.2
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Glycine max] gi|356499610|ref|XP_003518631.1| chr1 36872559 36881770 +
2 domain predictions
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Lj1g3v3384770.1
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356517280|ref|XP_003527316.1| chr1 39012280 39017799 -
2 domain predictions
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Lj1g3v3407640.1
n.a. PREDICTED: coatomer subunit gamma-like [Glycine max] gi|356517094|ref|XP_003527225.1| chr1 39372886 39376012 +
2 domain predictions
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Lj1g3v3459850.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr1 40194576 40202272 +
2 domain predictions
 –