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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:1.10.8.10
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 103 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.255s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0098339.2
n.a. UBX domain-containing protein [Arabidopsis thaliana] gi|42570051|ref|NP_680549.3| chr0 41617437 41621261 -
1 domain prediction
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Lj0g3v0210329.1
n.a. UBX domain-containing protein [Theobroma cacao] gi|508776680|gb|EOY23936.1| chr0 105673181 105676997 -
1 domain prediction
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Lj0g3v0253199.1
n.a. PREDICTED: UBX domain-containing protein 7-like [Cicer arietinum] gi|502154165|ref|XP_004509607.1| chr0 131476062 131483209 +
1 domain prediction
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Lj0g3v0257769.2
n.a. Nascent polypeptide-associated complex subunit alpha [Medicago truncatula] gi|357464241|ref|XP_003602402.1| chr0 133821494 133824453 +
1 domain prediction
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Lj0g3v0269239.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| chr0 139479183 139480542 +
1 domain prediction
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Lj0g3v0338569.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| chr0 177276636 177289116 +
1 domain prediction
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Lj0g3v0338909.1
n.a. PREDICTED: ubiquilin-1-like [Glycine max] gi|356501749|ref|XP_003519686.1| chr0 177477416 177484896 -
1 domain prediction
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Lj1g3v0180970.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| chr1 2075745 2092386 +
1 domain prediction
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Lj1g3v1466220.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508845|ref|XP_003523164.1| chr1 17549155 17552308 -
1 domain prediction
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Lj1g3v1526280.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356518443|ref|XP_003527888.1| chr1 18272805 18292132 +
1 domain prediction
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Lj1g3v3328650.1
n.a. RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| chr1 37256074 37261582 +
1 domain prediction
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Lj1g3v4081730.1
n.a. PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Glycine max] gi|356571874|ref|XP_003554096.1| chr1 48149433 48152396 -
1 domain prediction
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Lj1g3v4081760.1
n.a. PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1-like [Cicer arietinum] gi|502107593|ref|XP_004493313.1| chr1 48155084 48157879 -
1 domain prediction
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Lj1g3v4107150.1
n.a. Ubiquitin-associated domain-containing protein [Medicago truncatula] gi|357509361|ref|XP_003624969.1| chr1 48875189 48881294 -
1 domain prediction
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Lj1g3v4763790.1
n.a. RHOMBOID-like protein 15 [Theobroma cacao] gi|508717744|gb|EOY09641.1| chr1 57152599 57158146 -
1 domain prediction
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Lj2g3v0824620.1
n.a. PREDICTED: enolase-phosphatase E1-like isoform X1 [Cicer arietinum] gi|502163996|ref|XP_004513014.1| chr2 12880587 12886959 -
1 domain prediction
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Lj2g3v0918390.1
n.a. PREDICTED: elongation factor Ts, mitochondrial-like [Cicer arietinum] gi|502090285|ref|XP_004489179.1| chr2 14577663 14581054 +
1 domain prediction
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Lj2g3v1155470.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr2 18260546 18268422 +
1 domain prediction
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Lj2g3v1644370.1
n.a. PREDICTED: ubiquilin-like [Cicer arietinum] gi|502161708|ref|XP_004512257.1| chr2 25537249 25541563 -
1 domain prediction
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Lj2g3v2017300.1
n.a. Ara4-interacting protein [Arabidopsis thaliana] gi|13160609|dbj|BAB32954.1| chr2 30772339 30776318 -
1 domain prediction
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Lj2g3v3007320.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr2 38802046 38806439 -
1 domain prediction
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Lj2g3v3007330.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr2 38802931 38806439 -
1 domain prediction
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Lj2g3v3339780.1
n.a. n.a. chr2 42840476 42846276 +
1 domain prediction
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Lj3g3v0707070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr3 7617384 7624966 +
1 domain prediction
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Lj3g3v0730420.1
n.a. PREDICTED: UBX domain-containing protein 1-like [Cicer arietinum] gi|502155980|ref|XP_004510266.1| chr3 8313323 8319716 -
1 domain prediction
