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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017877
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 108 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.045s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0042839.1
n.a. PREDICTED: transcription factor CPC [Vitis vinifera] gi|225444383|ref|XP_002267669.1| chr0 14076507 14077154 -
2 domain predictions
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Lj0g3v0042839.2
n.a. PREDICTED: transcription factor CPC-like [Glycine max] gi|356543732|ref|XP_003540314.1| chr0 14076507 14078119 -
2 domain predictions
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Lj0g3v0055089.1
n.a. trihelix transcription factor [Glycine max] gi|351727268|ref|NP_001236643.1| chr0 17745847 17748597 -
2 domain predictions
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Lj0g3v0061139.1
n.a. sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|30688985|ref|NP_194855.2| chr0 20447636 20451829 +
2 domain predictions
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Lj0g3v0089699.1
n.a. MYB transcription factor MYB109 [Glycine max] gi|351727817|ref|NP_001235894.1| chr0 36855445 36857239 -
2 domain predictions
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Lj0g3v0116239.1
n.a. protein TRF-like 10 [Arabidopsis thaliana] gi|30680203|ref|NP_195998.2| chr0 51095696 51102635 +
2 domain predictions
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Lj0g3v0116239.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508701719|gb|EOX93615.1| chr0 51095696 51102635 +
2 domain predictions
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Lj0g3v0117159.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
2 domain predictions
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Lj0g3v0117159.2
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
2 domain predictions
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Lj0g3v0117159.3
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
2 domain predictions
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Lj0g3v0130139.1
n.a. GT-2 factor [Medicago truncatula] gi|357443673|ref|XP_003592114.1| chr0 58981434 58984521 +
2 domain predictions
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Lj0g3v0166299.1
n.a. MYB transcription factor MYB185 [Glycine max] gi|377823737|ref|NP_001235820.1| chr0 79093217 79093748 -
2 domain predictions
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Lj0g3v0196149.1
n.a. Helicase/SANT-associated, DNA binding protein [Arabidopsis thaliana] gi|42565171|ref|NP_189132.2| chr0 95644606 95657071 +
2 domain predictions
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Lj0g3v0196179.1
n.a. homeodomain-like superfamily protein [Arabidopsis thaliana] gi|15230214|ref|NP_189130.1| chr0 95672642 95674777 -
2 domain predictions
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Lj0g3v0196189.2
n.a. homeodomain-like superfamily protein [Arabidopsis thaliana] gi|15230214|ref|NP_189130.1| chr0 95673491 95674777 -
2 domain predictions
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Lj0g3v0260369.1
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
2 domain predictions
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Lj0g3v0260369.2
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
2 domain predictions
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Lj0g3v0261399.1
n.a. PREDICTED: ribonuclease J-like isoform X1 [Cicer arietinum] gi|502130444|ref|XP_004500652.1| chr0 135457755 135468444 +
2 domain predictions
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Lj0g3v0261399.2
n.a. PREDICTED: ribonuclease J-like isoform X2 [Cicer arietinum] gi|502130447|ref|XP_004500653.1| chr0 135463423 135468444 +
2 domain predictions
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Lj0g3v0280579.1
n.a. MYB transcription factor MYB185 [Glycine max] gi|377823737|ref|NP_001235820.1| chr0 145500754 145501415 +
2 domain predictions
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Lj0g3v0292769.1
n.a. PREDICTED: trihelix transcription factor GT-3b-like [Cicer arietinum] gi|502147363|ref|XP_004506754.1| chr0 151958701 151960251 -
2 domain predictions
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Lj0g3v0303659.1
n.a. PREDICTED: trihelix transcription factor GT-2 [Glycine max] gi|356499548|ref|XP_003518601.1| chr0 158137590 158141778 +
2 domain predictions
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Lj0g3v0324039.1
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
2 domain predictions
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Lj0g3v0324039.2
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
2 domain predictions
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Lj1g3v1265910.1
n.a. PREDICTED: trihelix transcription factor GT-2-like [Glycine max] gi|356530726|ref|XP_003533931.1| chr1 15210320 15212869 -
2 domain predictions
