Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:1.10.150.20
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 76 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.024s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0038509.1
n.a. PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer arietinum] gi|502154632|ref|XP_004509767.1| chr0 12502182 12522719 +
1 domain prediction
 –
Lj0g3v0043809.1
n.a. PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like [Glycine max] gi|356498232|ref|XP_003517957.1| chr0 14389290 14400508 +
1 domain prediction
 –
Lj0g3v0122989.1
n.a. PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Glycine max] gi|356514404|ref|XP_003525896.1| chr0 55063165 55077351 +
1 domain prediction
 –
Lj0g3v0200599.1
n.a. PREDICTED: 5'-3' exonuclease-like [Glycine max] gi|356561357|ref|XP_003548949.1| chr0 98958487 98961113 -
1 domain prediction
 –
Lj0g3v0245739.1
n.a. PREDICTED: DNA polymerase I-like [Glycine max] gi|356500355|ref|XP_003518998.1| chr0 127419365 127421922 -
1 domain prediction
 –
Lj0g3v0350249.1
n.a. PREDICTED: DNA polymerase theta-like [Cicer arietinum] gi|502124469|ref|XP_004498542.1| chr0 184001670 184012120 -
1 domain prediction
 –
Lj0g3v0359589.1
n.a. PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1| chr0 189299157 189307621 +
1 domain prediction
 –
Lj1g3v0049850.1
n.a. PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1| chr1 244558 260965 +
1 domain prediction
 –
Lj1g3v0112930.1
n.a. meiotic recombination protein DMC1 homolog [Glycine max] gi|351726994|ref|NP_001238425.1| chr1 1197404 1200941 -
1 domain prediction
 –
Lj1g3v0627680.1
n.a. PREDICTED: DNA polymerase lambda-like isoform X1 [Cicer arietinum] gi|502181313|ref|XP_004516776.1| chr1 8233677 8249407 -
1 domain prediction
 –
Lj1g3v2624840.1
n.a. Flap endonuclease GEN-like protein [Medicago truncatula] gi|357507117|ref|XP_003623847.1| chr1 30401263 30407172 -
1 domain prediction
 –
Lj1g3v3089430.1
n.a. PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X2 [Cicer arietinum] gi|502102072|ref|XP_004491958.1| chr1 35072292 35081039 +
1 domain prediction
 –
Lj2g3v0286920.1
n.a. PREDICTED: flap endonuclease GEN-like 2-like [Cicer arietinum] gi|502175270|ref|XP_004515700.1| chr2 4847045 4861167 +
1 domain prediction
 –
Lj2g3v1203430.1
n.a. PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer arietinum] gi|502154632|ref|XP_004509767.1| chr2 19336237 19347538 -
1 domain prediction
 –
Lj2g3v1203430.2
n.a. PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer arietinum] gi|502154632|ref|XP_004509767.1| chr2 19340340 19347538 -
1 domain prediction
 –
Lj2g3v3138170.1
n.a. DNA polymerase [Medicago truncatula] gi|357494395|ref|XP_003617486.1| chr2 40544139 40547309 +
1 domain prediction
 –
Lj3g3v0966400.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356556951|ref|XP_003546783.1| chr3 13122548 13130884 +
1 domain prediction
 –
Lj3g3v2737590.1
n.a. PREDICTED: DNA repair protein RAD51 homolog 3-like isoform X1 [Cicer arietinum] gi|502146616|ref|XP_004506531.1| chr3 33835081 33838711 -
1 domain prediction
 –
Lj3g3v2737590.2
n.a. PREDICTED: DNA repair protein RAD51 homolog 3-like isoform X1 [Cicer arietinum] gi|502146616|ref|XP_004506531.1| chr3 33835081 33838711 -
1 domain prediction
 –
Lj4g3v0451050.1
n.a. PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1| chr4 6567550 6573184 +
1 domain prediction
 –
Lj4g3v0451050.2
n.a. PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1| chr4 6567550 6572201 +
1 domain prediction
 –
Lj4g3v0451050.3
n.a. PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1| chr4 6567550 6572885 +
1 domain prediction
 –
Lj4g3v0523540.1
n.a. PREDICTED: DNA polymerase I-like isoform X2 [Cicer arietinum] gi|502142965|ref|XP_004505167.1| chr4 8844573 8846852 +
1 domain prediction
 –
Lj4g3v0523550.2
n.a. PREDICTED: DNA polymerase I-like isoform X2 [Cicer arietinum] gi|502142965|ref|XP_004505167.1| chr4 8845803 8850019 +
1 domain prediction
 –
Lj4g3v2215340.1
n.a. PREDICTED: DNA repair protein RAD51 homolog 1-like [Cicer arietinum] gi|502150634|ref|XP_004508049.1| chr4 30677808 30680379 -
1 domain prediction
 –
Lj4g3v2628750.1
n.a. PREDICTED: exonuclease 1-like [Cicer arietinum] gi|502140539|ref|XP_004504251.1| chr4 35784169 35789301 -
1 domain prediction
 –
Lj5g3v1533400.3
n.a. PREDICTED: flap endonuclease 1-like isoform X3 [Cicer arietinum] gi|502117445|ref|XP_004495823.1| chr5 22465974 22470380 +
1 domain prediction
 –
Lj5g3v2045260.1
n.a. PREDICTED: meiotic recombination protein DMC1 homolog [Cicer arietinum] gi|502119553|ref|XP_004496658.1| chr5 29037940 29040815 +
1 domain prediction
 –
Lj6g3v1139660.1
n.a. PREDICTED: translocation protein SEC63 homolog [Glycine max] gi|356530479|ref|XP_003533808.1| chr6 14033804 14040891 -
1 domain prediction
 –
LotjaGi1g1v0035300_LC.1
