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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001806
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We have found 282 results. Now displaying 6 of 6 with 50 rows per page. This search has taken 5.320s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0449800.4
n.a. Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P29687|RAB5_TOBAC Ras-related protein Rab5; TrEMBL-Plants: tr|G7L8X6|G7L8X6_MEDTR RAB GTPase-like protein A5B; Found in the gene: LotjaGi4g1v0449800 LjG1.1_chr4 82203908 82205915 -
2 domain predictions
2 GO terms
LotjaGi4g1v0463500.2
n.a. Ras-related protein Rab-25; TAIR: AT1G18200.1 Rab GTPase-like A1I protein; Swiss-Prot: sp|Q9C9U7|RAA6A_ARATH Ras-related protein RABA6a; TrEMBL-Plants: tr|A0A1J7FNT8|A0A1J7FNT8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0463500 LjG1.1_chr4 83357382 83359771 -
2 domain predictions
2 GO terms
LotjaGi5g1v0069500.1
n.a. Ras-related protein-like protein; TAIR: AT3G53610.1 RAB GTPase homolog 8; Swiss-Prot: sp|O24466|RAE1A_ARATH Ras-related protein RABE1a; TrEMBL-Plants: tr|I3SBM4|I3SBM4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0069500 LjG1.1_chr5 11503343 11510333 +
2 domain predictions
2 GO terms
LotjaGi5g1v0084800.1
n.a. Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|A0A0R4J442|A0A0R4J442_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0084800 LjG1.1_chr5 14556164 14559070 -
2 domain predictions
2 GO terms
LotjaGi5g1v0144200.1
n.a. Ras-related protein Rab-25; TAIR: AT3G12160.1 RAB GTPase homolog A4D; Swiss-Prot: sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d; TrEMBL-Plants: tr|I3SB39|I3SB39_MEDTR RAB GTPase-like protein A1D; Found in the gene: LotjaGi5g1v0144200 LjG1.1_chr5 36245461 36259056 +
2 domain predictions
2 GO terms
LotjaGi5g1v0166400.1
n.a. Mitochondrial Rho GTPase; TAIR: AT3G63150.1 MIRO-related GTP-ase 2; Swiss-Prot: sp|F4J0W4|MIRO2_ARATH Mitochondrial Rho GTPase 2; TrEMBL-Plants: tr|A0A0R0HXF0|A0A0R0HXF0_SOYBN Mitochondrial Rho GTPase; Found in the gene: LotjaGi5g1v0166400 LjG1.1_chr5 42486616 42497242 +
2 domain predictions
2 GO terms
LotjaGi5g1v0166400.2
n.a. Mitochondrial Rho GTPase; TAIR: AT3G63150.1 MIRO-related GTP-ase 2; Swiss-Prot: sp|F4J0W4|MIRO2_ARATH Mitochondrial Rho GTPase 2; TrEMBL-Plants: tr|I1L835|I1L835_SOYBN Mitochondrial Rho GTPase; Found in the gene: LotjaGi5g1v0166400 LjG1.1_chr5 42488344 42496390 +
2 domain predictions
2 GO terms
LotjaGi5g1v0202700.1
n.a. Ras family; TAIR: AT5G47520.1 RAB GTPase homolog A5A; Swiss-Prot: sp|Q9FGK5|RAA5A_ARATH Ras-related protein RABA5a; TrEMBL-Plants: tr|Q40200|Q40200_LOTJA RAB11J; Found in the gene: LotjaGi5g1v0202700 LjG1.1_chr5 50303855 50316304 -
2 domain predictions
2 GO terms
LotjaGi5g1v0202700.2
n.a. Ras family; TAIR: AT5G47520.1 RAB GTPase homolog A5A; Swiss-Prot: sp|Q9FGK5|RAA5A_ARATH Ras-related protein RABA5a; TrEMBL-Plants: tr|Q40200|Q40200_LOTJA RAB11J; Found in the gene: LotjaGi5g1v0202700 LjG1.1_chr5 50304428 50316098 -
2 domain predictions
2 GO terms
LotjaGi5g1v0202700.3
n.a. Ras family; TAIR: AT5G47520.1 RAB GTPase homolog A5A; Swiss-Prot: sp|Q9FGK5|RAA5A_ARATH Ras-related protein RABA5a; TrEMBL-Plants: tr|Q40200|Q40200_LOTJA RAB11J; Found in the gene: LotjaGi5g1v0202700 LjG1.1_chr5 50304638 50306185 -
2 domain predictions
2 GO terms
LotjaGi5g1v0220400.1
n.a. Mitochondrial Rho GTPase; TAIR: AT5G27540.1 MIRO-related GTP-ase 1; Swiss-Prot: sp|Q8RXF8|MIRO1_ARATH Mitochondrial Rho GTPase 1; TrEMBL-Plants: tr|A0A1J7FS16|A0A1J7FS16_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0220400 LjG1.1_chr5 52686797 52693778 +
2 domain predictions
2 GO terms
LotjaGi5g1v0254400.1
n.a. Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|K7N4G3|K7N4G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0254400 LjG1.1_chr5 56342482 56348407 +
2 domain predictions
2 GO terms
LotjaGi5g1v0254400.2
n.a. Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|K7N4G3|K7N4G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0254400 LjG1.1_chr5 56343744 56348407 +
2 domain predictions
2 GO terms
LotjaGi5g1v0271000.1
n.a. Ras family protein; TAIR: AT3G54840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1; TrEMBL-Plants: tr|Q40210|Q40210_LOTJA RAB5B; Found in the gene: LotjaGi5g1v0271000 LjG1.1_chr5 58430959 58436536 -
2 domain predictions
2 GO terms
LotjaGi5g1v0285200.1
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|I3STK0|I3STK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0285200 LjG1.1_chr5 60154740 60159650 +
