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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017907
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 245 results. Now displaying 2 of 5 with 50 rows per page. This search has taken 5.393s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0850590.1
n.a. PREDICTED: E3 ubiquitin-protein ligase makorin-like [Glycine max] gi|356557148|ref|XP_003546880.1| chr3 10669869 10673399 -
2 domain predictions
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Lj3g3v1403940.1
n.a. PREDICTED: E3 ubiquitin-protein ligase Hakai-like [Cicer arietinum] gi|502168892|ref|XP_004514488.1| chr3 17942941 17946805 +
2 domain predictions
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Lj3g3v1957980.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Fragaria vesca subsp]. vesca] gi|470127714|ref|XP_004299808.1| chr3 25288831 25291340 +
2 domain predictions
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Lj3g3v2309770.1
n.a. IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| chr3 28089241 28099773 -
2 domain predictions
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Lj3g3v2575830.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Glycine max] gi|356522438|ref|XP_003529853.1| chr3 31368457 31369566 +
2 domain predictions
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Lj3g3v2809090.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1| chr3 34400295 34403002 -
2 domain predictions
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Lj3g3v2809120.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1| chr3 34406958 34409140 -
2 domain predictions
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Lj3g3v2809850.1
n.a. Ring 1b [Theobroma cacao] gi|508707572|gb|EOX99468.1| chr3 34611824 34619962 +
2 domain predictions
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Lj3g3v2920810.1
n.a. PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi|502145992|ref|XP_004506272.1| chr3 36326603 36335573 +
2 domain predictions
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Lj3g3v2920810.2
n.a. PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi|502145992|ref|XP_004506272.1| chr3 36326603 36335573 +
2 domain predictions
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Lj3g3v2923210.1
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505266 36508191 -
2 domain predictions
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Lj3g3v2923210.2
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505266 36507787 -
2 domain predictions
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Lj3g3v2923210.3
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505266 36507392 -
2 domain predictions
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Lj3g3v2923210.4
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505402 36507392 -
2 domain predictions
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Lj3g3v3511320.1
n.a. PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like isoform X1 [Cicer arietinum] gi|502144764|ref|XP_004505742.1| chr3 42660770 42663477 +
2 domain predictions
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Lj3g3v3690070.1
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cicer arietinum] gi|502146141|ref|XP_004506322.1| chr3 44877034 44888178 -
2 domain predictions
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Lj4g3v0216600.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 1-like [Glycine max] gi|356506028|ref|XP_003521790.1| chr4 2709936 2713676 +
2 domain predictions
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Lj4g3v0450230.1
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr4 6171951 6191456 +
2 domain predictions
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Lj4g3v0451030.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like [Glycine max] gi|356521345|ref|XP_003529317.1| chr4 6559395 6562907 +
2 domain predictions
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Lj4g3v0451030.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like [Glycine max] gi|356521345|ref|XP_003529317.1| chr4 6559395 6562907 +
2 domain predictions
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Lj4g3v0451150.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356521355|ref|XP_003529322.1| chr4 6629297 6630407 -
2 domain predictions
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Lj4g3v1389210.1
n.a. RING/U-box superfamily protein [Theobroma cacao] gi|508775113|gb|EOY22369.1| chr4 21627985 21630624 +
2 domain predictions
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Lj4g3v2023790.1
n.a. PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XBAT32-like [Cicer arietinum] gi|502150110|ref|XP_004507793.1| chr4 28189677 28195088 -
2 domain predictions
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Lj4g3v2511690.1
n.a. RING finger protein [Medicago truncatula] gi|357463141|ref|XP_003601852.1| chr4 33929498 33931374 -
2 domain predictions
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Lj4g3v2511690.2
n.a. RING finger protein [Medicago truncatula] gi|357463141|ref|XP_003601852.1| chr4 33929498 33932043 -
