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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017986
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 823 results. Now displaying 5 of 17 with 50 rows per page. This search has taken 6.125s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0301720.1
n.a. PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Cicer arietinum] gi|502081240|ref|XP_004486807.1| chr3 2174698 2178284 -
2 domain predictions
1 GO term
Lj3g3v0301720.2
n.a. PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Cicer arietinum] gi|502081237|ref|XP_004486806.1| chr3 2174698 2178284 -
2 domain predictions
1 GO term
Lj3g3v0309020.1
n.a. PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max] gi|356550442|ref|XP_003543596.1| chr3 2293683 2300857 -
3 domain predictions
1 GO term
Lj3g3v0309020.2
n.a. PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max] gi|356550442|ref|XP_003543596.1| chr3 2293683 2300857 -
3 domain predictions
1 GO term
Lj3g3v0664850.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Glycine max] gi|356542264|ref|XP_003539589.1| chr3 7110182 7116190 -
3 domain predictions
1 GO term
Lj3g3v0766040.1
n.a. PREDICTED: chromatin assembly factor 1 subunit B-like [Glycine max] gi|356512829|ref|XP_003525118.1| chr3 9134674 9136821 +
3 domain predictions
1 GO term
Lj3g3v0807570.1
n.a. PREDICTED: retinoblastoma-binding protein 5-like [Glycine max] gi|356517730|ref|XP_003527539.1| chr3 9688818 9694068 +
3 domain predictions
1 GO term
Lj3g3v0934460.1
n.a. PREDICTED: THO complex subunit 3-like isoform X2 [Cicer arietinum] gi|502129124|ref|XP_004500191.1| chr3 11070224 11077678 +
3 domain predictions
1 GO term
Lj3g3v1145930.1
n.a. PREDICTED: peptidylprolyl isomerase domain and WD repeat-containing protein 1-like isoform X2 [Cicer arietinum] gi|502083631|ref|XP_004487517.1| chr3 15519682 15526218 -
3 domain predictions
1 GO term
Lj3g3v1296960.1
n.a. DDB1- and CUL4-associated factor [Medicago truncatula] gi|357453735|ref|XP_003597148.1| chr3 16670686 16671538 -
2 domain predictions
1 GO term
Lj3g3v1543510.1
n.a. PREDICTED: polycomb group protein FIE2-like [Glycine max] gi|356502840|ref|XP_003520223.1| chr3 19787497 19792291 +
3 domain predictions
1 GO term
Lj3g3v1544540.1
n.a. Autophagy-related protein [Medicago truncatula] gi|357452691|ref|XP_003596622.1| chr3 19809993 19815680 +
2 domain predictions
1 GO term
Lj3g3v1876080.1
n.a. PREDICTED: flowering time control protein FY-like [Cicer arietinum] gi|502158089|ref|XP_004511026.1| chr3 24097895 24112539 +
3 domain predictions
1 GO term
Lj3g3v1906530.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20 [Vitis vinifera] gi|225463838|ref|XP_002264396.1| chr3 24465764 24476848 -
3 domain predictions
1 GO term
Lj3g3v1933130.1
n.a. WD-repeat protein-like protein [Medicago truncatula] gi|357456029|ref|XP_003598295.1| chr3 24954524 24962314 -
3 domain predictions
1 GO term
Lj3g3v2172640.1
n.a. PREDICTED: topless-related protein 1-like [Glycine max] gi|356522325|ref|XP_003529797.1| chr3 26960865 26969514 +
3 domain predictions
1 GO term
Lj3g3v2172640.2
n.a. PREDICTED: protein TOPLESS-like [Glycine max] gi|356526242|ref|XP_003531727.1| chr3 26962785 26967287 +
3 domain predictions
1 GO term
Lj3g3v2225740.1
n.a. PREDICTED: WD repeat-containing protein 43-like [Glycine max] gi|356522359|ref|XP_003529814.1| chr3 27482704 27491126 -
2 domain predictions
1 GO term
Lj3g3v2248300.1
n.a. PREDICTED: coatomer subunit beta'-2-like [Glycine max] gi|356526157|ref|XP_003531686.1| chr3 27859686 27870396 -
3 domain predictions
1 GO term
Lj3g3v2414270.1
n.a. PREDICTED: protein SUPPRESSOR OF PHYA-105 1-like [Glycine max] gi|356522530|ref|XP_003529899.1| chr3 29871585 29877808 +
3 domain predictions
1 GO term
Lj3g3v2476570.1
n.a. transducin family protein [Arabidopsis lyrata subsp]. lyrata] gi|297828387|ref|XP_002882076.1| chr3 30368396 30390708 -
2 domain predictions
1 GO term
Lj3g3v2476570.2
n.a. transducin family protein [Arabidopsis lyrata subsp]. lyrata] gi|297828387|ref|XP_002882076.1| chr3 30368396 30390708 -
2 domain predictions
1 GO term
Lj3g3v2575570.1
n.a. p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|357450557|ref|XP_003595555.1| chr3 31260585 31260842 +
