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The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.
We have found 320 results. Now displaying 6 of 7 with 50 rows per page. This search has taken 6.797s to perform.
Transcript | Name | Description | Chr | Start | End | Strand | Domain predictions | GO predictions |
---|---|---|---|---|---|---|---|---|
n.a. | Polyubiquitin protein; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A; TrEMBL-Plants: tr|K7UBK6|K7UBK6_MAIZE Ubiquitin2; Found in the gene: LotjaGi4g1v0059800 | LjG1.1_chr4 | 7171881 | 7184457 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi4g1v0059800 | LjG1.1_chr4 | 7171881 | 7184635 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A; TrEMBL-Plants: tr|A0A072UMK2|A0A072UMK2_MEDTR Polyubiquitin 3; Found in the gene: LotjaGi4g1v0059800 | LjG1.1_chr4 | 7171881 | 7184659 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0112500_LC | LjG1.1_chr4 | 16084634 | 16086050 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0112500_LC | LjG1.1_chr4 | 16085185 | 16106802 | - | – | ||
n.a. | Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 | LjG1.1_chr4 | 20058434 | 20066917 | - | – | ||
n.a. | Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 | LjG1.1_chr4 | 20059436 | 20065282 | - | – | ||
n.a. | UBX domain-containing protein; TAIR: AT1G14570.1 UBX domain-containing protein; Swiss-Prot: sp|Q94JZ8|PUX7_ARATH Plant UBX domain-containing protein 7; TrEMBL-Plants: tr|I1MMM9|I1MMM9_SOYBN UBX domain-containing protein; Found in the gene: LotjaGi4g1v0151000 | LjG1.1_chr4 | 24873422 | 24881805 | + | – | ||
n.a. | E3 ubiquitin-protein ligase-like protein; TAIR: AT4G12570.1 ubiquitin protein ligase 5; Swiss-Prot: sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5; TrEMBL-Plants: tr|K7MJB8|K7MJB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0162300 | LjG1.1_chr4 | 30036059 | 30040148 | - | – | ||
n.a. | Ubiquitin family protein; TAIR: AT2G35360.1 ubiquitin family protein; Swiss-Prot: sp|Q9NPB0|SMDC1_HUMAN SAYSvFN domain-containing protein 1; TrEMBL-Plants: tr|I1MVD3|I1MVD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0189100 | LjG1.1_chr4 | 43047349 | 43058417 | - | – | ||
n.a. | Ubiquitin family protein; TAIR: AT2G35360.1 ubiquitin family protein; Swiss-Prot: sp|Q9NPB0|SMDC1_HUMAN SAYSvFN domain-containing protein 1; TrEMBL-Plants: tr|I1MVD3|I1MVD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0189100 | LjG1.1_chr4 | 43047349 | 43058450 | - | – | ||
n.a. | Autophagy-related protein; TAIR: AT4G16520.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f; TrEMBL-Plants: tr|I3T1H3|I3T1H3_LOTJA Autophagy-related protein; Found in the gene: LotjaGi4g1v0204700 | LjG1.1_chr4 | 47549647 | 47553553 | + | – | ||
n.a. | Autophagy-related protein; TAIR: AT4G16520.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f; TrEMBL-Plants: tr|I3T1H3|I3T1H3_LOTJA Autophagy-related protein; Found in the gene: LotjaGi4g1v0204700 | LjG1.1_chr4 | 47550410 | 47553091 | + | – | ||
n.a. | BAG family molecular chaperone regulator-like protein; TAIR: AT5G52060.1 BCL-2-associated athanogene 1; Swiss-Prot: sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1; TrEMBL-Plants: tr|A0A151SLE5|A0A151SLE5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0220000 | LjG1.1_chr4 | 51801979 | 51804483 | - | – | ||
n.a. | FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|A0A151TT74|A0A151TT74_CAJCA FAS-associated factor 2-B; Found in the gene: LotjaGi4g1v0231200 | LjG1.1_chr4 | 54243216 | 54246067 | + | – | ||
n.a. | Ubiquitin family protein; TAIR: AT5G25270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q6PA26|BAG6B_XENLA Large proline-rich protein bag6-B; TrEMBL-Plants: tr|D5LXJ0|D5LXJ0_LOTJA CIP73 protein; Found in the gene: LotjaGi4g1v0281900 | LjG1.1_chr4 | 65296786 | 65307466 | + | – | ||
