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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • IPR029071
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We have found 320 results. Now displaying 6 of 7 with 50 rows per page. This search has taken 6.797s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. Polyubiquitin protein; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A; TrEMBL-Plants: tr|K7UBK6|K7UBK6_MAIZE Ubiquitin2; Found in the gene: LotjaGi4g1v0059800 LjG1.1_chr4 7171881 7184457 -
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi4g1v0059800 LjG1.1_chr4 7171881 7184635 -
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A; TrEMBL-Plants: tr|A0A072UMK2|A0A072UMK2_MEDTR Polyubiquitin 3; Found in the gene: LotjaGi4g1v0059800 LjG1.1_chr4 7171881 7184659 -
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0112500_LC LjG1.1_chr4 16084634 16086050 -
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0112500_LC LjG1.1_chr4 16085185 16106802 -
n.a. Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 LjG1.1_chr4 20058434 20066917 -
n.a. Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 LjG1.1_chr4 20059436 20065282 -
n.a. UBX domain-containing protein; TAIR: AT1G14570.1 UBX domain-containing protein; Swiss-Prot: sp|Q94JZ8|PUX7_ARATH Plant UBX domain-containing protein 7; TrEMBL-Plants: tr|I1MMM9|I1MMM9_SOYBN UBX domain-containing protein; Found in the gene: LotjaGi4g1v0151000 LjG1.1_chr4 24873422 24881805 +
n.a. E3 ubiquitin-protein ligase-like protein; TAIR: AT4G12570.1 ubiquitin protein ligase 5; Swiss-Prot: sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5; TrEMBL-Plants: tr|K7MJB8|K7MJB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0162300 LjG1.1_chr4 30036059 30040148 -
n.a. Ubiquitin family protein; TAIR: AT2G35360.1 ubiquitin family protein; Swiss-Prot: sp|Q9NPB0|SMDC1_HUMAN SAYSvFN domain-containing protein 1; TrEMBL-Plants: tr|I1MVD3|I1MVD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0189100 LjG1.1_chr4 43047349 43058417 -
n.a. Ubiquitin family protein; TAIR: AT2G35360.1 ubiquitin family protein; Swiss-Prot: sp|Q9NPB0|SMDC1_HUMAN SAYSvFN domain-containing protein 1; TrEMBL-Plants: tr|I1MVD3|I1MVD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0189100 LjG1.1_chr4 43047349 43058450 -
n.a. Autophagy-related protein; TAIR: AT4G16520.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f; TrEMBL-Plants: tr|I3T1H3|I3T1H3_LOTJA Autophagy-related protein; Found in the gene: LotjaGi4g1v0204700 LjG1.1_chr4 47549647 47553553 +
n.a. Autophagy-related protein; TAIR: AT4G16520.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f; TrEMBL-Plants: tr|I3T1H3|I3T1H3_LOTJA Autophagy-related protein; Found in the gene: LotjaGi4g1v0204700 LjG1.1_chr4 47550410 47553091 +
n.a. BAG family molecular chaperone regulator-like protein; TAIR: AT5G52060.1 BCL-2-associated athanogene 1; Swiss-Prot: sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1; TrEMBL-Plants: tr|A0A151SLE5|A0A151SLE5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0220000 LjG1.1_chr4 51801979 51804483 -
n.a. FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|A0A151TT74|A0A151TT74_CAJCA FAS-associated factor 2-B; Found in the gene: LotjaGi4g1v0231200 LjG1.1_chr4 54243216 54246067 +
n.a. Ubiquitin family protein; TAIR: AT5G25270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q6PA26|BAG6B_XENLA Large proline-rich protein bag6-B; TrEMBL-Plants: tr|D5LXJ0|D5LXJ0_LOTJA CIP73 protein; Found in the gene: LotjaGi4g1v0281900 LjG1.1_chr4 65296786 65307466 +
n.a. Ubiquitin family protein; TAIR: AT5G25270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q6PA26|BAG6B_XENLA Large proline-rich protein bag6-B; TrEMBL-Plants: tr|D5LXJ0|D5LXJ0_LOTJA CIP73 protein; Found in the gene: LotjaGi4g1v0281900 LjG1.1_chr4 65298258 65307365 +
n.a. Protein RTF2-like protein; TAIR: AT5G58020.1 RTF2 RING-finger protein; Swiss-Prot: sp|A5GFW7|RTF2_PIG Protein RTF2 homolog; TrEMBL-Plants: tr|I3SA36|I3SA36_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0286400 LjG1.1_chr4 65844202 65847894 -
n.a. Autophagy-related protein 11; TAIR: AT4G30790.1 autophagy-like protein; Swiss-Prot: sp|Q9SUG7|ATG11_ARATH Autophagy-related protein 11; TrEMBL-Plants: tr|I1JGS5|I1JGS5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0290300 LjG1.1_chr4 66261393 66268777 +
n.a. Autophagy-related protein 11; TAIR: AT4G30790.1 autophagy-like protein; Swiss-Prot: sp|Q9SUG7|ATG11_ARATH Autophagy-related protein 11; TrEMBL-Plants: tr|I1JGS5|I1JGS5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0290300 LjG1.1_chr4 66262426 66268363 +
n.a. Autophagy-related protein; TAIR: AT3G15580.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9LRP7|ATG8I_ARATH Autophagy-related protein 8i; TrEMBL-Plants: tr|G7JQ24|G7JQ24_MEDTR Autophagy-related protein; Found in the gene: LotjaGi4g1v0312500 LjG1.1_chr4 68938993 68941556 -
n.a. Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp|Q9FLP6|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr|K7L624|K7L624_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0373300 LjG1.1_chr4 75304615 75307514 -
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|I3TAN7|I3TAN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0383400 LjG1.1_chr4 76207923 76210794 +