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Lj1g3v2327880.1
n.a. PREDICTED: trihelix transcription factor GT-3b-like [Cicer arietinum] gi|502167679|ref|XP_004514215.1| chr1 27611900 27613898 +
2 domain predictions
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Lj1g3v3137850.1
n.a. GT-2-related protein [Arabidopsis thaliana] gi|30685749|ref|NP_850213.1| chr1 35728477 35732899 +
2 domain predictions
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Lj1g3v3182310.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr1 36146046 36147185 +
2 domain predictions
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Lj1g3v3268860.1
n.a. Homeodomain-like [Medicago truncatula] gi|87240806|gb|ABD32664.1| chr1 36859219 36860225 -
2 domain predictions
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Lj1g3v4024040.2
n.a. PREDICTED: dnaJ homolog subfamily C member 1-like [Vitis vinifera] gi|225430734|ref|XP_002266235.1| chr1 47616108 47619631 -
2 domain predictions
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Lj1g3v4697600.1
n.a. PREDICTED: trihelix transcription factor GT-2-like [Glycine max] gi|356570829|ref|XP_003553586.1| chr1 55988720 55992105 -
2 domain predictions
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Lj2g3v1534080.1
n.a. PREDICTED: myb-related protein 308-like [Glycine max] gi|356564624|ref|XP_003550551.1| chr2 24079072 24081926 -
2 domain predictions
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Lj2g3v1534090.1
n.a. PREDICTED: myb-related protein 308-like [Glycine max] gi|356564624|ref|XP_003550551.1| chr2 24081047 24081926 -
2 domain predictions
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Lj2g3v1550000.1
n.a. PREDICTED: trihelix transcription factor GT-3b-like [Glycine max] gi|356495258|ref|XP_003516496.1| chr2 24491370 24493608 +
2 domain predictions
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Lj3g3v0718210.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr3 7765383 7766854 -
2 domain predictions
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Lj3g3v0718220.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr3 7765479 7768031 -
2 domain predictions
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Lj3g3v2901830.1
n.a. PREDICTED: transcription factor CPC [Glycine max] gi|356542842|ref|XP_003539874.1| chr3 35959446 35960969 +
2 domain predictions
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Lj3g3v3701240.1
n.a. Homeodomain-like [Medicago truncatula] gi|87240806|gb|ABD32664.1| chr3 44940857 44942230 +
2 domain predictions
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Lj4g3v0805590.1
n.a. MYB transcription factor MYB178 [Glycine max] gi|351723093|ref|NP_001235731.1| chr4 12639837 12641694 -
2 domain predictions
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Lj4g3v1630970.1
n.a. R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330294|gb|AFK29425.1| chr4 23928916 23930504 -
2 domain predictions
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Lj4g3v2376270.1
n.a. PREDICTED: myb-like protein O-like [Cicer arietinum] gi|502151240|ref|XP_004508343.1| chr4 32946020 32947714 +
2 domain predictions
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Lj4g3v2604370.1
n.a. Homeodomain-like [Medicago truncatula] gi|87240806|gb|ABD32664.1| chr4 35174251 35175682 -
2 domain predictions
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Lj4g3v2691870.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356525975|ref|XP_003531595.1| chr4 36263484 36264586 +
2 domain predictions
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Lj4g3v2871910.1
n.a. GT-2-related protein [Arabidopsis thaliana] gi|30685749|ref|NP_850213.1| chr4 38424566 38427458 +
2 domain predictions
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Lj5g3v0712220.1
n.a. PREDICTED: trihelix transcription factor GT-2-like [Glycine max] gi|356533535|ref|XP_003535319.1| chr5 10624690 10629444 -
2 domain predictions
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Lj5g3v0921010.1
n.a. PREDICTED: helicase SRCAP-like [Cicer arietinum] gi|502122805|ref|XP_004497900.1| chr5 13612718 13643190 +
2 domain predictions
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Lj5g3v1770430.1
n.a. PREDICTED: trihelix transcription factor GT-2-like [Glycine max] gi|356574655|ref|XP_003555461.1| chr5 25123988 25127079 +
2 domain predictions
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Lj5g3v1949840.1
n.a. PREDICTED: trihelix transcription factor GT-2-like [Cicer arietinum] gi|502119002|ref|XP_004496472.1| chr5 27527874 27531723 +
2 domain predictions
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Lj5g3v1949850.1
n.a. n.a. chr5 27529474 27531723 -
2 domain predictions
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Lj5g3v2237580.1
n.a. syringolide-induced protein 1-3-1B [Glycine max] gi|351725743|ref|NP_001237103.1| chr5 32082780 32084776 +
2 domain predictions
 –