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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000210
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 228 results. Now displaying 5 of 5 with 50 rows per page. This search has taken 5.863s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0323300.2
n.a. BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 LjG1.1_chr5 64177173 64183167 +
3 domain predictions
1 GO term
LotjaGi5g1v0323300.3
n.a. BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 LjG1.1_chr5 64177210 64183232 +
3 domain predictions
1 GO term
LotjaGi5g1v0323300.4
n.a. BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 LjG1.1_chr5 64178766 64182875 +
3 domain predictions
1 GO term
LotjaGi5g1v0323300.5
n.a. BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 LjG1.1_chr5 64179026 64182875 +
3 domain predictions
1 GO term
LotjaGi5g1v0323300.6
n.a. BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 LjG1.1_chr5 64179026 64182970 +
3 domain predictions
1 GO term
LotjaGi5g1v0323300.7
n.a. BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 LjG1.1_chr5 64180192 64182875 +
3 domain predictions
1 GO term
LotjaGi5g1v0323300.8
n.a. BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 LjG1.1_chr5 64180220 64182875 +
3 domain predictions
1 GO term
LotjaGi6g1v0023500.1
n.a. Ankyrin repeat and BTB/POZ domain protein; TAIR: AT2G04740.1 ankyrin repeat family protein; Swiss-Prot: sp|Q9SJ85|Y2474_ARATH BTB/POZ domain-containing protein At2g04740; TrEMBL-Plants: tr|A0A151R0P2|A0A151R0P2_CAJCA Ankyrin repeat and BTB/POZ domain-containing protein 1; Found in the gene: LotjaGi6g1v0023500 LjG1.1_chr6 4358436 4363663 -
4 domain predictions
1 GO term
LotjaGi6g1v0023500.2
n.a. Ankyrin repeat and BTB/POZ domain protein; TAIR: AT2G04740.1 ankyrin repeat family protein; Swiss-Prot: sp|Q9SJ85|Y2474_ARATH BTB/POZ domain-containing protein At2g04740; TrEMBL-Plants: tr|A0A151R0P2|A0A151R0P2_CAJCA Ankyrin repeat and BTB/POZ domain-containing protein 1; Found in the gene: LotjaGi6g1v0023500 LjG1.1_chr6 4358930 4363303 -
4 domain predictions
1 GO term
LotjaGi6g1v0045200.1
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT2G30520.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q682S0|RPT2_ARATH Root phototropism protein 2; TrEMBL-Plants: tr|I1MZN6|I1MZN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045200 LjG1.1_chr6 8453465 8457782 -
4 domain predictions
1 GO term
LotjaGi6g1v0067400.1
n.a. BTB-POZ and MATH domain protein; TAIR: AT2G39760.1 BTB/POZ/MATH-domains containing protein; Swiss-Prot: sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3; TrEMBL-Plants: tr|I1LMJ1|I1LMJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0067400 LjG1.1_chr6 12783862 12794257 -
4 domain predictions
1 GO term
LotjaGi6g1v0067400.2
n.a. BTB-POZ and MATH domain protein; TAIR: AT2G39760.1 BTB/POZ/MATH-domains containing protein; Swiss-Prot: sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3; TrEMBL-Plants: tr|I1LMJ1|I1LMJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0067400 LjG1.1_chr6 12784298 12794287 -
4 domain predictions
1 GO term
LotjaGi6g1v0067400.4
n.a. BTB-POZ and MATH domain protein; TAIR: AT2G39760.2 BTB/POZ/MATH-domains containing protein; Swiss-Prot: sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3; TrEMBL-Plants: tr|I1LMJ1|I1LMJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0067400 LjG1.1_chr6 12792092 12794025 -
4 domain predictions
1 GO term
LotjaGi6g1v0082800.1
n.a. BTB/POZ domain-containing protein; TAIR: AT3G56230.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9LYL9|Y3623_ARATH BTB/POZ domain-containing protein At3g56230; TrEMBL-Plants: tr|A0A0B2P690|A0A0B2P690_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi6g1v0082800 LjG1.1_chr6 16144625 16148959 -
2 domain predictions
1 GO term
LotjaGi6g1v0082800.2
n.a. BTB/POZ domain protein; TAIR: AT3G56230.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9LYL9|Y3623_ARATH BTB/POZ domain-containing protein At3g56230; TrEMBL-Plants: tr|G7J2Y2|G7J2Y2_MEDTR BTB/POZ domain protein; Found in the gene: LotjaGi6g1v0082800 LjG1.1_chr6 16144632 16148865 -
