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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 7 of 18 with 50 rows per page. This search has taken 5.592s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v2804810.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357519575|ref|XP_003630076.1| chr4 37527295 37532610 +
2 domain predictions
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Lj4g3v2822310.1
n.a. ARM-repeat/Tetratricopeptide repeat (TPR)-like protein isoform 1 [Theobroma cacao] gi|508700237|gb|EOX92133.1| chr4 37751877 37758850 -
2 domain predictions
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Lj4g3v2949790.1
n.a. PREDICTED: U-box domain-containing protein 6-like [Glycine max] gi|356525144|ref|XP_003531187.1| chr4 38904823 38909163 -
2 domain predictions
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Lj4g3v2991190.2
n.a. Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao] gi|508777604|gb|EOY24860.1| chr4 39541977 39547126 -
2 domain predictions
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Lj4g3v3014470.1
n.a. PREDICTED: importin subunit beta-1-like [Glycine max] gi|356523655|ref|XP_003530452.1| chr4 40084753 40089070 -
2 domain predictions
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Lj4g3v3014640.1
n.a. SH3 domain-containing protein isoform 3 [Theobroma cacao] gi|508785006|gb|EOY32262.1| chr4 40178537 40192110 +
2 domain predictions
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Lj4g3v3061490.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357520957|ref|XP_003630767.1| chr4 40813862 40821104 +
2 domain predictions
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Lj4g3v3061490.2
n.a. U-box domain-containing protein [Medicago truncatula] gi|357520957|ref|XP_003630767.1| chr4 40813862 40821104 +
2 domain predictions
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Lj4g3v3113090.1
n.a. PREDICTED: protein VAC14 homolog [Glycine max] gi|356524533|ref|XP_003530883.1| chr4 41564051 41571400 -
2 domain predictions
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Lj4g3v3113810.2
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Glycine max] gi|356524636|ref|XP_003530934.1| chr4 41768141 41771529 +
2 domain predictions
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Lj5g3v0013180.1
n.a. binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297802544|ref|XP_002869156.1| chr5 25176 51100 +
2 domain predictions
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Lj5g3v0013190.1
n.a. Alpha/beta-Hydrolases superfamily protein isoform 3 [Theobroma cacao] gi|508722641|gb|EOY14538.1| chr5 26583 27804 +
2 domain predictions
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Lj5g3v0308860.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356564127|ref|XP_003550308.1| chr5 2987929 2990888 +
2 domain predictions
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Lj5g3v0310150.1
n.a. PREDICTED: interferon-related developmental regulator 1-like [Glycine max] gi|356564123|ref|XP_003550306.1| chr5 3112296 3119910 +
2 domain predictions
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Lj5g3v0522170.1
n.a. PREDICTED: U-box domain-containing protein 6-like [Cicer arietinum] gi|502125072|ref|XP_004498787.1| chr5 5482260 5485424 -
2 domain predictions
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Lj5g3v0616260.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ataxin-10-like [Glycine max] gi|356530187|ref|XP_003533665.1| chr5 8184889 8188184 +
2 domain predictions
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Lj5g3v0626520.1
n.a. PREDICTED: importin subunit alpha-2-like [Cicer arietinum] gi|502121877|ref|XP_004497474.1| chr5 8365068 8370772 +
2 domain predictions
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Lj5g3v0626520.2
n.a. PREDICTED: importin subunit alpha-2-like [Cicer arietinum] gi|502121877|ref|XP_004497474.1| chr5 8365068 8370772 +
2 domain predictions
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Lj5g3v1014710.1
n.a. PREDICTED: BEACH domain-containing protein lvsA-like isoform X1 [Cicer arietinum] gi|502115252|ref|XP_004495161.1| chr5 16303724 16322712 +
2 domain predictions
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Lj5g3v1073940.1
n.a. PREDICTED: U-box domain-containing protein 3-like isoform X1 [Cicer arietinum] gi|502114958|ref|XP_004495091.1| chr5 17514804 17519570 +
2 domain predictions
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Lj5g3v1207740.1
n.a. PREDICTED: U-box domain-containing protein 44-like [Cicer arietinum] gi|502116379|ref|XP_004495402.1| chr5 19498921 19504900 +
2 domain predictions
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Lj5g3v1290160.1
n.a. PREDICTED: probable inactive serine/threonine-protein kinase scy1-like [Glycine max] gi|356576646|ref|XP_003556441.1| chr5 20238985 20252133 +
2 domain predictions
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Lj5g3v1513590.1
n.a. PREDICTED: importin subunit alpha-1b-like isoform X1 [Cicer arietinum] gi|502117024|ref|XP_004495674.1| chr5 22060358 22064747 -
2 domain predictions
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Lj5g3v1794720.1
n.a. PREDICTED: protein MOR1-like [Glycine max] gi|356574625|ref|XP_003555446.1| chr5 25586768 25594636 -
2 domain predictions
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Lj5g3v1794730.1
