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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • IPR019786
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We have found 200 results. Now displaying 4 of 4 with 50 rows per page. This search has taken 5.832s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800 LjG1.1_chr3 58175295 58182527 +
n.a. Histone acetyltransferase; TAIR: AT1G16710.10 histone acetyltransferase of the CBP family 12; Swiss-Prot: sp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC12; TrEMBL-Plants: tr|I1KG14|I1KG14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0338000 LjG1.1_chr3 71042862 71056878 +
n.a. Histone acetyltransferase; TAIR: AT1G16710.10 histone acetyltransferase of the CBP family 12; Swiss-Prot: sp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC12; TrEMBL-Plants: tr|I1KG14|I1KG14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0338000 LjG1.1_chr3 71043049 71057558 +
n.a. Histone acetyltransferase; TAIR: AT1G16710.10 histone acetyltransferase of the CBP family 12; Swiss-Prot: sp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC12; TrEMBL-Plants: tr|I1KG14|I1KG14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0338000 LjG1.1_chr3 71043055 71056890 +
n.a. Histone acetyltransferase; TAIR: AT1G16710.4 histone acetyltransferase of the CBP family 12; Swiss-Prot: sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1; TrEMBL-Plants: tr|K7KYS1|K7KYS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0338000 LjG1.1_chr3 71043838 71056349 +
n.a. Histone acetyltransferase; TAIR: AT1G16710.10 histone acetyltransferase of the CBP family 12; Swiss-Prot: sp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC12; TrEMBL-Plants: tr|I1KG14|I1KG14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0338000 LjG1.1_chr3 71043838 71056349 +
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr|A0A151SIL1|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900 LjG1.1_chr3 79460910 79470626 -
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433668 82437856 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800 LjG1.1_chr3 82433900 82437269 +
n.a. Nucleosome-remodeling factor subunit BPTF; TAIR: AT5G22760.1 PHD finger family protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A1J7GFU1|A0A1J7GFU1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481400 LjG1.1_chr3 89906343 89917116 +
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT2G27980.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A0L9V6F0|A0A0L9V6F0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483700 LjG1.1_chr3 90113337 90119103 +
n.a. Nucleosome-remodeling factor subunit; TAIR: AT5G12400.1 PHD-finger and DNA binding domain-containing protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A0B2PNJ8|A0A0B2PNJ8_GLYSO Nucleosome-remodeling factor subunit NURF301; Found in the gene: LotjaGi3g1v0534700 LjG1.1_chr3 95147987 95168379 +
n.a. Nucleosome-remodeling factor subunit; TAIR: AT5G12400.1 PHD-finger and DNA binding domain-containing protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|K7LNU7|K7LNU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0534700 LjG1.1_chr3 95148152 95168025 +
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G08020.1 PHD finger family protein; Swiss-Prot: sp|Q9UMN6|KMT2B_HUMAN Histone-lysine N-methyltransferase 2B; TrEMBL-Plants: tr|A0A072UJ97|A0A072UJ97_MEDTR RING/FYVE/PHD zinc finger protein, putative; Found in the gene: LotjaGi3g1v0550400 LjG1.1_chr3 96726379 96733625 -
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G08020.1 PHD finger family protein; Swiss-Prot: sp|Q9UMN6|KMT2B_HUMAN Histone-lysine N-methyltransferase 2B; TrEMBL-Plants: tr|A0A072UJ97|A0A072UJ97_MEDTR RING/FYVE/PHD zinc finger protein, putative; Found in the gene: LotjaGi3g1v0550500 LjG1.1_chr3 96735608 96742967 -
n.a. PHD finger protein family; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420; TrEMBL-Plants: tr|A0A151TNX9|A0A151TNX9_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0555100 LjG1.1_chr3 97269032 97276861 -
n.a. PHD finger alfin-like protein; TAIR: AT2G02470.1 alfin-like 6; Swiss-Prot: sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1; TrEMBL-Plants: tr|K7L425|K7L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002700 LjG1.1_chr4 590705 594495 -
n.a. Chromodomain-helicase-DNA-binding family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|K7KPZ4|K7KPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0022000 LjG1.1_chr4 2675963 2693714 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45781405 45791244 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45781405 45791244 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45782265 45791225 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45782454 45791247 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC LjG1.1_chr4 45782552 45791120 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198800_LC LjG1.1_chr4 45817382 45826821 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT4G14920.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198800_LC LjG1.1_chr4 45820201 45824004 -
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 LjG1.1_chr4 64882147 64886907 -