2 domain predictions
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Lj4g3v3014190.1
n.a. Uncharacterized protein TCM_016489 [Theobroma cacao] gi|508777803|gb|EOY25059.1| chr4 39959328 39968616 +
2 domain predictions
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Lj5g3v0434820.1
n.a. PREDICTED: peroxisome biogenesis factor 10-like [Glycine max] gi|356564027|ref|XP_003550258.1| chr5 4364717 4372151 -
2 domain predictions
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Lj5g3v1513550.1
n.a. PHD and RING finger domain-containing protein [Medicago truncatula] gi|357511785|ref|XP_003626181.1| chr5 22041010 22044719 +
2 domain predictions
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Lj5g3v1630000.1
n.a. PREDICTED: E3 ubiquitin-protein ligase BAH1-like isoform X1 [Cicer arietinum] gi|502117818|ref|XP_004495961.1| chr5 23608537 23612012 +
2 domain predictions
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Lj5g3v2015060.2
n.a. PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max] gi|356575939|ref|XP_003556093.1| chr5 28491828 28496373 -
2 domain predictions
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Lj5g3v2060620.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502119893|ref|XP_004496771.1| chr5 29756424 29757501 +
2 domain predictions
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Lj5g3v2267350.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr5 33160225 33161396 +
2 domain predictions
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Lj5g3v2267370.1
n.a. n.a. chr5 33160269 33163575 -
2 domain predictions
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Lj5g3v2267370.2
n.a. n.a. chr5 33160384 33163800 -
2 domain predictions
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Lj5g3v2267380.2
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr5 33162289 33163611 +
2 domain predictions
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Lj6g3v0960480.1
n.a. RING/U-box superfamily protein isoform 2 [Theobroma cacao] gi|508785653|gb|EOY32909.1| chr6 10768240 10772229 +
2 domain predictions
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Lj6g3v1150710.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr6 14075608 14078086 +
2 domain predictions
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Lj6g3v1150730.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr6 14081975 14082816 +
2 domain predictions
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Lj6g3v1692560.1
n.a. E3 ubiquitin-protein ligase RNF216 [Medicago truncatula] gi|357448361|ref|XP_003594456.1| chr6 18876012 18880795 +
2 domain predictions
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Lj6g3v1946530.1
n.a. PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine max] gi|356557797|ref|XP_003547197.1| chr6 22290952 22291667 -
2 domain predictions
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Lj6g3v2041930.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356555252|ref|XP_003545948.1| chr6 24036291 24038483 +
2 domain predictions
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Lj6g3v2043200.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like [Glycine max] gi|356521345|ref|XP_003529317.1| chr6 24122102 24126109 -
2 domain predictions
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Lj6g3v2045730.1
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr6 24294073 24304878 -
2 domain predictions
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Lj6g3v2045730.2
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr6 24294073 24304878 -
2 domain predictions
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Lj6g3v2045730.3
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr6 24294073 24302907 -
2 domain predictions
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Lj6g3v2116880.1
n.a. PREDICTED: nitric oxide synthase-interacting protein-like [Cicer arietinum] gi|502077568|ref|XP_004485689.1| chr6 24697358 24699604 -
2 domain predictions
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LotjaGi1g1v0004400.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 804738 813954 +
2 domain predictions
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LotjaGi1g1v0004400.2
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 806178 813954 +
2 domain predictions
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LotjaGi1g1v0067500.1
n.a. E3 ubiquitin-protein ligase COP1; TAIR: AT2G32950.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1; TrEMBL-Plants: tr|G7KH91|G7KH91_MEDTR E3 ubiquitin-protein ligase COP1; Found in the gene: LotjaGi1g1v0067500 LjG1.1_chr1 9342364 9354793 -
2 domain predictions
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LotjaGi1g1v0068000.1
n.a. E3 ubiquitin-protein ligase BRE1-like 2; TAIR: AT1G55250.5 histone mono-ubiquitination 2; Swiss-Prot: sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2; TrEMBL-Plants: tr|A0A0B2SID2|A0A0B2SID2_GLYSO E3 ubiquitin-protein ligase BRE1-like 2; Found in the gene: LotjaGi1g1v0068000 LjG1.1_chr1 9411375 9422801 +
2 domain predictions
 –