n.a. DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7K3G7|G7K3G7_MEDTR PolI-like B DNA polymerase; Found in the gene: LotjaGi1g1v0035300_LC LjG1.1_chr1 4741494 4748257 -
1 domain prediction
 –
LotjaGi1g1v0188900.1
n.a. ATP-dependent RNA helicase; TAIR: AT5G61140.2 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14; TrEMBL-Plants: tr|K7KW51|K7KW51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0188900 LjG1.1_chr1 37051485 37100406 +
1 domain prediction
 –
LotjaGi1g1v0188900.2
n.a. ATP-dependent RNA helicase; TAIR: AT5G61140.2 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14; TrEMBL-Plants: tr|A0A0B2Q999|A0A0B2Q999_GLYSO Activating signal cointegrator 1 complex subunit 3; Found in the gene: LotjaGi1g1v0188900 LjG1.1_chr1 37051695 37095471 +
1 domain prediction
 –
LotjaGi1g1v0198600.1
n.a. DNA helicase; TAIR: AT4G32700.2 MUS308 and mammalian DNA polymerase-like protein; Swiss-Prot: sp|Q588V7|TEB_ARATH Helicase and polymerase-containing protein TEBICHI; TrEMBL-Plants: tr|K7M6P7|K7M6P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0198600 LjG1.1_chr1 41764309 41801739 -
1 domain prediction
 –
LotjaGi2g1v0098200.1
n.a. 5'-3' exonuclease; TAIR: AT1G34380.2 5'-3' exonuclease family protein; Swiss-Prot: sp|O67550|EX53_AQUAE 5'-3' exonuclease; TrEMBL-Plants: tr|K7MHK5|K7MHK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0098200 LjG1.1_chr2 32089881 32108363 -
1 domain prediction
 –
LotjaGi2g1v0289500.1
n.a. DNA-directed RNA polymerase; TAIR: AT1G68990.1 male gametophyte defective 3; Swiss-Prot: sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial; TrEMBL-Plants: tr|A0A0L9TN70|A0A0L9TN70_PHAAN DNA-directed RNA polymerase; Found in the gene: LotjaGi2g1v0289500 LjG1.1_chr2 76263469 76275343 -
1 domain prediction
 –
LotjaGi2g1v0314500.1
n.a. DNA polymerase lambda; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|I1JCZ1|I1JCZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 78998143 +
1 domain prediction
 –
LotjaGi2g1v0314500.2
n.a. DNA polymerase lambda-like protein; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|A0A072TY09|A0A072TY09_MEDTR DNA polymerase lambda-like protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 78998143 +
1 domain prediction
 –
LotjaGi2g1v0314500.3
n.a. DNA polymerase lambda-like protein; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|A0A072TY09|A0A072TY09_MEDTR DNA polymerase lambda-like protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 79002829 +
1 domain prediction
 –
LotjaGi2g1v0314500.4
n.a. DNA polymerase lambda; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|I1JCZ1|I1JCZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 79002829 +
1 domain prediction
 –
LotjaGi2g1v0418900.1
n.a. DNA repair endonuclease UVH1-like protein; TAIR: AT5G41150.1 Restriction endonuclease, type II-like superfamily protein; Swiss-Prot: sp|Q9LKI5|XPF_ARATH DNA repair endonuclease UVH1; TrEMBL-Plants: tr|K7LMX6|K7LMX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0418900 LjG1.1_chr2 91727196 91732499 +
1 domain prediction
 –
LotjaGi2g1v0461300.1
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437511 95456871 +
1 domain prediction
 –
LotjaGi2g1v0461300.2
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437558 95455220 +
1 domain prediction
 –
LotjaGi2g1v0461300.3
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437598 95456661 +
1 domain prediction
 –
LotjaGi3g1v0141500.1
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748763 18757429 +
1 domain prediction
 –
LotjaGi3g1v0141500.2
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748967 18755959 +
1 domain prediction
 –
LotjaGi3g1v0141500.3
n.a. ATP-dependent helicase hrq1; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|G7IJ55|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748967 18756137 +
1 domain prediction
 –
LotjaGi3g1v0141500.4
n.a. ATP-dependent RNA helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748997 18755959 +
1 domain prediction
 –
LotjaGi3g1v0141500.5
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|G7IJ55|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18754139 18755959 +
1 domain prediction
 –
LotjaGi3g1v0337100.1
n.a. Deoxycytidine kinase; TAIR: AT1G72040.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P27707|DCK_HUMAN Deoxycytidine kinase; TrEMBL-Plants: tr|U5U2L0|U5U2L0_PHAVU Deoxynucleoside kinase family; Found in the gene: LotjaGi3g1v0337100 LjG1.1_chr3 70782031 70796514 +
1 domain prediction
 –
LotjaGi3g1v0337100.2
n.a. Deoxycytidine kinase; TAIR: AT1G72040.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P27707|DCK_HUMAN Deoxycytidine kinase; TrEMBL-Plants: tr|U5U2L0|U5U2L0_PHAVU Deoxynucleoside kinase family; Found in the gene: LotjaGi3g1v0337100 LjG1.1_chr3 70782035 70787572 +
1 domain prediction
 –