n.a. Pathogenesis-related homeodomain protein; TAIR: AT4G29940.1 pathogenesis related homeodomain protein A; Swiss-Prot: sp|P48785|PRH_ARATH Pathogenesis-related homeodomain protein; TrEMBL-Plants: tr|A0A151SRV5|A0A151SRV5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0305500 LjG1.1_chr4 68116190 68121628 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700 LjG1.1_chr4 70577295 70582831 +
n.a. NF-X1-type zinc finger protein NFXL1; TAIR: AT1G10170.1 NF-X-like 1; Swiss-Prot: sp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL1; TrEMBL-Plants: tr|A0A1J7GX75|A0A1J7GX75_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0465300 LjG1.1_chr4 83550708 83555157 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927249 7934026 +
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927385 7933534 +
n.a. PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|D7TCI6|D7TCI6_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0047100 LjG1.1_chr5 7927385 7933534 +
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT2G37520.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|K7LZH4|K7LZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0068600 LjG1.1_chr5 11366165 11377364 +
n.a. PHD finger protein; TAIR: AT1G32810.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9ZUA9|Y2181_ARATH PHD finger protein At2g01810; TrEMBL-Plants: tr|K7LJY8|K7LJY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0200500 LjG1.1_chr5 49934731 49942934 -
n.a. Histone acetyltransferase; TAIR: AT1G79000.2 histone acetyltransferase of the CBP family 1; Swiss-Prot: sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1; TrEMBL-Plants: tr|G7J5R6|G7J5R6_MEDTR Histone acetylation protein; Found in the gene: LotjaGi5g1v0202100 LjG1.1_chr5 50210083 50231146 -
n.a. Histone acetyltransferase; TAIR: AT1G79000.1 histone acetyltransferase of the CBP family 1; Swiss-Prot: sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1; TrEMBL-Plants: tr|G7JBQ0|G7JBQ0_MEDTR Histone acetylation protein; Found in the gene: LotjaGi5g1v0202400_LC LjG1.1_chr5 50257191 50258946 -
n.a. DNA-binding protein; TAIR: AT1G09520.1 hypothetical protein; Swiss-Prot: sp|Q8SXT3|HFW2_DROME Protein singed wings 2; TrEMBL-Plants: tr|V7BJ40|V7BJ40_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0233500 LjG1.1_chr5 54080423 54082837 -
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1; TrEMBL-Plants: tr|A0A1J7I1P5|A0A1J7I1P5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0293700 LjG1.1_chr5 61110596 61115615 +
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1; TrEMBL-Plants: tr|A0A1J7I1P5|A0A1J7I1P5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0293700 LjG1.1_chr5 61110597 61114396 +
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A1J7FWH1|A0A1J7FWH1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307200 LjG1.1_chr5 62498444 62501382 +
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A072VQ30|A0A072VQ30_MEDTR RING/FYVE/PHD zinc finger protein, putative; Found in the gene: LotjaGi5g1v0313800 LjG1.1_chr5 63209149 63218553 -
n.a. Homeobox protein; TAIR: AT3G19510.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|Q8H991|HAZ1_ORYSJ Homeobox protein HAZ1; TrEMBL-Plants: tr|A0A1J7G9R1|A0A1J7G9R1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0325600 LjG1.1_chr5 64323847 64332777 +
n.a. Homeobox protein; TAIR: AT3G19510.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein; Swiss-Prot: sp|Q8H991|HAZ1_ORYSJ Homeobox protein HAZ1; TrEMBL-Plants: tr|A0A1J7G9R1|A0A1J7G9R1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0325600 LjG1.1_chr5 64323851 64331952 +
n.a. PHD finger protein ING; TAIR: AT3G24010.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9LIQ6|ING1_ARATH PHD finger protein ING1; TrEMBL-Plants: tr|I3RZ83|I3RZ83_LOTJA PHD finger protein ING; Found in the gene: LotjaGi6g1v0011800 LjG1.1_chr6 2270618 2274467 -
n.a. RING finger family protein; TAIR: AT2G04240.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SI09|XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO; TrEMBL-Plants: tr|I3S4J2|I3S4J2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0025900 LjG1.1_chr6 4653088 4655589 -
n.a. RING finger family protein; TAIR: AT2G04240.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SI09|XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO; TrEMBL-Plants: tr|I3S4J2|I3S4J2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0025900 LjG1.1_chr6 4653445 4655364 -
n.a. NF-X1-type zinc finger protein NFXL2; TAIR: AT5G05660.1 NF-X1-type zinc finger protein NFXL2; Swiss-Prot: sp|Q9FFK8|NFXL2_ARATH NF-X1-type zinc finger protein NFXL2; TrEMBL-Plants: tr|G7JBA9|G7JBA9_MEDTR NF-X1-type zinc finger protein NFXL2; Found in the gene: LotjaGi6g1v0075600 LjG1.1_chr6 14294699 14304983 +
n.a. NF-X1-type zinc finger protein NFXL2; TAIR: AT5G05660.1 NF-X1-type zinc finger protein NFXL2; Swiss-Prot: sp|Q9FFK8|NFXL2_ARATH NF-X1-type zinc finger protein NFXL2; TrEMBL-Plants: tr|G7JBA9|G7JBA9_MEDTR NF-X1-type zinc finger protein NFXL2; Found in the gene: LotjaGi6g1v0075600 LjG1.1_chr6 14294913 14304576 +
n.a. PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|A0A1J7I2R7|A0A1J7I2R7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227400 LjG1.1_chr6 53362690 53366855 +
n.a. Pathogenesis-related homeodomain protein; TAIR: AT4G29940.1 pathogenesis related homeodomain protein A; Swiss-Prot: sp|P48785|PRH_ARATH Pathogenesis-related homeodomain protein; TrEMBL-Plants: tr|K7MBU2|K7MBU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0235500 LjG1.1_chr6 54532357 54544956 -