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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002048
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 472 results. Now displaying 2 of 10 with 50 rows per page. This search has taken 5.927s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2560490.1
n.a. PREDICTED: calcium-binding protein CML42-like [Glycine max] gi|356530149|ref|XP_003533646.1| chr1 29453008 29455781 -
5 domain predictions
1 GO term
Lj1g3v2560500.1
n.a. Calcium binding protein [Medicago truncatula] gi|357506755|ref|XP_003623666.1| chr1 29453263 29455781 -
6 domain predictions
1 GO term
Lj1g3v2862520.1
n.a. PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max] gi|356566963|ref|XP_003551694.1| chr1 32443658 32451358 -
2 domain predictions
1 GO term
Lj1g3v2862520.2
n.a. PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max] gi|356530007|ref|XP_003533577.1| chr1 32446326 32451358 -
2 domain predictions
1 GO term
Lj1g3v2976020.1
n.a. PREDICTED: probable calcium-binding protein CML45-like [Glycine max] gi|356531760|ref|XP_003534444.1| chr1 33765138 33765829 +
4 domain predictions
1 GO term
Lj1g3v3019860.1
n.a. PREDICTED: probable calcium-binding protein CML45-like [Glycine max] gi|356531760|ref|XP_003534444.1| chr1 34233920 34235166 +
5 domain predictions
1 GO term
Lj1g3v3221300.1
n.a. Calcium-binding EF-hand family protein [Theobroma cacao] gi|508701502|gb|EOX93398.1| chr1 36605984 36606729 -
3 domain predictions
1 GO term
Lj1g3v3329980.1
n.a. PREDICTED: sorcin-like isoform 1 [Glycine max] gi|356510600|ref|XP_003524025.1| chr1 37904231 37907914 -
4 domain predictions
1 GO term
Lj1g3v3343950.1
n.a. SnRK2 calcium sensor [Medicago truncatula] gi|357467475|ref|XP_003604022.1| chr1 38348149 38352166 -
4 domain predictions
1 GO term
Lj1g3v3384740.1
n.a. PREDICTED: epidermal growth factor receptor substrate 15-like isoform X1 [Cicer arietinum] gi|502131051|ref|XP_004500858.1| chr1 38988326 39003208 +
4 domain predictions
1 GO term
Lj1g3v3458500.1
n.a. Calcium-binding EF-hand family protein [Theobroma cacao] gi|508701502|gb|EOX93398.1| chr1 40068033 40068886 -
3 domain predictions
1 GO term
Lj1g3v3458730.1
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357505521|ref|XP_003623049.1| chr1 40132149 40149370 -
4 domain predictions
1 GO term
Lj1g3v3458730.2
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357505521|ref|XP_003623049.1| chr1 40132149 40150154 -
3 domain predictions
1 GO term
Lj1g3v3458730.3
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357505521|ref|XP_003623049.1| chr1 40132149 40149370 -
3 domain predictions
1 GO term
Lj1g3v3608350.2
n.a. PREDICTED: probable calcium-binding protein CML22-like [Glycine max] gi|356524445|ref|XP_003530839.1| chr1 41538245 41540409 +
5 domain predictions
1 GO term
Lj1g3v3834240.1
n.a. Calcium-binding protein CML38 [Medicago truncatula] gi|357497069|ref|XP_003618823.1| chr1 43648125 43648963 +
6 domain predictions
1 GO term
Lj1g3v3918150.1
n.a. PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like [Glycine max] gi|356571647|ref|XP_003553987.1| chr1 45770824 45774135 +
6 domain predictions
1 GO term
Lj1g3v4047180.1
n.a. PREDICTED: calmodulin-related protein isoform 4 [Vitis vinifera] gi|359479174|ref|XP_003632230.1| chr1 47731964 47733593 -
5 domain predictions
1 GO term
Lj1g3v4203440.1
n.a. n.a. chr1 49669767 49670059 -
4 domain predictions
1 GO term
Lj1g3v4263370.1
n.a. PREDICTED: calcium-dependent protein kinase 32-like isoform X1 [Cicer arietinum] gi|502108881|ref|XP_004493510.1| chr1 50262453 50266964 +
6 domain predictions
1 GO term
Lj1g3v4263370.2
n.a. PREDICTED: calcium-dependent protein kinase 32-like isoform X1 [Cicer arietinum] gi|502108881|ref|XP_004493510.1| chr1 50265279 50266964 +
6 domain predictions
1 GO term
Lj1g3v4467770.1
n.a. PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-2-like [Glycine max] gi|356511222|ref|XP_003524327.1| chr1 52342278 52346079 +
6 domain predictions
1 GO term
Lj1g3v4752970.1
n.a. PREDICTED: calcium-dependent protein kinase 2-like [Glycine max] gi|356503866|ref|XP_003520722.1| chr1 56901933 56904900 +
6 domain predictions
1 GO term
Lj1g3v4959930.1
n.a. Calcium-binding EF hand family protein [Theobroma cacao] gi|508719182|gb|EOY11079.1| chr1 60551962 60555662 +
2 domain predictions
1 GO term
Lj1g3v5060350.1
