Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003593
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 1047 results. Now displaying 7 of 21 with 50 rows per page. This search has taken 6.068s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v0540170.1
n.a. Pleiotropic drug resistance protein 4 [Triticum urartu] gi|474420790|gb|EMS67534.1| chr5 6509476 6513575 +
2 domain predictions
 –
Lj5g3v0657050.1
n.a. PREDICTED: cell division control protein 48 homolog E-like [Fragaria vesca subsp]. vesca] gi|470112480|ref|XP_004292462.1| chr5 9030042 9030501 +
2 domain predictions
 –
Lj5g3v0657090.1
n.a. PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356572464|ref|XP_003554388.1| chr5 9030839 9031774 +
2 domain predictions
 –
Lj5g3v0659620.1
n.a. PREDICTED: ABC transporter G family member 28-like [Glycine max] gi|356546010|ref|XP_003541425.1| chr5 9229883 9239433 +
2 domain predictions
 –
Lj5g3v1117160.1
n.a. PREDICTED: ABC transporter I family member 19-like [Cicer arietinum] gi|502114917|ref|XP_004495081.1| chr5 17698041 17703023 +
2 domain predictions
 –
Lj5g3v1358170.1
n.a. Cell division protease ftsH-like protein [Medicago truncatula] gi|357441419|ref|XP_003590987.1| chr5 20725674 20743349 +
2 domain predictions
 –
Lj5g3v1358170.3
n.a. Cell division protease ftsH-like protein [Medicago truncatula] gi|357441419|ref|XP_003590987.1| chr5 20730067 20743349 +
2 domain predictions
 –
Lj5g3v1530110.1
n.a. PREDICTED: ABC transporter I family member 20-like [Glycine max] gi|356535000|ref|XP_003536037.1| chr5 22297975 22300914 +
2 domain predictions
 –
Lj5g3v1575200.1
n.a. RNA helicase family protein isoform 8 [Theobroma cacao] gi|508703443|gb|EOX95339.1| chr5 22874340 22879898 -
3 domain predictions
 –
Lj5g3v1575200.2
n.a. ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357442187|ref|XP_003591371.1| chr5 22874340 22879898 -
3 domain predictions
 –
Lj5g3v1630010.1
n.a. PREDICTED: ABC transporter C family member 4-like [Glycine max] gi|356536723|ref|XP_003536885.1| chr5 23613083 23633570 -
2 domain predictions
 –
Lj5g3v1630010.2
n.a. PREDICTED: ABC transporter C family member 4-like [Glycine max] gi|356536723|ref|XP_003536885.1| chr5 23621897 23634241 -
2 domain predictions
 –
Lj5g3v1641080.1
n.a. Katanin p60 ATPase-containing subunit [Medicago truncatula] gi|357442551|ref|XP_003591553.1| chr5 23681436 23686770 -
2 domain predictions
 –
Lj5g3v1772520.1
n.a. PREDICTED: pleiotropic drug resistance protein 2-like [Cicer arietinum] gi|502118284|ref|XP_004496191.1| chr5 25198260 25209213 -
2 domain predictions
 –
Lj5g3v1793330.1
n.a. PREDICTED: ABC transporter G family member 21-like [Cicer arietinum] gi|502118333|ref|XP_004496215.1| chr5 25461117 25466737 +
2 domain predictions
 –
Lj5g3v1808060.1
n.a. PREDICTED: ABC transporter G family member 24-like [Glycine max] gi|356533953|ref|XP_003535522.1| chr5 25782915 25793417 +
2 domain predictions
 –
Lj5g3v1808060.2
n.a. PREDICTED: ABC transporter G family member 24-like [Glycine max] gi|356574615|ref|XP_003555441.1| chr5 25782915 25793417 +
2 domain predictions
 –
Lj5g3v1866730.1
n.a. PREDICTED: ABC transporter G family member 25-like [Cicer arietinum] gi|502118708|ref|XP_004496375.1| chr5 26638587 26639773 +
2 domain predictions
 –
Lj5g3v1866740.1
n.a. n.a. chr5 26638587 26645729 -
2 domain predictions
 –
Lj5g3v1961200.1
n.a. PREDICTED: ABC transporter C family member 10-like [Cicer arietinum] gi|502119079|ref|XP_004496497.1| chr5 27749874 27755035 +
2 domain predictions
 –
Lj5g3v2169420.1
n.a. PREDICTED: ATP synthase subunit beta, mitochondrial-like [Glycine max] gi|356575611|ref|XP_003555932.1| chr5 31081266 31085432 -
2 domain predictions
 –
Lj5g3v2182120.1
n.a. PREDICTED: ABC transporter B family member 2-like [Glycine max] gi|356497653|ref|XP_003517674.1| chr5 31519530 31526360 -
2 domain predictions
 –
Lj5g3v2218230.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi|508726930|gb|EOY18827.1| chr5 31950536 31954899 +
3 domain predictions
 –
Lj5g3v2288460.1
n.a. PREDICTED: ABC transporter B family member 20-like [Cicer arietinum] gi|502121408|ref|XP_004497307.1| chr5 33198101 33207415 -
2 domain predictions
 –
Lj5g3v2288960.1
n.a. PREDICTED: ABC transporter G family member 1-like [Glycine max] gi|356576859|ref|XP_003556547.1| chr5 33439239 33442362 +
2 domain predictions
 –
Lj5g3v2300310.1
n.a. PREDICTED: probable mitochondrial chaperone BCS1-B-like [Glycine max] gi|356538238|ref|XP_003537611.1| chr5 34000150 34006798 -