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Lj3g3v0950140.1
n.a. PREDICTED: DCN1-like protein 2-like [Glycine max] gi|356525740|ref|XP_003531481.1| chr3 11925588 11933742 +
1 domain prediction
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Lj3g3v0950140.2
n.a. PREDICTED: DCN1-like protein 2-like [Glycine max] gi|356525740|ref|XP_003531481.1| chr3 11925588 11933742 +
1 domain prediction
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Lj3g3v1855440.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr3 23651120 23653846 -
1 domain prediction
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Lj4g3v0217750.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1| chr4 2777939 2794774 -
1 domain prediction
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Lj4g3v0217760.1
n.a. n.a. chr4 2786227 2790836 +
1 domain prediction
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Lj4g3v1427520.1
n.a. JOKA2 [Nicotiana tabacum] gi|337732515|gb|AEI71779.1| chr4 22215028 22219154 -
1 domain prediction
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Lj4g3v2265080.1
n.a. Huntingtin-interacting protein K [Medicago truncatula] gi|357448911|ref|XP_003594731.1| chr4 31458756 31460872 -
1 domain prediction
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Lj4g3v2603780.1
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920145 34925485 +
1 domain prediction
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Lj4g3v2603780.2
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920738 34925485 +
1 domain prediction
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Lj5g3v1496740.1
n.a. ATP-dependent DNA helicase Q4 [Medicago truncatula] gi|357441723|ref|XP_003591139.1| chr5 21720168 21723469 +
1 domain prediction
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Lj5g3v1496740.3
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| chr5 21720168 21725651 +
1 domain prediction
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Lj5g3v1496740.4
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| chr5 21720168 21725651 +
1 domain prediction
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Lj5g3v2215070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr5 31881296 31885879 +
1 domain prediction
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Lj6g3v0670020.1
n.a. PREDICTED: DNA damage-inducible protein 1-like [Cicer arietinum] gi|502129048|ref|XP_004500164.1| chr6 6645889 6654281 +
1 domain prediction
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Lj6g3v1008170.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr6 11118178 11122359 +
1 domain prediction
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Lj6g3v1093250.1
n.a. PREDICTED: NEDD8 ultimate buster 1-like [Glycine max] gi|356530579|ref|XP_003533858.1| chr6 13297706 13303416 +
1 domain prediction
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Lj6g3v1915760.1
n.a. Huntingtin-interacting protein K [Medicago truncatula] gi|357448911|ref|XP_003594731.1| chr6 21478869 21480985 +
1 domain prediction
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LotjaGi1g1v0004000.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757210 759149 +
1 domain prediction
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LotjaGi1g1v0004000.2
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|G7KFD2|G7KFD2_MEDTR AAA family ATPase; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757213 758934 +
1 domain prediction
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LotjaGi1g1v0042200.1
n.a. Nascent polypeptide associated complex alpha subunit, putative; TAIR: AT3G49470.1 nascent polypeptide-associated complex subunit alpha-like protein 2; Swiss-Prot: sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2; TrEMBL-Plants: tr|I3S057|I3S057_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0042200 LjG1.1_chr1 5810229 5813181 +
1 domain prediction
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LotjaGi1g1v0053300.1
n.a. Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 LjG1.1_chr1 7519997 7524722 +
1 domain prediction
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LotjaGi1g1v0053300.2
n.a. Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 LjG1.1_chr1 7522304 7524262 +
1 domain prediction
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LotjaGi1g1v0064900.1
n.a. UBX domain-containing protein, putative; TAIR: AT4G15410.1 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma; Swiss-Prot: sp|Q7Y175|PUX5_ARATH Plant UBX domain-containing protein 5; TrEMBL-Plants: tr|Q9AXJ7|Q9AXJ7_MEDTR Phosphatase-like protein Mtc923; Found in the gene: LotjaGi1g1v0064900 LjG1.1_chr1 8992929 8998343 +
1 domain prediction
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LotjaGi1g1v0135300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791156 21808026 +
1 domain prediction
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LotjaGi1g1v0135300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21806305 +
1 domain prediction
 –