4 domain predictions
1 GO term
LotjaGi6g1v0126300.1
n.a. Ethylene-overproduction protein 1; TAIR: AT3G51770.2 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1; TrEMBL-Plants: tr|K7MQ77|K7MQ77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0126300 LjG1.1_chr6 32652755 32665438 +
3 domain predictions
1 GO term
LotjaGi6g1v0138400.1
n.a. BTB/POZ domain-containing protein; TAIR: AT1G55760.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q680K8|Y1576_ARATH BTB/POZ domain-containing protein At1g55760; TrEMBL-Plants: tr|I3TAL9|I3TAL9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0138400 LjG1.1_chr6 40318913 40323268 -
4 domain predictions
1 GO term
LotjaGi6g1v0138400.2
n.a. BTB/POZ domain-containing protein; TAIR: AT1G55760.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q680K8|Y1576_ARATH BTB/POZ domain-containing protein At1g55760; TrEMBL-Plants: tr|I3TAL9|I3TAL9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0138400 LjG1.1_chr6 40320365 40322308 -
4 domain predictions
1 GO term
LotjaGi6g1v0212800.1
n.a. BTB/POZ domain-containing protein; TAIR: AT1G30440.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440; TrEMBL-Plants: tr|A2Q365|A2Q365_MEDTR BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3; Found in the gene: LotjaGi6g1v0212800 LjG1.1_chr6 51060252 51065379 -
3 domain predictions
1 GO term
LotjaGi6g1v0212800.2
n.a. BTB/POZ domain-containing protein; TAIR: AT1G30440.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440; TrEMBL-Plants: tr|A2Q365|A2Q365_MEDTR BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3; Found in the gene: LotjaGi6g1v0212800 LjG1.1_chr6 51060758 51064070 -
3 domain predictions
1 GO term
LotjaGi6g1v0275700.1
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|B8XQT5|B8XQT5_SOYBN NPR1-1 protein; Found in the gene: LotjaGi6g1v0275700 LjG1.1_chr6 59254853 59265161 +
4 domain predictions
1 GO term
LotjaGi6g1v0275700.2
n.a. Regulatory protein NPR1; TAIR: AT5G45110.2 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|A0A151REX1|A0A151REX1_CAJCA Regulatory protein NPR1; Found in the gene: LotjaGi6g1v0275700 LjG1.1_chr6 59260691 59264123 +
4 domain predictions
1 GO term
LotjaGi6g1v0275700.3
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|B8XQT5|B8XQT5_SOYBN NPR1-1 protein; Found in the gene: LotjaGi6g1v0275700 LjG1.1_chr6 59260691 59264646 +
4 domain predictions
1 GO term
LotjaGi6g1v0281300.1
n.a. BTB/POZ domain-containing protein; TAIR: AT5G47800.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800; TrEMBL-Plants: tr|A0A0B2S7S8|A0A0B2S7S8_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi6g1v0281300 LjG1.1_chr6 59772013 59774667 -
2 domain predictions
1 GO term
LotjaGi6g1v0313100.2
n.a. BTB/POZ domain-containing protein family; TAIR: AT5G03250.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250; TrEMBL-Plants: tr|G7IP40|G7IP40_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi6g1v0313100 LjG1.1_chr6 63117486 63120376 -
3 domain predictions
1 GO term
LotjaGi6g1v0350200.1
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT5G64330.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3; TrEMBL-Plants: tr|I1MDZ4|I1MDZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0350200 LjG1.1_chr6 66239495 66243562 -
4 domain predictions
1 GO term
LotjaGi6g1v0350200.3
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT5G64330.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3; TrEMBL-Plants: tr|I1MDZ4|I1MDZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0350200 LjG1.1_chr6 66241007 66242971 -
4 domain predictions
1 GO term
LotjaGi6g1v0350200.4
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT5G64330.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3; TrEMBL-Plants: tr|I1MDZ4|I1MDZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0350200 LjG1.1_chr6 66241007 66242971 -
4 domain predictions
1 GO term