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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027417
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4269 results. Now displaying 9 of 86 with 50 rows per page. This search has taken 5.945s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0281509.2
n.a. disease resistance protein [Glycine max] gi|351720930|ref|NP_001235657.1| chr0 145932835 145936508 +
3 domain predictions
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Lj0g3v0281719.1
n.a. PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2-like [Cicer arietinum] gi|502169493|ref|XP_004514619.1| chr0 146070020 146082320 -
3 domain predictions
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Lj0g3v0281729.1
n.a. PREDICTED: CTP synthase 1-like [Cicer arietinum] gi|502154191|ref|XP_004509615.1| chr0 146084319 146088177 -
3 domain predictions
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Lj0g3v0282239.1
n.a. Helicase protein with RING/U-box domain [Theobroma cacao] gi|508714076|gb|EOY05973.1| chr0 146329668 146335635 +
3 domain predictions
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Lj0g3v0282469.1
n.a. NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|357515077|ref|XP_003627827.1| chr0 146440998 146447078 +
3 domain predictions
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Lj0g3v0283799.1
n.a. PREDICTED: LOW QUALITY PROTEIN: midasin-like [Cicer arietinum] gi|502156332|ref|XP_004510421.1| chr0 147141284 147166777 +
3 domain predictions
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Lj0g3v0283809.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502156468|ref|XP_004510489.1| chr0 147176581 147182959 -
3 domain predictions
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Lj0g3v0283809.3
n.a. NBS resistance protein [Medicago truncatula] gi|357513713|ref|XP_003627145.1| chr0 147176581 147181145 -
2 domain predictions
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Lj0g3v0283869.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr0 147209316 147210128 +
3 domain predictions
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Lj0g3v0284349.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 147534387 147536814 +
3 domain predictions
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Lj0g3v0285989.1
n.a. ABC transporter B family member [Medicago truncatula] gi|357463203|ref|XP_003601883.1| chr0 148513399 148520767 +
3 domain predictions
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Lj0g3v0286759.1
n.a. PREDICTED: ADP-ribosylation factor-like protein 8B-like [Cicer arietinum] gi|502096772|ref|XP_004490821.1| chr0 148988615 148991154 -
3 domain predictions
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Lj0g3v0286999.1
n.a. RAB7A [Lotus japonicus] gi|1370182|emb|CAA98168.1| chr0 149175672 149182737 +
3 domain predictions
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Lj0g3v0287009.1
n.a. RAB7A [Lotus japonicus] gi|1370182|emb|CAA98168.1| chr0 149175857 149182737 +
3 domain predictions
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Lj0g3v0289949.1
n.a. PREDICTED: DNA-binding protein SMUBP-2-like [Glycine max] gi|356570496|ref|XP_003553421.1| chr0 150537469 150542554 +
3 domain predictions
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Lj0g3v0289949.2
n.a. PREDICTED: DNA-binding protein SMUBP-2-like [Glycine max] gi|356570496|ref|XP_003553421.1| chr0 150541349 150548368 +
3 domain predictions
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Lj0g3v0290169.1
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357521758|ref|XP_003600237.1| chr0 150676133 150677102 +
3 domain predictions
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Lj0g3v0290189.1
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357460983|ref|XP_003600773.1| chr0 150682459 150684784 +
3 domain predictions
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Lj0g3v0291009.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like isoform X1 [Cicer arietinum] gi|502136340|ref|XP_004502651.1| chr0 151058645 151063584 +
3 domain predictions
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Lj0g3v0292829.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DDX11-like isoform X2 [Cicer arietinum] gi|502147607|ref|XP_004506847.1| chr0 151995303 151999991 +
3 domain predictions
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Lj0g3v0293239.1
n.a. Disease resistance-like protein [Medicago truncatula] gi|357486939|ref|XP_003613757.1| chr0 152237603 152239296 -
3 domain predictions
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Lj0g3v0293679.2
n.a. PREDICTED: ras-related protein RABE1c [Vitis vinifera] gi|225435058|ref|XP_002284365.1| chr0 152505620 152506802 +
3 domain predictions
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Lj0g3v0294259.1
n.a. n.a. chr0 152891486 152893698 +
3 domain predictions
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Lj0g3v0294269.1
n.a. Disease resistance-like protein GS0-1 [Medicago truncatula] gi|357494433|ref|XP_003617505.1| chr0 152891486 152894936 -