n.a. | Ubiquitin family protein; TAIR: AT5G25270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q6PA26|BAG6B_XENLA Large proline-rich protein bag6-B; TrEMBL-Plants: tr|D5LXJ0|D5LXJ0_LOTJA CIP73 protein; Found in the gene: LotjaGi4g1v0281900 | LjG1.1_chr4 | 65298258 | 65307365 | + | – | ||
n.a. | Protein RTF2-like protein; TAIR: AT5G58020.1 RTF2 RING-finger protein; Swiss-Prot: sp|A5GFW7|RTF2_PIG Protein RTF2 homolog; TrEMBL-Plants: tr|I3SA36|I3SA36_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0286400 | LjG1.1_chr4 | 65844202 | 65847894 | - | – | ||
n.a. | Autophagy-related protein 11; TAIR: AT4G30790.1 autophagy-like protein; Swiss-Prot: sp|Q9SUG7|ATG11_ARATH Autophagy-related protein 11; TrEMBL-Plants: tr|I1JGS5|I1JGS5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0290300 | LjG1.1_chr4 | 66261393 | 66268777 | + | – | ||
n.a. | Autophagy-related protein 11; TAIR: AT4G30790.1 autophagy-like protein; Swiss-Prot: sp|Q9SUG7|ATG11_ARATH Autophagy-related protein 11; TrEMBL-Plants: tr|I1JGS5|I1JGS5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0290300 | LjG1.1_chr4 | 66262426 | 66268363 | + | – | ||
n.a. | Autophagy-related protein; TAIR: AT3G15580.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9LRP7|ATG8I_ARATH Autophagy-related protein 8i; TrEMBL-Plants: tr|G7JQ24|G7JQ24_MEDTR Autophagy-related protein; Found in the gene: LotjaGi4g1v0312500 | LjG1.1_chr4 | 68938993 | 68941556 | - | – | ||
n.a. | Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp|Q9FLP6|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr|K7L624|K7L624_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0373300 | LjG1.1_chr4 | 75304615 | 75307514 | - | – | ||
n.a. | Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|I3TAN7|I3TAN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0383400 | LjG1.1_chr4 | 76207923 | 76210794 | + | – | ||
n.a. | Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0387500 | LjG1.1_chr4 | 76609750 | 76613482 | + | – | ||
n.a. | Membrane-anchored ubiquitin-fold protein; TAIR: AT4G24990.1 Ubiquitin family protein; Swiss-Prot: sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3; TrEMBL-Plants: tr|I3SSW2|I3SSW2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0419300 | LjG1.1_chr4 | 79479664 | 79485195 | - | – | ||
n.a. | Phosphatidylinositol 4-kinase gamma 4; TAIR: AT2G46500.1 phosphoinositide 4-kinase gamma 4; Swiss-Prot: sp|Q9ZPY9|P4KG4_ARATH Phosphatidylinositol 4-kinase gamma 4; TrEMBL-Plants: tr|I1K689|I1K689_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436200 | LjG1.1_chr4 | 80922069 | 80926097 | - | – | ||
n.a. | ubiquitin 4; TAIR: AT2G46500.1 phosphoinositide 4-kinase gamma 4; Swiss-Prot: sp|Q9ZPY9|P4KG4_ARATH Phosphatidylinositol 4-kinase gamma 4; TrEMBL-Plants: tr|I1K689|I1K689_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436200 | LjG1.1_chr4 | 80922545 | 80925549 | - | – | ||
n.a. | UBX domain-containing protein; TAIR: AT2G01650.1 plant UBX domain-containing protein 2; Swiss-Prot: sp|Q9ZU93|PUX2_ARATH Plant UBX domain-containing protein 2; TrEMBL-Plants: tr|I1KQ73|I1KQ73_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455600 | LjG1.1_chr4 | 82716182 | 82719816 | - | – | ||
n.a. | Ubiquitin family protein; TAIR: AT5G42220.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9Z1R2|BAG6_MOUSE Large proline-rich protein BAG6; TrEMBL-Plants: tr|I1MBZ3|I1MBZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0001400 | LjG1.1_chr5 | 260189 | 271034 | + | – | ||
n.a. | Ubiquitin family protein; TAIR: AT5G42220.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9Z1R2|BAG6_MOUSE Large proline-rich protein BAG6; TrEMBL-Plants: tr|I1MBZ3|I1MBZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0001400 | LjG1.1_chr5 | 260189 | 271034 | + | – | ||
n.a. | U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TAIR: AT4G32270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|I3T5J9|I3T5J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0059700 | LjG1.1_chr5 | 9989123 | 9995951 | - | – | ||
