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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017986
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 823 results. Now displaying 3 of 17 with 50 rows per page. This search has taken 6.176s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0626400.1
n.a. WD-40 repeat family [Medicago truncatula] gi|358349511|ref|XP_003638779.1| chr1 8096708 8101621 +
3 domain predictions
1 GO term
Lj1g3v0626400.3
n.a. WD-40 repeat family [Medicago truncatula] gi|358349511|ref|XP_003638779.1| chr1 8096708 8101621 +
3 domain predictions
1 GO term
Lj1g3v0874380.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470113007|ref|XP_004292719.1| chr1 11233272 11237661 +
3 domain predictions
1 GO term
Lj1g3v1079520.1
n.a. WD40 repeats protein LjTTG1 [Lotus japonicus] gi|224994134|dbj|BAH28880.1| chr1 13436858 13438674 -
3 domain predictions
1 GO term
Lj1g3v1102750.2
n.a. Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508728342|gb|EOY20239.1| chr1 13871417 13873565 -
2 domain predictions
1 GO term
Lj1g3v1112870.1
n.a. PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max] gi|356509110|ref|XP_003523295.1| chr1 13941649 13946197 -
2 domain predictions
1 GO term
Lj1g3v1318120.1
n.a. PREDICTED: chromatin assembly factor 1 subunit FAS2-like [Cicer arietinum] gi|502139869|ref|XP_004503945.1| chr1 15924910 15926264 -
3 domain predictions
1 GO term
Lj1g3v1420300.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max] gi|356516478|ref|XP_003526921.1| chr1 17259292 17264231 -
3 domain predictions
1 GO term
Lj1g3v1420300.2
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max] gi|356516478|ref|XP_003526921.1| chr1 17259292 17264899 -
3 domain predictions
1 GO term
Lj1g3v1548700.1
n.a. PREDICTED: BEACH domain-containing protein lvsC-like [Cicer arietinum] gi|502133135|ref|XP_004501660.1| chr1 18464371 18497830 -
3 domain predictions
1 GO term
Lj1g3v1548700.3
n.a. PREDICTED: BEACH domain-containing protein lvsC-like [Cicer arietinum] gi|502133135|ref|XP_004501660.1| chr1 18464371 18501658 -
3 domain predictions
1 GO term
Lj1g3v1548900.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max] gi|356497716|ref|XP_003517705.1| chr1 18582655 18586219 -
3 domain predictions
1 GO term
Lj1g3v1561430.1
n.a. PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max] gi|356515704|ref|XP_003526538.1| chr1 18919584 18924586 -
3 domain predictions
1 GO term
Lj1g3v1720130.1
n.a. PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8-like [Glycine max] gi|356514489|ref|XP_003525938.1| chr1 20230146 20233825 +
3 domain predictions
1 GO term
Lj1g3v1720130.2
n.a. PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8-like [Glycine max] gi|356514489|ref|XP_003525938.1| chr1 20230146 20235347 +
3 domain predictions
1 GO term
Lj1g3v1733530.1
n.a. PREDICTED: cirhin-like isoform 1 [Glycine max] gi|356552266|ref|XP_003544489.1| chr1 20433286 20440115 -
3 domain predictions
1 GO term
Lj1g3v1816550.1
n.a. PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5-like [Cicer arietinum] gi|502132479|ref|XP_004501380.1| chr1 22081699 22090542 +
3 domain predictions
1 GO term
Lj1g3v1929090.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] gi|356507762|ref|XP_003522633.1| chr1 22844356 22853865 +
3 domain predictions
1 GO term
Lj1g3v1929090.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] gi|356507764|ref|XP_003522634.1| chr1 22844356 22853865 +
3 domain predictions
1 GO term
Lj1g3v2065470.1
n.a. n.a. chr1 24394140 24395881 +
3 domain predictions
1 GO term
Lj1g3v2065480.1
n.a. PREDICTED: lissencephaly-1 homolog [Glycine max] gi|356518336|ref|XP_003527835.1| chr1 24394292 24396488 -
3 domain predictions
1 GO term
Lj1g3v2124820.1
n.a. WD-40 repeat protein [Medicago truncatula] gi|357477601|ref|XP_003609086.1| chr1 25398286 25404713 -
3 domain predictions
1 GO term
Lj1g3v2280620.1
n.a. PREDICTED: WD repeat-containing protein DWA2-like [Glycine max] gi|356508796|ref|XP_003523140.1| chr1 26769861 26774991 +
3 domain predictions
1 GO term
Lj1g3v2360050.1
n.a. nucleotide binding protein [Cucumis melo subsp]. melo] gi|307135925|gb|ADN33787.1| chr1 27698110 27709551 -
2 domain predictions
1 GO term
Lj1g3v2442920.1
n.a. PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] gi|356530199|ref|XP_003533671.1| chr1 28476375 28491751 -
3 domain predictions
1 GO term