2 domain predictions
1 GO term
Lj3g3v2722600.2
n.a. Neurobeachin-like protein [Medicago truncatula] gi|358344469|ref|XP_003636312.1| chr3 33473840 33485192 +
3 domain predictions
1 GO term
Lj3g3v2722600.3
n.a. Neurobeachin-like protein [Medicago truncatula] gi|358344469|ref|XP_003636312.1| chr3 33473840 33485958 +
3 domain predictions
1 GO term
Lj3g3v2812190.1
n.a. PREDICTED: DDB1- and CUL4-associated factor 13-like [Glycine max] gi|356501101|ref|XP_003519367.1| chr3 34686328 34692958 -
3 domain predictions
1 GO term
Lj3g3v3026750.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Glycine max] gi|356544684|ref|XP_003540777.1| chr3 37769667 37780221 -
2 domain predictions
1 GO term
Lj3g3v3337440.1
n.a. PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] gi|225428610|ref|XP_002281238.1| chr3 40717809 40723485 -
3 domain predictions
1 GO term
Lj3g3v3337450.1
n.a. PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] gi|225428610|ref|XP_002281238.1| chr3 40718177 40723485 -
3 domain predictions
1 GO term
Lj3g3v3338300.1
n.a. PREDICTED: phospholipase A-2-activating protein-like [Cicer arietinum] gi|502149136|ref|XP_004507405.1| chr3 40894361 40905802 -
3 domain predictions
1 GO term
Lj3g3v3338610.1
n.a. PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Glycine max] gi|356538779|ref|XP_003537878.1| chr3 41065266 41068079 -
3 domain predictions
1 GO term
Lj3g3v3376170.1
n.a. coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1| chr3 41586490 41590168 -
3 domain predictions
1 GO term
Lj3g3v3376180.1
n.a. coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1| chr3 41588152 41597640 -
3 domain predictions
1 GO term
Lj3g3v3440320.1
n.a. PREDICTED: WD-40 repeat-containing protein MSI3-like [Glycine max] gi|356538449|ref|XP_003537716.1| chr3 42170938 42173227 +
3 domain predictions
1 GO term
Lj3g3v3464480.1
n.a. PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max] gi|356526043|ref|XP_003531629.1| chr3 42247404 42249600 -
2 domain predictions
1 GO term
Lj3g3v3640300.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr3 44463301 44465078 +
3 domain predictions
1 GO term
Lj4g3v0083880.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357448221|ref|XP_003594386.1| chr4 673918 674656 -
2 domain predictions
1 GO term
Lj4g3v0244120.1
n.a. WD-40 repeat protein [Pisum sativum] gi|69207914|gb|AAZ03745.1| chr4 2971371 2975664 +
3 domain predictions
1 GO term
Lj4g3v0244130.1
n.a. WD-40 repeat protein [Pisum sativum] gi|69207914|gb|AAZ03745.1| chr4 2971371 2976847 +
3 domain predictions
1 GO term
Lj4g3v0338180.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Glycine max] gi|356558620|ref|XP_003547602.1| chr4 4284844 4290300 -
3 domain predictions
1 GO term
Lj4g3v0445700.1
n.a. PREDICTED: telomerase Cajal body protein 1-like [Cicer arietinum] gi|502142475|ref|XP_004504976.1| chr4 5971676 5978101 -
3 domain predictions
1 GO term
Lj4g3v1107950.1
n.a. This gene may be cut off [Arabidopsis thaliana] gi|9797764|gb|AAF98582.1|AC013427_25 chr4 16427037 16438124 +
2 domain predictions
1 GO term
Lj4g3v1287260.1
n.a. PREDICTED: protein FIZZY-RELATED 2-like [Glycine max] gi|356565305|ref|XP_003550882.1| chr4 18949765 18956385 -
3 domain predictions
1 GO term
Lj4g3v1327590.1
n.a. cell cycle switch protein CCS52A [Lotus japonicus] gi|66932877|gb|AAY58271.1| chr4 19559207 19565171 +
3 domain predictions
1 GO term
Lj4g3v1327590.2
n.a. cell cycle switch protein CCS52A [Lotus japonicus] gi|66932877|gb|AAY58271.1| chr4 19559207 19570550 +
3 domain predictions
1 GO term
Lj4g3v1399990.1
n.a. PREDICTED: protein tipD-like [Glycine max] gi|356513836|ref|XP_003525614.1| chr4 22068248 22071076 -
3 domain predictions
1 GO term
Lj4g3v1410010.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356565258|ref|XP_003550859.1| chr4 22089020 22091240 +
3 domain predictions
1 GO term
Lj4g3v1477240.1
n.a. PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1| chr4 22623840 22632951 -
3 domain predictions
1 GO term
Lj4g3v1560510.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357477279|ref|XP_003608925.1| chr4 23189631 23192082 +
3 domain predictions
1 GO term
Lj4g3v1560520.1
n.a. n.a. chr4 23190503 23192972 -
3 domain predictions
1 GO term