3 domain predictions
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Lj0g3v0294279.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 152895123 152897638 -
3 domain predictions
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Lj0g3v0294639.1
n.a. RAS-like protein [Cicer arietinum] gi|6469129|emb|CAB61746.1| chr0 153125310 153128378 +
3 domain predictions
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Lj0g3v0294889.1
n.a. PREDICTED: ADP-ribosylation factor-like [Solanum lycopersicum] gi|460391666|ref|XP_004241441.1| chr0 153285389 153286016 +
2 domain predictions
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Lj0g3v0295669.1
n.a. GTP-binding protein ras-like protein [Medicago truncatula] gi|357474509|ref|XP_003607539.1| chr0 153619275 153622041 +
3 domain predictions
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Lj0g3v0296779.1
n.a. PREDICTED: myosin-Va-like [Glycine max] gi|356530241|ref|XP_003533691.1| chr0 154153522 154155450 +
2 domain predictions
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Lj0g3v0297389.1
n.a. n.a. chr0 154572869 154582454 -
3 domain predictions
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Lj0g3v0297389.2
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr0 154572869 154582454 -
3 domain predictions
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Lj0g3v0297389.3
n.a. n.a. chr0 154572869 154582454 -
3 domain predictions
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Lj0g3v0297599.1
n.a. PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like [Glycine max] gi|356500419|ref|XP_003519029.1| chr0 154707796 154722146 +
3 domain predictions
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Lj0g3v0298949.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max] gi|356501519|ref|XP_003519572.1| chr0 155380623 155387217 +
3 domain predictions
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Lj0g3v0300949.1
n.a. PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356566246|ref|XP_003551345.1| chr0 156405919 156408814 -
3 domain predictions
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Lj0g3v0302489.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 157373359 157379450 -
3 domain predictions
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Lj0g3v0302489.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 157375434 157379450 -
3 domain predictions
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Lj0g3v0302529.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr0 157389483 157393887 -
3 domain predictions
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Lj0g3v0302529.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr0 157389735 157393887 -
3 domain predictions
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Lj0g3v0302619.1
n.a. PREDICTED: V-type proton ATPase subunit B 1-like isoform 1 [Glycine max] gi|356536392|ref|XP_003536722.1| chr0 157439415 157444810 +
3 domain predictions
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Lj0g3v0302619.2
n.a. PREDICTED: V-type proton ATPase subunit B 1-like [Glycine max] gi|356575458|ref|XP_003555858.1| chr0 157439415 157445409 +
3 domain predictions
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Lj0g3v0303619.1
n.a. RAB1C [Lotus japonicus] gi|1370166|emb|CAA98160.1| chr0 158114308 158117498 +
3 domain predictions
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Lj0g3v0303629.1
n.a. RAB1C [Lotus japonicus] gi|1370166|emb|CAA98160.1| chr0 158114342 158117771 +
3 domain predictions
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Lj0g3v0304369.1
n.a. PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356510881|ref|XP_003524162.1| chr0 158528746 158529891 -
3 domain predictions
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Lj0g3v0304749.1
n.a. PREDICTED: ABC transporter B family member 2-like [Glycine max] gi|356497653|ref|XP_003517674.1| chr0 158742776 158749005 +
3 domain predictions
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Lj0g3v0304759.1
n.a. PREDICTED: ABC transporter B family member 2-like [Glycine max] gi|356497653|ref|XP_003517674.1| chr0 158746892 158750007 +
3 domain predictions
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Lj0g3v0304769.1
n.a. Regulator of nonsense transcripts-like protein [Medicago truncatula] gi|358349482|ref|XP_003638765.1| chr0 158756801 158767278 -
3 domain predictions
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Lj0g3v0304769.2
n.a. Regulator of nonsense transcripts-like protein [Medicago truncatula] gi|358349482|ref|XP_003638765.1| chr0 158756801 158767678 -
3 domain predictions
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Lj0g3v0306049.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356499338|ref|XP_003518498.1| chr0 159614024 159621107 -
3 domain predictions
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Lj0g3v0306379.1
n.a. PREDICTED: ABC transporter C family member 5-like [Glycine max] gi|356545904|ref|XP_003541373.1| chr0 159858016 159866960 +
3 domain predictions
 –