Lj1g3v2442920.2
n.a. PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] gi|356530199|ref|XP_003533671.1| chr1 28476375 28491751 -
3 domain predictions
1 GO term
Lj1g3v2442920.3
n.a. PREDICTED: regulatory-associated protein of TOR 1-like isoform X2 [Cicer arietinum] gi|502104405|ref|XP_004492529.1| chr1 28477343 28480199 -
3 domain predictions
1 GO term
Lj1g3v2580890.1
n.a. PREDICTED: transducin beta-like protein 2-like [Cicer arietinum] gi|502104745|ref|XP_004492634.1| chr1 29595927 29606228 +
3 domain predictions
1 GO term
Lj1g3v3171140.1
n.a. Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508713121|gb|EOY05018.1| chr1 35944961 35951738 -
3 domain predictions
1 GO term
Lj1g3v3329860.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 11 homolog [Cicer arietinum] gi|502181646|ref|XP_004516854.1| chr1 37830888 37840734 +
2 domain predictions
1 GO term
Lj1g3v3407660.1
n.a. G protein beta subunit [Pisum sativum] gi|5733806|gb|AAD49742.1|AF170921_1 chr1 39381359 39385749 -
3 domain predictions
1 GO term
Lj1g3v3458820.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum] gi|502180523|ref|XP_004516656.1| chr1 40180102 40184762 +
3 domain predictions
1 GO term
Lj1g3v3458830.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357505499|ref|XP_003623038.1| chr1 40182585 40184947 +
3 domain predictions
1 GO term
Lj1g3v3529510.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum] gi|502103542|ref|XP_004492306.1| chr1 40491135 40497012 -
3 domain predictions
1 GO term
Lj1g3v3646460.1
n.a. PREDICTED: WD repeat-containing protein 82-like [Cicer arietinum] gi|502107731|ref|XP_004493359.1| chr1 42102304 42115548 +
3 domain predictions
1 GO term
Lj1g3v3702650.1
n.a. PREDICTED: protein tipD-like [Cicer arietinum] gi|502133650|ref|XP_004501842.1| chr1 42629684 42632986 +
3 domain predictions
1 GO term
Lj1g3v3847220.1
n.a. PREDICTED: WD repeat domain-containing protein 83-like [Glycine max] gi|356525570|ref|XP_003531397.1| chr1 44176115 44177189 +
3 domain predictions
1 GO term
Lj1g3v3943610.1
n.a. PREDICTED: WD repeat-containing protein LWD1-like [Cicer arietinum] gi|502106978|ref|XP_004493117.1| chr1 46003730 46006084 -
3 domain predictions
1 GO term
Lj1g3v3975960.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform 1 [Glycine max] gi|356571748|ref|XP_003554035.1| chr1 47126108 47129879 +
3 domain predictions
1 GO term
Lj1g3v4079420.1
n.a. PREDICTED: aladin-like [Cicer arietinum] gi|502107581|ref|XP_004493309.1| chr1 48098677 48105495 -
2 domain predictions
1 GO term
Lj1g3v4404380.1
n.a. PREDICTED: autophagy-related protein 18g-like isoform X2 [Cicer arietinum] gi|502118016|ref|XP_004496059.1| chr1 51341725 51347545 -
2 domain predictions
1 GO term
Lj1g3v4528470.1
n.a. PREDICTED: WD repeat-containing protein 70-like [Glycine max] gi|356572299|ref|XP_003554306.1| chr1 53372148 53375578 +
3 domain predictions
1 GO term
Lj1g3v4528630.1
n.a. Activating molecule in BECN1-regulated autophagy protein [Medicago truncatula] gi|357510311|ref|XP_003625444.1| chr1 53442721 53450580 -
3 domain predictions
1 GO term
Lj1g3v4579450.2
n.a. PREDICTED: dystrophia myotonica WD repeat-containing protein-like isoform X1 [Cicer arietinum] gi|502111144|ref|XP_004493967.1| chr1 54608105 54613392 +
3 domain predictions
1 GO term
Lj1g3v4604360.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Cicer arietinum] gi|502111485|ref|XP_004494071.1| chr1 55069935 55074886 -
2 domain predictions
1 GO term
Lj1g3v4604360.2
n.a. PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X2 [Cicer arietinum] gi|502111488|ref|XP_004494072.1| chr1 55069935 55093117 -
2 domain predictions
1 GO term
Lj1g3v4668250.1
n.a. PREDICTED: WD repeat-containing protein 3-like [Glycine max] gi|356505281|ref|XP_003521420.1| chr1 55403784 55411705 +
2 domain predictions
1 GO term
Lj1g3v4717280.1
n.a. PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Cicer arietinum] gi|502111819|ref|XP_004494174.1| chr1 56238369 56244242 -
3 domain predictions
1 GO term
Lj1g3v4719640.1
n.a. PREDICTED: WD repeat-containing protein LWD1-like [Fragaria vesca subsp]. vesca] gi|470135453|ref|XP_004303529.1| chr1 56363407 56365347 -
3 domain predictions
1 GO term
Lj1g3v4719650.1
n.a. PREDICTED: WD repeat-containing protein LWD1-like [Fragaria vesca subsp]. vesca] gi|470135453|ref|XP_004303529.1| chr1 56364086 56365898 -
3 domain predictions
1 GO term