n.a. PREDICTED: protein MOR1-like [Glycine max] gi|356533943|ref|XP_003535517.1| chr5 25594741 25607633 -
2 domain predictions
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Lj5g3v1796810.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356533949|ref|XP_003535520.1| chr5 25667345 25669596 -
2 domain predictions
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Lj5g3v1796810.2
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356576248|ref|XP_003556245.1| chr5 25667345 25670722 -
2 domain predictions
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Lj5g3v1806980.1
n.a. PREDICTED: pumilio homolog 4-like isoform X4 [Cicer arietinum] gi|502118396|ref|XP_004496246.1| chr5 25743558 25752342 +
2 domain predictions
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Lj5g3v1806980.2
n.a. PREDICTED: pumilio homolog 4-like isoform X5 [Cicer arietinum] gi|502118398|ref|XP_004496247.1| chr5 25743558 25752342 +
2 domain predictions
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Lj5g3v2057450.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isoform X1 [Cicer arietinum] gi|502119853|ref|XP_004496757.1| chr5 29662923 29671577 +
2 domain predictions
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Lj5g3v2217170.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like isoform X1 [Cicer arietinum] gi|502120866|ref|XP_004497109.1| chr5 31915139 31921893 +
2 domain predictions
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Lj5g3v2240860.1
n.a. PREDICTED: tubulin-specific chaperone D-like [Glycine max] gi|356534400|ref|XP_003535743.1| chr5 32199508 32210374 +
2 domain predictions
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Lj5g3v2240860.3
n.a. PREDICTED: tubulin-specific chaperone D-like [Glycine max] gi|356534400|ref|XP_003535743.1| chr5 32199508 32210374 +
2 domain predictions
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Lj5g3v2240860.4
n.a. PREDICTED: tubulin-specific chaperone D-like [Glycine max] gi|356574161|ref|XP_003555220.1| chr5 32206372 32210374 +
2 domain predictions
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Lj5g3v2246110.1
n.a. PREDICTED: transportin-1-like isoform 1 [Glycine max] gi|356536398|ref|XP_003536725.1| chr5 32594587 32609496 +
2 domain predictions
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Lj5g3v2302930.1
n.a. PREDICTED: probable importin-7 homolog [Cicer arietinum] gi|502121714|ref|XP_004497420.1| chr5 34126125 34145452 +
2 domain predictions
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Lj6g3v0227400.1
n.a. PREDICTED: HEAT repeat-containing protein 6-like [Cicer arietinum] gi|502134262|ref|XP_004502055.1| chr6 2596053 2627705 +
2 domain predictions
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Lj6g3v0227400.2
n.a. PREDICTED: HEAT repeat-containing protein 6-like [Cicer arietinum] gi|502134262|ref|XP_004502055.1| chr6 2596053 2627705 +
2 domain predictions
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Lj6g3v0227400.3
n.a. PREDICTED: HEAT repeat-containing protein 6-like [Cicer arietinum] gi|502134262|ref|XP_004502055.1| chr6 2596053 2626082 +
2 domain predictions
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Lj6g3v0227400.4
n.a. PREDICTED: HEAT repeat-containing protein 6-like [Cicer arietinum] gi|502134262|ref|XP_004502055.1| chr6 2608935 2627705 +
2 domain predictions
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Lj6g3v0405290.1
n.a. Ran-binding protein [Medicago truncatula] gi|357460779|ref|XP_003600671.1| chr6 3670958 3674355 -
2 domain predictions
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Lj6g3v0408370.1
n.a. PREDICTED: U-box domain-containing protein 21-like [Cicer arietinum] gi|502137539|ref|XP_004503116.1| chr6 3696049 3697823 +
2 domain predictions
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Lj6g3v0410520.1
n.a. PREDICTED: condensin complex subunit 3-like [Cicer arietinum] gi|502137558|ref|XP_004503123.1| chr6 3782531 3790413 +
2 domain predictions
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Lj6g3v0525130.1
n.a. Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1| chr6 5275374 5281946 +
2 domain predictions
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Lj6g3v0657700.1
n.a. PREDICTED: proteasome activator complex subunit 4-like isoform 1 [Glycine max] gi|356527200|ref|XP_003532200.1| chr6 6478022 6487202 -
2 domain predictions
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Lj6g3v0657700.2
n.a. PREDICTED: proteasome activator complex subunit 4-like [Cicer arietinum] gi|502129068|ref|XP_004500172.1| chr6 6481352 6487203 -
2 domain predictions
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Lj6g3v0683420.2
n.a. PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max] gi|356532415|ref|XP_003534768.1| chr6 6735553 6749954 +
2 domain predictions
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Lj6g3v0753210.1
n.a. PREDICTED: vacuolar protein 8-like isoform X1 [Cicer arietinum] gi|502146973|ref|XP_004506680.1| chr6 7127678 7128250 -
2 domain predictions
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Lj6g3v0762690.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr6 7218791 7219429 -
2 domain predictions
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Lj6g3v0763700.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr6 7225247 7225717 -
2 domain predictions
 –