n.a. PREDICTED: CDPK-related kinase 3-like [Cicer arietinum] gi|502114076|ref|XP_004494853.1| chr1 61753811 61782884 -
2 domain predictions
1 GO term
Lj2g3v0025910.1
n.a. PREDICTED: calcium-dependent protein kinase 10-like [Glycine max] gi|356507178|ref|XP_003522347.1| chr2 534384 534945 -
5 domain predictions
1 GO term
Lj2g3v0025920.1
n.a. PREDICTED: calcium-dependent protein kinase 10-like [Glycine max] gi|356507178|ref|XP_003522347.1| chr2 534940 538670 -
5 domain predictions
1 GO term
Lj2g3v1277600.1
n.a. Cell division cycle and apoptosis regulator protein [Medicago truncatula] gi|357487171|ref|XP_003613873.1| chr2 20369131 20377672 +
2 domain predictions
1 GO term
Lj2g3v1862460.1
n.a. Calcium-binding protein CML24 [Medicago truncatula] gi|357482945|ref|XP_003611759.1| chr2 27863899 27864578 -
5 domain predictions
1 GO term
Lj2g3v1863500.1
n.a. PREDICTED: probable calcium-binding protein CML20-like [Glycine max] gi|356554718|ref|XP_003545690.1| chr2 27873158 27875856 -
5 domain predictions
1 GO term
Lj2g3v1988900.1
n.a. PREDICTED: calcineurin B-like protein 1-like isoform X1 [Cicer arietinum] gi|502160439|ref|XP_004511745.1| chr2 29626133 29630430 -
5 domain predictions
1 GO term
Lj2g3v2002550.2
n.a. PREDICTED: probable calcium-binding protein CML13-like [Cicer arietinum] gi|502160156|ref|XP_004511652.1| chr2 30353328 30360028 -
5 domain predictions
1 GO term
Lj2g3v2082320.1
n.a. PREDICTED: respiratory burst oxidase homolog protein F-like isoform 1 [Glycine max] gi|356497271|ref|XP_003517484.1| chr2 31176114 31184640 +
3 domain predictions
1 GO term
Lj2g3v2083370.1
n.a. PREDICTED: calcium-dependent protein kinase 3-like isoform 1 [Glycine max] gi|356539541|ref|XP_003538256.1| chr2 31202331 31205880 -
5 domain predictions
1 GO term
Lj2g3v2571120.1
n.a. PREDICTED: calcium-binding protein CML24-like [Cicer arietinum] gi|502096675|ref|XP_004490807.1| chr2 35334411 35335626 +
5 domain predictions
1 GO term
Lj2g3v2878330.1
n.a. PREDICTED: EH domain-containing protein 3-like [Cicer arietinum] gi|502099243|ref|XP_004491428.1| chr2 37453196 37454214 -
2 domain predictions
1 GO term
Lj2g3v2878370.1
n.a. PREDICTED: EH domain-containing protein 1-like [Glycine max] gi|356522037|ref|XP_003529656.1| chr2 37462998 37467604 -
2 domain predictions
1 GO term
Lj2g3v3164080.1
n.a. PREDICTED: calcium-dependent protein kinase 33-like isoform 1 [Glycine max] gi|356501529|ref|XP_003519577.1| chr2 40807744 40812666 +
5 domain predictions
1 GO term
Lj2g3v3209600.1
n.a. PREDICTED: EH domain-containing protein 3-like [Cicer arietinum] gi|502099243|ref|XP_004491428.1| chr2 41068590 41071287 -
2 domain predictions
1 GO term
Lj2g3v3209600.2
n.a. PREDICTED: EH domain-containing protein 3-like [Cicer arietinum] gi|502099243|ref|XP_004491428.1| chr2 41069285 41071287 -
2 domain predictions
1 GO term
Lj2g3v3318760.1
n.a. Calcineurin B-like protein [Medicago truncatula] gi|357495167|ref|XP_003617872.1| chr2 41912101 41917251 +
6 domain predictions
1 GO term
Lj2g3v3318760.2
n.a. Calcineurin B-like protein [Medicago truncatula] gi|357495167|ref|XP_003617872.1| chr2 41915212 41917251 +
3 domain predictions
1 GO term
Lj2g3v3403230.1
n.a. Epidermal growth factor receptor substrate 15-like protein [Medicago truncatula] gi|357495659|ref|XP_003618118.1| chr2 43105232 43114067 +
2 domain predictions
1 GO term
Lj2g3v3413280.1
n.a. PREDICTED: calcium-dependent protein kinase 4-like [Glycine max] gi|356551652|ref|XP_003544188.1| chr2 43135021 43141291 +
5 domain predictions
1 GO term
Lj3g3v0044110.1
n.a. PREDICTED: calcineurin subunit B-like isoform X1 [Cicer arietinum] gi|502080683|ref|XP_004486642.1| chr3 520190 524095 -
4 domain predictions
1 GO term
Lj3g3v0381710.1
n.a. calcium-binding protein [Lotus japonicus] gi|28301674|emb|CAB63264.3| chr3 3081665 3082797 +
5 domain predictions
1 GO term
Lj3g3v0381720.1
n.a. calcium-binding protein [Lotus japonicus] gi|28301674|emb|CAB63264.3| chr3 3081740 3082818 +
5 domain predictions
1 GO term
Lj3g3v0642540.1
n.a. Calcium-binding EF hand family protein [Theobroma cacao] gi|508718438|gb|EOY10335.1| chr3 6944468 6948607 +
2 domain predictions
1 GO term
Lj3g3v0683910.1
n.a. PREDICTED: calcium-binding protein PBP1-like [Cicer arietinum] gi|502084187|ref|XP_004487642.1| chr3 7541921 7543865 -
2 domain predictions
1 GO term
Lj3g3v0697020.1
n.a. Centrin-2 [Medicago truncatula] gi|357452511|ref|XP_003596532.1| chr3 7600524 7601358 +
3 domain predictions
1 GO term