2 domain predictions
 –
Lj6g3v0521710.1
n.a. PREDICTED: ABC transporter F family member 4-like isoform X1 [Cicer arietinum] gi|502102241|ref|XP_004492011.1| chr6 5132347 5134863 -
2 domain predictions
 –
Lj6g3v0635320.1
n.a. RuvB DNA helicase-like protein [Medicago truncatula] gi|357460397|ref|XP_003600480.1| chr6 6260529 6285475 +
2 domain predictions
 –
Lj6g3v0781000.1
n.a. PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356524338|ref|XP_003530786.1| chr6 7773462 7778337 +
2 domain predictions
 –
Lj6g3v0781000.2
n.a. Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|358343988|ref|XP_003636077.1| chr6 7775504 7777125 +
2 domain predictions
 –
Lj6g3v0781010.1
n.a. PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356567072|ref|XP_003551747.1| chr6 7778438 7781002 +
2 domain predictions
 –
Lj6g3v0963660.1
n.a. PREDICTED: ABC transporter G family member 23-like [Glycine max] gi|356577612|ref|XP_003556918.1| chr6 10858495 10860660 +
2 domain predictions
 –
Lj6g3v1038830.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356497765|ref|XP_003517729.1| chr6 11632358 11644294 -
2 domain predictions
 –
Lj6g3v1077660.1
n.a. PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max] gi|356517002|ref|XP_003527179.1| chr6 12587209 12590890 +
2 domain predictions
 –
Lj6g3v1239560.1
n.a. RecA [Medicago truncatula] gi|357449857|ref|XP_003595205.1| chr6 15321183 15326898 +
2 domain predictions
 –
Lj6g3v1382270.1
n.a. ATP-dependent zinc metalloprotease FTSH 8, chloroplastic-like [Glycine max] gi|359806106|ref|NP_001241188.1| chr6 16470616 16481398 +
2 domain predictions
 –
Lj6g3v1447650.1
n.a. PREDICTED: ABC transporter C family member 4-like [Glycine max] gi|356529566|ref|XP_003533361.1| chr6 17057009 17066438 +
2 domain predictions
 –
Lj6g3v1527000.1
n.a. PREDICTED: mitochondrial chaperone BCS1-like [Glycine max] gi|356496707|ref|XP_003517207.1| chr6 17625323 17626789 +
2 domain predictions
 –
Lj6g3v1791970.1
n.a. PREDICTED: katanin p60 ATPase-containing subunit A1-like [Cicer arietinum] gi|502079223|ref|XP_004486193.1| chr6 20103993 20114109 +
2 domain predictions
 –
Lj6g3v1791970.2
n.a. PREDICTED: katanin p60 ATPase-containing subunit A1-like [Cicer arietinum] gi|502079223|ref|XP_004486193.1| chr6 20103993 20114109 +
2 domain predictions
 –
Lj6g3v1946430.1
n.a. PREDICTED: ABC transporter C family member 2-like isoform X1 [Cicer arietinum] gi|502078587|ref|XP_004485994.1| chr6 22235374 22249821 +
2 domain predictions
 –
Lj6g3v1966330.1
n.a. PREDICTED: ABC transporter B family member 9-like [Cicer arietinum] gi|502078526|ref|XP_004485974.1| chr6 22498216 22502018 -
2 domain predictions
 –
Lj6g3v2006110.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Cicer arietinum] gi|502078184|ref|XP_004485864.1| chr6 23370198 23378924 -
2 domain predictions
 –
Lj6g3v2204750.1
n.a. PREDICTED: DNA helicase MCM9-like [Cicer arietinum] gi|502079392|ref|XP_004486246.1| chr6 25495822 25513128 -
2 domain predictions
 –
Ljchlorog3v0000060.1
n.a. ATP synthase CF1 beta subunit [Lotus japonicus] gi|13518421|ref|NP_084781.1| chloro 7413 9107 +
2 domain predictions
 –
LotjaGi1g1v0004000.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757210 759149 +
2 domain predictions
 –
LotjaGi1g1v0004000.2
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|G7KFD2|G7KFD2_MEDTR AAA family ATPase; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757213 758934 +
2 domain predictions
 –
LotjaGi1g1v0014200.1
n.a. ABC transporter G family member; TAIR: AT3G13220.1 ABC-2 type transporter family protein; Swiss-Prot: sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26; TrEMBL-Plants: tr|I1M6E5|I1M6E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0014200 LjG1.1_chr1 1821987 1826259 -
2 domain predictions
 –
LotjaGi1g1v0016800.1
n.a. RuvB-like helicase; TAIR: AT5G22330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FMR9|RIN1_ARATH RuvB-like protein 1; TrEMBL-Plants: tr|K7KZ42|K7KZ42_SOYBN RuvB-like helicase; Found in the gene: LotjaGi1g1v0016800 LjG1.1_chr1 2137856 2143052 +
2 domain predictions
 –
LotjaGi1g1v0016800.2
n.a. RuvB-like helicase; TAIR: AT5G22330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FMR9|RIN1_ARATH RuvB-like protein 1; TrEMBL-Plants: tr|K7KZ42|K7KZ42_SOYBN RuvB-like helicase; Found in the gene: LotjaGi1g1v0016800 LjG1.1_chr1 2138063 2141632 +
2 domain predictions
 –