n.a. Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0387500 LjG1.1_chr4 76609750 76613482 +
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT4G24990.1 Ubiquitin family protein; Swiss-Prot: sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3; TrEMBL-Plants: tr|I3SSW2|I3SSW2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0419300 LjG1.1_chr4 79479664 79485195 -
n.a. Phosphatidylinositol 4-kinase gamma 4; TAIR: AT2G46500.1 phosphoinositide 4-kinase gamma 4; Swiss-Prot: sp|Q9ZPY9|P4KG4_ARATH Phosphatidylinositol 4-kinase gamma 4; TrEMBL-Plants: tr|I1K689|I1K689_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436200 LjG1.1_chr4 80922069 80926097 -
n.a. ubiquitin 4; TAIR: AT2G46500.1 phosphoinositide 4-kinase gamma 4; Swiss-Prot: sp|Q9ZPY9|P4KG4_ARATH Phosphatidylinositol 4-kinase gamma 4; TrEMBL-Plants: tr|I1K689|I1K689_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436200 LjG1.1_chr4 80922545 80925549 -
n.a. UBX domain-containing protein; TAIR: AT2G01650.1 plant UBX domain-containing protein 2; Swiss-Prot: sp|Q9ZU93|PUX2_ARATH Plant UBX domain-containing protein 2; TrEMBL-Plants: tr|I1KQ73|I1KQ73_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455600 LjG1.1_chr4 82716182 82719816 -
n.a. Ubiquitin family protein; TAIR: AT5G42220.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9Z1R2|BAG6_MOUSE Large proline-rich protein BAG6; TrEMBL-Plants: tr|I1MBZ3|I1MBZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0001400 LjG1.1_chr5 260189 271034 +
n.a. Ubiquitin family protein; TAIR: AT5G42220.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9Z1R2|BAG6_MOUSE Large proline-rich protein BAG6; TrEMBL-Plants: tr|I1MBZ3|I1MBZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0001400 LjG1.1_chr5 260189 271034 +
n.a. U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TAIR: AT4G32270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|I3T5J9|I3T5J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0059700 LjG1.1_chr5 9989123 9995951 -
n.a. U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TAIR: AT4G32270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|I3T5J9|I3T5J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0059700 LjG1.1_chr5 9989390 9995823 -
n.a. Ubiquitin carboxyl-terminal hydrolase; TAIR: AT3G49600.1 ubiquitin-specific protease 26; Swiss-Prot: sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26; TrEMBL-Plants: tr|I1M9Q7|I1M9Q7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0064500 LjG1.1_chr5 10814296 10825566 +
n.a. Ubiquitin carboxyl-terminal hydrolase; TAIR: AT3G49600.1 ubiquitin-specific protease 26; Swiss-Prot: sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26; TrEMBL-Plants: tr|I1M9Q7|I1M9Q7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0064500 LjG1.1_chr5 10815208 10825105 +
n.a. Ubiquitin carboxyl-terminal hydrolase; TAIR: AT3G49600.1 ubiquitin-specific protease 26; Swiss-Prot: sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26; TrEMBL-Plants: tr|I1M9Q7|I1M9Q7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0064500 LjG1.1_chr5 10815208 10825105 +
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi5g1v0099000 LjG1.1_chr5 17798983 17801934 -
n.a. Tubulin folding cofactor B; TAIR: AT3G10220.1 tubulin folding cofactor B; Swiss-Prot: sp|Q67Z52|TBCB_ARATH Tubulin-folding cofactor B; TrEMBL-Plants: tr|I3SPY8|I3SPY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0133300 LjG1.1_chr5 31304467 31328262 +
n.a. FAS-associated factor 2-B-like protein; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 LjG1.1_chr5 49735104 49746530 +
n.a. FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 LjG1.1_chr5 49735424 49745816 +
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 LjG1.1_chr5 54671842 54676825 -
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 LjG1.1_chr5 54672241 54676829 -
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 LjG1.1_chr5 54673649 54676395 -
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 LjG1.1_chr5 54673828 54676398 -
n.a. Autophagy-related protein; TAIR: AT3G15580.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9LRP7|ATG8I_ARATH Autophagy-related protein 8i; TrEMBL-Plants: tr|I3RZ94|I3RZ94_LOTJA Autophagy-related protein; Found in the gene: LotjaGi5g1v0240300 LjG1.1_chr5 54856097 54858994 +
n.a. BAG family molecular chaperone regulator-like protein; TAIR: AT5G52060.1 BCL-2-associated athanogene 1; Swiss-Prot: sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1; TrEMBL-Plants: tr|A0A1J7GEV2|A0A1J7GEV2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304300 LjG1.1_chr5 62240344 62243577 +
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 LjG1.1_chr5 63553624 63556631 -
n.a. Polyubiquitin; TAIR: AT4G02890.1 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|D7M3C0|D7M3C0_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 LjG1.1_chr5 63553624 63556631 -
n.a. Polyubiquitin; TAIR: AT4G02890.1 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|D7M3C0|D7M3C0_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 LjG1.1_chr5 63553624 63556631 -
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 LjG1.1_chr5 63553848 63556553 -
n.a. Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A068UJB0|A0A068UJB0_COFCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 LjG1.1_chr5 63554707 63555852 -