2 domain predictions
2 GO terms
LotjaGi5g1v0285200.2
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|I3STK0|I3STK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0285200 LjG1.1_chr5 60156042 60157217 +
2 domain predictions
2 GO terms
LotjaGi5g1v0285200.3
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|I3STK0|I3STK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0285200 LjG1.1_chr5 60156116 60157427 +
2 domain predictions
2 GO terms
LotjaGi5g1v0285200.4
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|I3STK0|I3STK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0285200 LjG1.1_chr5 60156116 60157463 +
2 domain predictions
2 GO terms
LotjaGi5g1v0356000.1
n.a. Ras-related protein-like protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40215|Q40215_LOTJA RAB8A; Found in the gene: LotjaGi5g1v0356000 LjG1.1_chr5 67111074 67115491 +
2 domain predictions
2 GO terms
LotjaGi5g1v0356000.2
n.a. Ras-related protein Rab-8A; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40215|Q40215_LOTJA RAB8A; Found in the gene: LotjaGi5g1v0356000 LjG1.1_chr5 67111328 67114469 +
2 domain predictions
2 GO terms
LotjaGi5g1v0356000.3
n.a. Ras-related protein Rab-8A; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I1LK55|I1LK55_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0356000 LjG1.1_chr5 67111388 67114438 +
2 domain predictions
2 GO terms
LotjaGi5g1v0356000.4
n.a. Ras-related protein Rab-8A; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40215|Q40215_LOTJA RAB8A; Found in the gene: LotjaGi5g1v0356000 LjG1.1_chr5 67111388 67114457 +
2 domain predictions
2 GO terms
LotjaGi6g1v0050800.1
n.a. Ras family protein; TAIR: AT5G45130.1 Ras small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|Q40209|Q40209_LOTJA RAB5A; Found in the gene: LotjaGi6g1v0050800 LjG1.1_chr6 9115157 9120677 +
2 domain predictions
2 GO terms
LotjaGi6g1v0050800.2
n.a. Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|Q40209|Q40209_LOTJA RAB5A; Found in the gene: LotjaGi6g1v0050800 LjG1.1_chr6 9115511 9119817 +
2 domain predictions
2 GO terms
LotjaGi6g1v0065900.1
n.a. Ras-related protein, expressed; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I3SMI4|I3SMI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0065900 LjG1.1_chr6 12527683 12530201 +
2 domain predictions
2 GO terms
LotjaGi6g1v0065900.2
n.a. Ras-related protein, expressed; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I3SMI4|I3SMI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0065900 LjG1.1_chr6 12527970 12529881 +
2 domain predictions
2 GO terms
LotjaGi6g1v0280400.1
n.a. Ras-related protein; TAIR: AT4G17170.1 RAB GTPase homolog B1C; Swiss-Prot: sp|P92963|RAB1C_ARATH Ras-related protein RABB1c; TrEMBL-Plants: tr|A0A0B2Q350|A0A0B2Q350_GLYSO Ras-related protein RABB1c; Found in the gene: LotjaGi6g1v0280400 LjG1.1_chr6 59691131 59695426 -
2 domain predictions
2 GO terms
LotjaGi6g1v0280400.2
n.a. Ras-related protein; TAIR: AT4G17170.1 RAB GTPase homolog B1C; Swiss-Prot: sp|P92963|RAB1C_ARATH Ras-related protein RABB1c; TrEMBL-Plants: tr|A0A0B2Q350|A0A0B2Q350_GLYSO Ras-related protein RABB1c; Found in the gene: LotjaGi6g1v0280400 LjG1.1_chr6 59692027 59694934 -
2 domain predictions
2 GO terms
LotjaGi6g1v0365400.1
n.a. Ras-like protein; TAIR: AT3G11730.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1; TrEMBL-Plants: tr|Q40201|Q40201_LOTJA RAB1A; Found in the gene: LotjaGi6g1v0365400 LjG1.1_chr6 67773080 67785296 -
2 domain predictions
2 GO terms
LotjaGi6g1v0365400.2
n.a. Ras-like protein; TAIR: AT3G11730.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1; TrEMBL-Plants: tr|Q40201|Q40201_LOTJA RAB1A; Found in the gene: LotjaGi6g1v0365400 LjG1.1_chr6 67773753 67785293 -
2 domain predictions
2 GO terms
LotjaGi6g1v0365500.1
n.a. Ras-related protein, expressed; TAIR: AT1G09630.1 RAB GTPase 11C; Swiss-Prot: sp|O04486|RAA2A_ARATH Ras-related protein RABA2a; TrEMBL-Plants: tr|I3S907|I3S907_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0365500 LjG1.1_chr6 67773080 67785296 +
2 domain predictions
2 GO terms
LotjaGi6g1v0365500.2
n.a. Ras-related protein, expressed; TAIR: AT1G09630.1 RAB GTPase 11C; Swiss-Prot: sp|O04486|RAA2A_ARATH Ras-related protein RABA2a; TrEMBL-Plants: tr|I3S907|I3S907_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0365500 LjG1.1_chr6 67773149 67781581 +
2 domain predictions
2 GO terms