n.a. | U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TAIR: AT4G32270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|I3T5J9|I3T5J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0059700 | LjG1.1_chr5 | 9989390 | 9995823 | - | – | ||
n.a. | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT3G49600.1 ubiquitin-specific protease 26; Swiss-Prot: sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26; TrEMBL-Plants: tr|I1M9Q7|I1M9Q7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0064500 | LjG1.1_chr5 | 10814296 | 10825566 | + | – | ||
n.a. | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT3G49600.1 ubiquitin-specific protease 26; Swiss-Prot: sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26; TrEMBL-Plants: tr|I1M9Q7|I1M9Q7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0064500 | LjG1.1_chr5 | 10815208 | 10825105 | + | – | ||
n.a. | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT3G49600.1 ubiquitin-specific protease 26; Swiss-Prot: sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26; TrEMBL-Plants: tr|I1M9Q7|I1M9Q7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0064500 | LjG1.1_chr5 | 10815208 | 10825105 | + | – | ||
n.a. | Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi5g1v0099000 | LjG1.1_chr5 | 17798983 | 17801934 | - | – | ||
n.a. | Tubulin folding cofactor B; TAIR: AT3G10220.1 tubulin folding cofactor B; Swiss-Prot: sp|Q67Z52|TBCB_ARATH Tubulin-folding cofactor B; TrEMBL-Plants: tr|I3SPY8|I3SPY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0133300 | LjG1.1_chr5 | 31304467 | 31328262 | + | – | ||
n.a. | FAS-associated factor 2-B-like protein; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 | LjG1.1_chr5 | 49735104 | 49746530 | + | – | ||
n.a. | FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 | LjG1.1_chr5 | 49735424 | 49745816 | + | – | ||
n.a. | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 | LjG1.1_chr5 | 54671842 | 54676825 | - | – | ||
n.a. | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 | LjG1.1_chr5 | 54672241 | 54676829 | - | – | ||
n.a. | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 | LjG1.1_chr5 | 54673649 | 54676395 | - | – | ||
n.a. | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 | LjG1.1_chr5 | 54673828 | 54676398 | - | – | ||
n.a. | Autophagy-related protein; TAIR: AT3G15580.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9LRP7|ATG8I_ARATH Autophagy-related protein 8i; TrEMBL-Plants: tr|I3RZ94|I3RZ94_LOTJA Autophagy-related protein; Found in the gene: LotjaGi5g1v0240300 | LjG1.1_chr5 | 54856097 | 54858994 | + | – | ||
n.a. | BAG family molecular chaperone regulator-like protein; TAIR: AT5G52060.1 BCL-2-associated athanogene 1; Swiss-Prot: sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1; TrEMBL-Plants: tr|A0A1J7GEV2|A0A1J7GEV2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304300 | LjG1.1_chr5 | 62240344 | 62243577 | + | – | ||
n.a. | Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 | LjG1.1_chr5 | 63553624 | 63556631 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT4G02890.1 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|D7M3C0|D7M3C0_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 | LjG1.1_chr5 | 63553624 | 63556631 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT4G02890.1 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|D7M3C0|D7M3C0_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 | LjG1.1_chr5 | 63553624 | 63556631 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 | LjG1.1_chr5 | 63553848 | 63556553 | - | – | ||
n.a. | Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A068UJB0|A0A068UJB0_COFCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0317900 | LjG1.1_chr5 | 63554707 | 63555852 | - | – |